Clone LD22446 Report

Search the DGRC for LD22446

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:224
Well:46
Vector:pOT2
Associated Gene/Transcriptscat-RA
Protein status:LD22446.pep: gold
Preliminary Size:2200
Sequenced Size:3517

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3766 2001-01-01 Release 2 assignment
CG3766 2001-10-10 Blastp of sequenced clone
CG3766 2003-01-01 Sim4 clustering to Release 3
scat 2008-04-29 Release 5.5 accounting
scat 2008-08-15 Release 5.9 accounting
scat 2008-12-18 5.12 accounting

Clone Sequence Records

LD22446.complete Sequence

3517 bp (3517 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061309

> LD22446.complete
CTCAATTAAGCGACCGCAGAAGCAACAGAAACACCCATAAATCGGACGAA
ATGTGCCCATTCCAAGGCTAGAGAACGAACAGCCAATGAAAGTGGACTTA
TTGCGGAGCAACCAAAATGCAACATCTGGCAAGAGAGGCAGACGAGCGAA
GGTAGAAAACAAACATTGACATAACACGTCAACGATTGGGAGCAGGTGAA
CCACCGGGGAAACCATACGGCGCGGCACTTTAAACGCAGAGCATGTGTTA
TGGCCACGACAAGATCCGCCGGAGGTGCCGCCACGTCCGTTGATACTGGA
CCGGCAGCAGGGAACTCGGGTATCAGAAAGCTATCGACGGCTAGCGTCGG
TGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCAGAGCTGCTACTACTGCA
CCCGGGAGCACTTTAAAAGCATCAGCGACTTCGTCAATCACCTGCGAAAT
CGTCACTGTACCCGGGAGGGTGGCTCATTTGTGTGCCGCTATGGCTTCAA
TGGAGTATGTGCCTCGCTTCCACTGGACGGAGTCTCAGATCGCGATTACG
ACGCCCATGTCGCCAAGTACCATGTCAATCAGCACACGCGCGAAATGCCT
CCCGAATGGGGAGTCTACTCGGCGGCCCAAAACCTGCCAGCGGTGCTCAA
CGATCCCTCGCGAGGAAAGCAGAGTAATCTGTTTACCAAAAAGTGGGGCG
AGCATTTTGTGGAACGAAGTCATGTGCCCCCATCACCCCGATTGCCCGAT
ATAACCCATGCGGATTTTACCGTGTATCTGGGCAGCATAGGGAAGCGATA
TCGTTGGCATGAGCGGCGGCAGCAACAACTGGAGCGTGATAAACCGCTGG
AGAATGGAGCACAAGGAGCACCTGGACCGGGAACTGGTGGTCAGACACCA
ACACACTTGAGTTCTGTGCCCGAGATCTTTCTGAAATCACAACTGCAGCT
TCATCATCCGGCAACCTTTAAGCAGGTATTTCCTAATTACATGCAAACAT
CGGCTTCCAGTCCGGAAAGTCATCAGCAAACTGGTCGTCAGCTGCAGGAA
CAGCTGAGTCACTACCTGGACATGGTGGAAGTTAAAATAGCGCAACAGGT
ATCGCAGAAATCGGCTGCGTTCTTTCACGCCATGACCACGCAGCACGCTA
TTCTGGCTGAGATGGAGCAGGCGGCCGACCAAGTACGTCAGTTGCGGGCA
GCACTGGCCGAACTCCACAGCCACTCGGTTGTAGACAGCTTCAAAGTGCT
GCGTTTCGCCCAAAGAAGACAGCACTATAACCTCACACTAGACAAACTCC
GACTGATGGCCACCGTACACAAGACGCAACCGATGCTGCAGCTCCTACTG
GGCACCCAGGACTATGTGGCAGCCTTGGATTTGATAGGCACCACGCAGGA
AATACTTTCCGCCGAACTCCTTGGCATTCACTGCTTTAAGCATTTGCCTA
TGCAGCTTAGCGAAATGGAGAAGCTTATTGACAAAATGCTTACCACGGAA
TTCGAGCGCTATGCTGCCGCCGATCTAAATCGACCGTTAACGGATGCCCT
CCGGGAAACCGACAGCGTTTGCGCCGAGGAGGATAAACTCGTAGCTATTG
TGATGGGCCTGTTGCGCAAGCAGAACTTCTCCTTTGTCCAGGCTTACCAG
CAAGAAGCAATCGCCACCATTCGAGCCATCATAAAACAGCTGCTGATTGA
GGTTTTGGCACGGAGTGACAGCGATCAGGAGATCAGTTTAACGGGCCACG
GAGAGCAAGCCTTGGAGCTCACCCTTCCCGAATGGATTGCTCTGCTCCAG
CGCTCCAGCCAAGCTTTGGTTTCCATTCTCGAAAGAATTAAAACTGTAGT
TGGTATAATGCAGCAAACAGCGGACGCAGCTGTGGGAGCCCAGGACGCAG
TGAATCTGATAGATTCAGAAGCCTTTTTGAGTCCGGGACACCATGAGCAA
CTAAAAAACCAATTGCAACAACTGCTTCAAGCCGTCTGCCACTACTGCCA
TGAGCGTTGTGCCAACATTGTGTCCCCTCAGAGCCTGGAAAGGAGCTCAG
CTAGCGAGCAAGAACTTTTCCAACTATCTGAGATTGTGGATCACTTTGGC
GAGACAACAAGGAGCATTTGTGGAGTGGCCAGTGTGCCCCTCCAGCTGGC
CCTCAAAGTCCAAGCCTCCCGATATGCTCAACGATTCCATTCTGAACGAA
AGCAGAAGTTGTCCTTACTCCTGGATCAGGAGCGCTGGCGCCAAGTAGAC
ATTCCGCACGAATTTCAGAGAATAATCGAACGTATGGCCGCCGGGGACTA
TGCCAAACCGGAGATGGGCAATCTGATAAGCAATGGAGCAGGCAACCCAG
TGCTCTTGGTGGAAGGCAAACAACCGTACACGTTGGTCAGCGCTTCGCTA
ATGCTCATCCGAATGTTGTATGAGTACGGTTGTAGTGCACATCGGCTGCC
ATTGTTAGCCAGCTATCACGCCAGGAATGTGGTGGACCTGCTGCGCTGCT
TCAACTCAAGAAGCTGCCAACTAATTATCGGAGCAGGAGCAATGCGAGTT
GCTGGGCTAAAAACCATAACGAGCACCAACCTGGCTCTGGTTTCGCGAGC
ACTGCAACTAGTTCTATGGCTACTGCCCAAGCTGAAAGAGCATTTCCAAG
CGATGAGCGGATACGAAACTATCGAGCGGGACTACCAGGGTCACATCAAG
GAGATCGAGAATAAAATACACGGAATTGTATCCGAGAGATTGGCAGCTCA
ACTGGATGCCTGGGAAGCCAGACCACCTATACCTTCTCAGACATTCCGTC
ACATCTCGCGTCACCTGGTGAAACTTCACGAGGCCATCGCCGGTGTGCTG
CCGGAGGCACAGATACACGAAATCTACGGCGTTGTTCATCGAAACTTTAA
AGACAAGCTGCGGGAACAACTGCTCAAGTTGAATGTGAACAACAATGGGG
GTCCGCAGCACGGGGTGGTGACATCAGAGCTGACCTTCTACATGGAGACG
CTGCGCACACTGAAAGCCCTGCCCGCCGAGCAGCTAGACAACGGGATTCT
GGAGGAGATCTGGCTCTACTGAGCATTCCGAAGTATTCCATATGGTTGCC
GCGGAAATCCTCCGACCGCCCAGCCTAGTTCGTCTTCATTGTTTGTTATC
CTTGTTTTATTTATACAATACCGATTGTCGCGTCCAGTTCAGTCTATCTT
GTTTGCCGCTGTACATTGCTTGTACTTTTATGTTCCGCCCTATAGCAAAA
GGAAATTGGAAATGTATCTCTTTTGTTGCGCACTTTTTTAACACTTAAGC
TTAAAGTCGATGGAAGGCTTATGATTAAAGAATAGAAAATAATCAACAAA
TTTCAATGCGTACAAATCAATGGCGGTAAACGATTCCCTTGTTCCTTTAG
TATTATTATCGTTAGCTGGATTTCTATTTGGAATATATATATTTTTTAAT
GTTTAATTTAATCAGATGACAACCAATAAATAAAGGAAATCCAAAATTAA
AAAAAAAAAAAAAAAAA

LD22446.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
scat-RA 3680 scat-RA 116..3616 1..3501 17505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9431216..9434276 438..3498 15065 99.5 Plus
chr2L 23010047 chr2L 9430400..9430836 1..437 2155 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9432281..9435344 438..3501 15320 100 Plus
2L 23513712 2L 9431465..9431901 1..437 2185 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9432281..9435344 438..3501 15320 100 Plus
2L 23513712 2L 9431465..9431901 1..437 2185 100 Plus
Blast to na_te.dros performed 2019-03-16 16:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3901..3970 3461..3393 122 65.7 Minus

LD22446.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:49 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9430400..9430836 1..437 99 -> Plus
chr2L 9431216..9434276 438..3498 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:35 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 1..2823 250..3072 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:08 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 1..2823 250..3072 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:23 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 1..2823 250..3072 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:00 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 1..2823 250..3072 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:06 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 1..2823 250..3072 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:18 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 59..3556 1..3498 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:08 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 63..3560 1..3498 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:23 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 61..3558 1..3498 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:00 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 59..3556 1..3498 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:06 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
scat-RA 61..3558 1..3498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:49 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9431465..9431901 1..437 100 -> Plus
2L 9432281..9435341 438..3498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:49 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9431465..9431901 1..437 100 -> Plus
2L 9432281..9435341 438..3498 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:49 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9431465..9431901 1..437 100 -> Plus
2L 9432281..9435341 438..3498 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:23 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9431465..9431901 1..437 100 -> Plus
arm_2L 9432281..9435341 438..3498 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:51 Download gff for LD22446.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9431465..9431901 1..437 100 -> Plus
2L 9432281..9435341 438..3498 100   Plus

LD22446.pep Sequence

Translation from 249 to 3071

> LD22446.pep
MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYC
TREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDY
DAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWG
EHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPL
ENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQT
SASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHA
ILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKL
RLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLP
MQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAI
VMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGH
GEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDA
VNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSS
ASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSER
KQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNP
VLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRC
FNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQ
AMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFR
HISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNG
GPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLY*

LD22446.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22733-PA 936 GF22733-PA 1..936 1..940 4654 93 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25349-PA 940 GG25349-PA 1..940 1..940 4975 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13327-PA 955 GH13327-PA 51..955 44..940 3782 80.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
scat-PA 940 CG3766-PA 1..940 1..940 4841 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17666-PA 957 GI17666-PA 37..957 26..940 3914 81 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26149-PA 935 GL26149-PA 1..935 1..940 4366 88.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17672-PA 935 GA17672-PA 1..935 1..940 4366 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17451-PA 940 GM17451-PA 1..940 1..940 5015 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23603-PA 665 GD23603-PA 1..652 1..652 3458 98.8 Plus
Dsim\GD23604-PA 246 GD23604-PA 9..246 703..940 1273 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17862-PA 946 GJ17862-PA 29..946 26..940 3933 81.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:34:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24205-PA 934 GK24205-PA 1..934 1..940 3994 79.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18840-PA 940 GE18840-PA 1..940 1..940 4990 98.7 Plus

LD22446.hyp Sequence

Translation from 249 to 3071

> LD22446.hyp
MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYC
TREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDY
DAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWG
EHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPL
ENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQT
SASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHA
ILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKL
RLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLP
MQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAI
VMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGH
GEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDA
VNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSS
ASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSER
KQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNP
VLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRC
FNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQ
AMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFR
HISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNG
GPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLY*

LD22446.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
scat-PA 940 CG3766-PA 1..940 1..940 4841 100 Plus