BDGP Sequence Production Resources |
Search the DGRC for LD22446
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 224 |
Well: | 46 |
Vector: | pOT2 |
Associated Gene/Transcript | scat-RA |
Protein status: | LD22446.pep: gold |
Preliminary Size: | 2200 |
Sequenced Size: | 3517 |
Gene | Date | Evidence |
---|---|---|
CG3766 | 2001-01-01 | Release 2 assignment |
CG3766 | 2001-10-10 | Blastp of sequenced clone |
CG3766 | 2003-01-01 | Sim4 clustering to Release 3 |
scat | 2008-04-29 | Release 5.5 accounting |
scat | 2008-08-15 | Release 5.9 accounting |
scat | 2008-12-18 | 5.12 accounting |
3517 bp (3517 high quality bases) assembled on 2001-10-10
GenBank Submission: AY061309
> LD22446.complete CTCAATTAAGCGACCGCAGAAGCAACAGAAACACCCATAAATCGGACGAA ATGTGCCCATTCCAAGGCTAGAGAACGAACAGCCAATGAAAGTGGACTTA TTGCGGAGCAACCAAAATGCAACATCTGGCAAGAGAGGCAGACGAGCGAA GGTAGAAAACAAACATTGACATAACACGTCAACGATTGGGAGCAGGTGAA CCACCGGGGAAACCATACGGCGCGGCACTTTAAACGCAGAGCATGTGTTA TGGCCACGACAAGATCCGCCGGAGGTGCCGCCACGTCCGTTGATACTGGA CCGGCAGCAGGGAACTCGGGTATCAGAAAGCTATCGACGGCTAGCGTCGG TGGAATTGCCGGAGGAGTGGCGCCCAGCTGGCAGAGCTGCTACTACTGCA CCCGGGAGCACTTTAAAAGCATCAGCGACTTCGTCAATCACCTGCGAAAT CGTCACTGTACCCGGGAGGGTGGCTCATTTGTGTGCCGCTATGGCTTCAA TGGAGTATGTGCCTCGCTTCCACTGGACGGAGTCTCAGATCGCGATTACG ACGCCCATGTCGCCAAGTACCATGTCAATCAGCACACGCGCGAAATGCCT CCCGAATGGGGAGTCTACTCGGCGGCCCAAAACCTGCCAGCGGTGCTCAA CGATCCCTCGCGAGGAAAGCAGAGTAATCTGTTTACCAAAAAGTGGGGCG AGCATTTTGTGGAACGAAGTCATGTGCCCCCATCACCCCGATTGCCCGAT ATAACCCATGCGGATTTTACCGTGTATCTGGGCAGCATAGGGAAGCGATA TCGTTGGCATGAGCGGCGGCAGCAACAACTGGAGCGTGATAAACCGCTGG AGAATGGAGCACAAGGAGCACCTGGACCGGGAACTGGTGGTCAGACACCA ACACACTTGAGTTCTGTGCCCGAGATCTTTCTGAAATCACAACTGCAGCT TCATCATCCGGCAACCTTTAAGCAGGTATTTCCTAATTACATGCAAACAT CGGCTTCCAGTCCGGAAAGTCATCAGCAAACTGGTCGTCAGCTGCAGGAA CAGCTGAGTCACTACCTGGACATGGTGGAAGTTAAAATAGCGCAACAGGT ATCGCAGAAATCGGCTGCGTTCTTTCACGCCATGACCACGCAGCACGCTA TTCTGGCTGAGATGGAGCAGGCGGCCGACCAAGTACGTCAGTTGCGGGCA GCACTGGCCGAACTCCACAGCCACTCGGTTGTAGACAGCTTCAAAGTGCT GCGTTTCGCCCAAAGAAGACAGCACTATAACCTCACACTAGACAAACTCC GACTGATGGCCACCGTACACAAGACGCAACCGATGCTGCAGCTCCTACTG GGCACCCAGGACTATGTGGCAGCCTTGGATTTGATAGGCACCACGCAGGA AATACTTTCCGCCGAACTCCTTGGCATTCACTGCTTTAAGCATTTGCCTA TGCAGCTTAGCGAAATGGAGAAGCTTATTGACAAAATGCTTACCACGGAA TTCGAGCGCTATGCTGCCGCCGATCTAAATCGACCGTTAACGGATGCCCT CCGGGAAACCGACAGCGTTTGCGCCGAGGAGGATAAACTCGTAGCTATTG TGATGGGCCTGTTGCGCAAGCAGAACTTCTCCTTTGTCCAGGCTTACCAG CAAGAAGCAATCGCCACCATTCGAGCCATCATAAAACAGCTGCTGATTGA GGTTTTGGCACGGAGTGACAGCGATCAGGAGATCAGTTTAACGGGCCACG GAGAGCAAGCCTTGGAGCTCACCCTTCCCGAATGGATTGCTCTGCTCCAG CGCTCCAGCCAAGCTTTGGTTTCCATTCTCGAAAGAATTAAAACTGTAGT TGGTATAATGCAGCAAACAGCGGACGCAGCTGTGGGAGCCCAGGACGCAG TGAATCTGATAGATTCAGAAGCCTTTTTGAGTCCGGGACACCATGAGCAA CTAAAAAACCAATTGCAACAACTGCTTCAAGCCGTCTGCCACTACTGCCA TGAGCGTTGTGCCAACATTGTGTCCCCTCAGAGCCTGGAAAGGAGCTCAG CTAGCGAGCAAGAACTTTTCCAACTATCTGAGATTGTGGATCACTTTGGC GAGACAACAAGGAGCATTTGTGGAGTGGCCAGTGTGCCCCTCCAGCTGGC CCTCAAAGTCCAAGCCTCCCGATATGCTCAACGATTCCATTCTGAACGAA AGCAGAAGTTGTCCTTACTCCTGGATCAGGAGCGCTGGCGCCAAGTAGAC ATTCCGCACGAATTTCAGAGAATAATCGAACGTATGGCCGCCGGGGACTA TGCCAAACCGGAGATGGGCAATCTGATAAGCAATGGAGCAGGCAACCCAG TGCTCTTGGTGGAAGGCAAACAACCGTACACGTTGGTCAGCGCTTCGCTA ATGCTCATCCGAATGTTGTATGAGTACGGTTGTAGTGCACATCGGCTGCC ATTGTTAGCCAGCTATCACGCCAGGAATGTGGTGGACCTGCTGCGCTGCT TCAACTCAAGAAGCTGCCAACTAATTATCGGAGCAGGAGCAATGCGAGTT GCTGGGCTAAAAACCATAACGAGCACCAACCTGGCTCTGGTTTCGCGAGC ACTGCAACTAGTTCTATGGCTACTGCCCAAGCTGAAAGAGCATTTCCAAG CGATGAGCGGATACGAAACTATCGAGCGGGACTACCAGGGTCACATCAAG GAGATCGAGAATAAAATACACGGAATTGTATCCGAGAGATTGGCAGCTCA ACTGGATGCCTGGGAAGCCAGACCACCTATACCTTCTCAGACATTCCGTC ACATCTCGCGTCACCTGGTGAAACTTCACGAGGCCATCGCCGGTGTGCTG CCGGAGGCACAGATACACGAAATCTACGGCGTTGTTCATCGAAACTTTAA AGACAAGCTGCGGGAACAACTGCTCAAGTTGAATGTGAACAACAATGGGG GTCCGCAGCACGGGGTGGTGACATCAGAGCTGACCTTCTACATGGAGACG CTGCGCACACTGAAAGCCCTGCCCGCCGAGCAGCTAGACAACGGGATTCT GGAGGAGATCTGGCTCTACTGAGCATTCCGAAGTATTCCATATGGTTGCC GCGGAAATCCTCCGACCGCCCAGCCTAGTTCGTCTTCATTGTTTGTTATC CTTGTTTTATTTATACAATACCGATTGTCGCGTCCAGTTCAGTCTATCTT GTTTGCCGCTGTACATTGCTTGTACTTTTATGTTCCGCCCTATAGCAAAA GGAAATTGGAAATGTATCTCTTTTGTTGCGCACTTTTTTAACACTTAAGC TTAAAGTCGATGGAAGGCTTATGATTAAAGAATAGAAAATAATCAACAAA TTTCAATGCGTACAAATCAATGGCGGTAAACGATTCCCTTGTTCCTTTAG TATTATTATCGTTAGCTGGATTTCTATTTGGAATATATATATTTTTTAAT GTTTAATTTAATCAGATGACAACCAATAAATAAAGGAAATCCAAAATTAA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scat-RA | 3680 | scat-RA | 116..3616 | 1..3501 | 17505 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3901..3970 | 3461..3393 | 122 | 65.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9430400..9430836 | 1..437 | 99 | -> | Plus |
chr2L | 9431216..9434276 | 438..3498 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 1..2823 | 250..3072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 1..2823 | 250..3072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 1..2823 | 250..3072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 1..2823 | 250..3072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 1..2823 | 250..3072 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 59..3556 | 1..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 63..3560 | 1..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 61..3558 | 1..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 59..3556 | 1..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scat-RA | 61..3558 | 1..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9431465..9431901 | 1..437 | 100 | -> | Plus |
2L | 9432281..9435341 | 438..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9431465..9431901 | 1..437 | 100 | -> | Plus |
2L | 9432281..9435341 | 438..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9431465..9431901 | 1..437 | 100 | -> | Plus |
2L | 9432281..9435341 | 438..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9431465..9431901 | 1..437 | 100 | -> | Plus |
arm_2L | 9432281..9435341 | 438..3498 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9431465..9431901 | 1..437 | 100 | -> | Plus |
2L | 9432281..9435341 | 438..3498 | 100 | Plus |
Translation from 249 to 3071
> LD22446.pep MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYC TREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDY DAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWG EHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPL ENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQT SASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHA ILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKL RLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLP MQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAI VMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGH GEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDA VNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSS ASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSER KQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNP VLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRC FNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQ AMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFR HISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNG GPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22733-PA | 936 | GF22733-PA | 1..936 | 1..940 | 4654 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25349-PA | 940 | GG25349-PA | 1..940 | 1..940 | 4975 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13327-PA | 955 | GH13327-PA | 51..955 | 44..940 | 3782 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scat-PA | 940 | CG3766-PA | 1..940 | 1..940 | 4841 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17666-PA | 957 | GI17666-PA | 37..957 | 26..940 | 3914 | 81 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26149-PA | 935 | GL26149-PA | 1..935 | 1..940 | 4366 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17672-PA | 935 | GA17672-PA | 1..935 | 1..940 | 4366 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17451-PA | 940 | GM17451-PA | 1..940 | 1..940 | 5015 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23603-PA | 665 | GD23603-PA | 1..652 | 1..652 | 3458 | 98.8 | Plus |
Dsim\GD23604-PA | 246 | GD23604-PA | 9..246 | 703..940 | 1273 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17862-PA | 946 | GJ17862-PA | 29..946 | 26..940 | 3933 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24205-PA | 934 | GK24205-PA | 1..934 | 1..940 | 3994 | 79.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18840-PA | 940 | GE18840-PA | 1..940 | 1..940 | 4990 | 98.7 | Plus |
Translation from 249 to 3071
> LD22446.hyp MATTRSAGGAATSVDTGPAAGNSGIRKLSTASVGGIAGGVAPSWQSCYYC TREHFKSISDFVNHLRNRHCTREGGSFVCRYGFNGVCASLPLDGVSDRDY DAHVAKYHVNQHTREMPPEWGVYSAAQNLPAVLNDPSRGKQSNLFTKKWG EHFVERSHVPPSPRLPDITHADFTVYLGSIGKRYRWHERRQQQLERDKPL ENGAQGAPGPGTGGQTPTHLSSVPEIFLKSQLQLHHPATFKQVFPNYMQT SASSPESHQQTGRQLQEQLSHYLDMVEVKIAQQVSQKSAAFFHAMTTQHA ILAEMEQAADQVRQLRAALAELHSHSVVDSFKVLRFAQRRQHYNLTLDKL RLMATVHKTQPMLQLLLGTQDYVAALDLIGTTQEILSAELLGIHCFKHLP MQLSEMEKLIDKMLTTEFERYAAADLNRPLTDALRETDSVCAEEDKLVAI VMGLLRKQNFSFVQAYQQEAIATIRAIIKQLLIEVLARSDSDQEISLTGH GEQALELTLPEWIALLQRSSQALVSILERIKTVVGIMQQTADAAVGAQDA VNLIDSEAFLSPGHHEQLKNQLQQLLQAVCHYCHERCANIVSPQSLERSS ASEQELFQLSEIVDHFGETTRSICGVASVPLQLALKVQASRYAQRFHSER KQKLSLLLDQERWRQVDIPHEFQRIIERMAAGDYAKPEMGNLISNGAGNP VLLVEGKQPYTLVSASLMLIRMLYEYGCSAHRLPLLASYHARNVVDLLRC FNSRSCQLIIGAGAMRVAGLKTITSTNLALVSRALQLVLWLLPKLKEHFQ AMSGYETIERDYQGHIKEIENKIHGIVSERLAAQLDAWEARPPIPSQTFR HISRHLVKLHEAIAGVLPEAQIHEIYGVVHRNFKDKLREQLLKLNVNNNG GPQHGVVTSELTFYMETLRTLKALPAEQLDNGILEEIWLY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scat-PA | 940 | CG3766-PA | 1..940 | 1..940 | 4841 | 100 | Plus |