Clone LD22456 Report

Search the DGRC for LD22456

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:224
Well:56
Vector:pOT2
Associated Gene/TranscriptCG2938-RB
Protein status:LD22456.pep: gold
Preliminary Size:3117
Sequenced Size:3246

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2938 2001-11-29 Blastp of sequenced clone
CG2938 2003-01-01 Sim4 clustering to Release 3
CG2938 2008-04-29 Release 5.5 accounting
CG2938 2008-08-15 Release 5.9 accounting
CG2938 2008-12-18 5.12 accounting

Clone Sequence Records

LD22456.complete Sequence

3246 bp (3246 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069500

> LD22456.complete
CGATAGGAGGAGTCGGTCGCTGCCTAAGGAACAAGCGGAACTGGGTTAAA
ACATGCCCATGCAATAGGCCAAATTATCTATATTATAGGCCAGACTTTCC
GTCGCAGACCGTTTGGTGGTGGCGGTGGAGAAGGCGGCAGACGGCTTATA
AATTATGGAGCTACGCGAACTGCGCGGTGGAAATGGTGGAAGCGTAGGAG
GCATTGGAGCAGCTACAACCGGAACCCCCGGAGTGTCAGTGAATGGAGCC
CCTAGTCCCGAACTAGGCGGCATCTGCATTGGAGGCGCCGCCGGAGGACA
GCGTATGCCCACCAGAGCGGATATATTTATGGAACAACTAAACGCCACCA
ATGCCAAGAAGGTGGCTTTGCTTCTGGTCCTCGGCTTCATCGTCTATCAC
GGCCTGCTCAACTGGAAATACGGCAGTGACTCCTGCCAGTGGCTGCTGTC
CAAGGGCCGATTTAAGGGCGACAACGAGTGGCAGCCGTACGGTTGCATGG
TGCACAAGTACTCCCTCACTGACACAAGGCGCTGTTTGCGTTACCTCGCC
TTCTTCGACAACAAGAACAACTTTGTGTTCATTGGCGACGAGAGTATACG
GCTGCTCTACGAACGATTTGTGGAGCAACTTCGCCTGCCATTGGCCGCGG
ATGAAATGGCCGACGAGGAGGACAATAACGCCTCGGTGACTGATGGCTCA
GCCCGTTTCGAGGACAAGAAGCTGCATATGCTGGCCCAGTACATTCGGGC
GGAGGAGGTGAGTCCGTCGCTTGTGGAGCAACTGTACCGTCTGGAGTCTG
AGAAGCAGCTGTCCTCTGTGTACGTTGTGGGCTTCACCTATGCCGGCTTG
CTCGCTGGCAACACCACAGACGATGTGCTGCGGCAATATGCCGCCAATCT
TACATTGCTGGTGGCTCCGTTTCATCGCCTGGTGGCGCAAACTTCGCGGG
TCCTCTGGAAGCTAGCAGACCGCGTGGACGAGGAGAAATTGCCCGCGCAC
TGGAAGCTGCTCCAGAACGAGCAAATCGATCGATTAAACCATGTGGCCAG
AGGAGTTTTTCGCTACACGGAGGCAAGTGTTTGGGAATCCGCCTGGCACA
TAGCCAATGGTTTGCTGGACAACGCCATCGATGGTCATCAGCTGTGCGCC
CATGGCCAGCGACTGGAGGTTCAGCTACTGTGGAACATGTACTGCAATGA
CTACATGAACTACAATGATGGCACCTGCTGCAGCAGTTCTGAGCCATACA
CCACGCTGCAAATAGTGGCATACGCCTTGTTTGGCGTCTGTATGGCGCTT
GTGTGTGGCATGTGTCTGCGCAGATGGGTGCTTCACCTGCGGGGCCAGAC
TTTGTATGTGCCCCTGCAGCAGCAGCAATCTTACGACGGGGGAAGAGCAG
GTGGAGGATCACCGAGCAATGCCTTATCCGCTCTGATAACCGACTATGGC
ACTCCCATGGTGGCGCTATCACTGCTGGGCCTAATTTTGGCCTATTTCTA
CCTCTGCGATCGCACAAACTTCTTTATGAAGGAGAACAAATACTATTCTG
AGTTTAGCTTCTGGATACCAGTGGGCTATGTCTTCGCACTCGGATTGTTT
TTTACGGAAGATTCACGGTTCACTAAGGTGCTCAATCGCGATCAAACGGA
TGAACTGCGTGGCTGGATACTGCTGGTGGTGCTTATATATTACATGACCG
GAGCACAGCGAGTGCTGCCCATTCACATGCACATTAAGCTGTTGATCTCA
GGATACTTTTTCCTTACCGGATACACGCACTTCACGCATATGTGGCAAAC
GGGTGGCAGTGGCTCCCTATTCGTACGCTTTTTCCAGGCCATGTTCCGGG
CAAACTTTCTCAGTGTACTGCTGTGCTTCTGCATGAACCGGCCGTATCAG
TTCTACTATTTTGTGCCACTACTATCCTTTTGGCTGTGCATCGTATACTT
TGTGCTCGCACTGCCGCCACGAATTTCGTCCGCATCGGTGGACGCCAATC
CGCTGCACTATCTGTATTTGGTGTGCAAGTGCATTGGTTGCCTGGGCGGC
ATCACGGTGCTCTTCATGTCGGAGGTATTCTTCGAACGGATATTCGTAAC
GCGACCGTGGAAAGCGTTGTTTGTGACCACTGACGACGACCTGCACGAGT
GGTGGCATCAGTGGAAACTGGACCGGTATACGGTGGCCTTTGGCATGATA
TATGCCGCCTGCTTTCACATTGCCCAAAAGTACAATGTGTTCGATGACAA
CAACCATGGGAATCTGTTTTCGCGAAGGACATCAATATCAGTCACATTGC
TGGCCCTGCTGGGCGTCGGGGTGTACACTTCGTTCTCGTTCCTTTGCCGC
AACGTTCAGAACTGTGAGGAGATCCATTCGTATATACTGTTCATCCCGAT
TGTGGGCTATGTGGTCCTCAGGAACATTTCGGGTATTCTACGTACACGAT
ACTCGGCGTTCTTCGCCTGGTTTGGCCGCATCTCGTTGGAGCTGTTCGTC
TGCCAGTATCATATTTGGCTGGCCGCCGATCGGCATGGAGTTCTGGTGCT
GCTGCCCGGTTTCCCGACGCTCAACATGATCATTACATCGTTCATATTTG
TGTGCGCATCGCACGAGGTGCACCGCCTCACCCAAATCCTGCTGCCGTAT
GCGGTGCCCAGCGACTGGCGTCTGGTCATGCGAAATTTCGTCATCTTCCT
CATCGTGCTCATACCCGTCGCCCGATCGGATGGCATGTTCTGATCCTGAG
CGATTCGCAATCCAATTGCCGCCCAGGTATTGACCCAAAGTATTCGATAG
ATAGCATAGCCTATTCGGCAAATATGGAACGAACTTAATTGTTTAACGTC
AGGGTGGAACGGTTCTGTATTTAAGCTTATGACCTTAAAATCCATTTGCC
ATATCTCGATATTTTTTTAAAAGATACTTAACTCTAAGGCCATGGGTCAA
ATATTTGTTTTCGTTTTGCCTAAGAAACCCCGGGATCTGGCATTTTTGCT
AAGATTCAGACAAGACAATAATTTAATTTGTTAATGTATGTGTATATCGG
AATTATTTGCGCCGATGTATACAGCCTAGGGTTAACTTAGCCTTAATTAA
ATTTTGCACAAATTACTTAACAACTCACCCAACCAAACACACTCACACTC
AAACATAAGCAGCGGCAAACCAAATGTATGTATAAAGCAAGAGAATAAAG
CAATGGATATACACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD22456.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG2938-RB 3758 CG2938-RB 101..3137 1..3037 15185 100 Plus
CG2938.a 3932 CG2938.a 101..3137 1..3037 15185 100 Plus
CG2938-RB 3758 CG2938-RB 3461..3644 3034..3217 920 100 Plus
CG2938.a 3932 CG2938.a 3461..3644 3034..3217 920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 3825984..3828501 3037..520 12500 99.8 Minus
chrX 22417052 chrX 3829051..3829473 423..1 2100 99.8 Minus
chrX 22417052 chrX 3825478..3825660 3216..3034 915 100 Minus
chrX 22417052 chrX 3828582..3828679 519..422 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3932662..3935179 3037..520 12590 100 Minus
X 23542271 X 3935729..3936151 423..1 2115 100 Minus
X 23542271 X 3932155..3932338 3217..3034 920 100 Minus
X 23542271 X 3935260..3935357 519..422 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 3940760..3943277 3037..520 12590 100 Minus
X 23527363 X 3943827..3944249 423..1 2115 100 Minus
X 23527363 X 3940253..3940436 3217..3034 920 100 Minus
X 23527363 X 3943358..3943455 519..422 490 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:32:34 has no hits.

LD22456.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:33:48 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 3828582..3828678 423..519 100 <- Minus
chrX 3825478..3825658 3036..3216 100 <- Minus
chrX 3825986..3828501 520..3035 99 <- Minus
chrX 3829052..3829473 1..422 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:37 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 1..2589 155..2743 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:22 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 1..2589 155..2743 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:52:14 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 1..2589 155..2743 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:39 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 1..2589 155..2743 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:18 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 1..2589 155..2743 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:15 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 3151..3333 3034..3216 100   Plus
CG2938-RB 101..3133 1..3033 100 -- Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:22 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 3463..3643 3036..3216 100   Plus
CG2938-RB 101..3135 1..3035 100 -> Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:52:14 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 77..3111 1..3035 100 -> Plus
CG2938-RB 3439..3619 3036..3216 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:39 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 101..3133 1..3033 100 -- Plus
CG2938-RB 3151..3333 3034..3216 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:18 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
CG2938-RB 77..3111 1..3035 100 -> Plus
CG2938-RB 3439..3619 3036..3216 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:48 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
X 3932156..3932336 3036..3216 100 <- Minus
X 3932664..3935179 520..3035 100 <- Minus
X 3935260..3935356 423..519 100 <- Minus
X 3935730..3936151 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:48 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
X 3932156..3932336 3036..3216 100 <- Minus
X 3932664..3935179 520..3035 100 <- Minus
X 3935260..3935356 423..519 100 <- Minus
X 3935730..3936151 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:48 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
X 3932156..3932336 3036..3216 100 <- Minus
X 3932664..3935179 520..3035 100 <- Minus
X 3935260..3935356 423..519 100 <- Minus
X 3935730..3936151 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:52:14 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3826189..3826369 3036..3216 100 <- Minus
arm_X 3826697..3829212 520..3035 100 <- Minus
arm_X 3829293..3829389 423..519 100 <- Minus
arm_X 3829763..3830184 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:23:01 Download gff for LD22456.complete
Subject Subject Range Query Range Percent Splice Strand
X 3940762..3943277 520..3035 100 <- Minus
X 3943358..3943454 423..519 100 <- Minus
X 3943828..3944249 1..422 100   Minus
X 3940254..3940434 3036..3216 100 <- Minus

LD22456.pep Sequence

Translation from 154 to 2742

> LD22456.pep
MELRELRGGNGGSVGGIGAATTGTPGVSVNGAPSPELGGICIGGAAGGQR
MPTRADIFMEQLNATNAKKVALLLVLGFIVYHGLLNWKYGSDSCQWLLSK
GRFKGDNEWQPYGCMVHKYSLTDTRRCLRYLAFFDNKNNFVFIGDESIRL
LYERFVEQLRLPLAADEMADEEDNNASVTDGSARFEDKKLHMLAQYIRAE
EVSPSLVEQLYRLESEKQLSSVYVVGFTYAGLLAGNTTDDVLRQYAANLT
LLVAPFHRLVAQTSRVLWKLADRVDEEKLPAHWKLLQNEQIDRLNHVARG
VFRYTEASVWESAWHIANGLLDNAIDGHQLCAHGQRLEVQLLWNMYCNDY
MNYNDGTCCSSSEPYTTLQIVAYALFGVCMALVCGMCLRRWVLHLRGQTL
YVPLQQQQSYDGGRAGGGSPSNALSALITDYGTPMVALSLLGLILAYFYL
CDRTNFFMKENKYYSEFSFWIPVGYVFALGLFFTEDSRFTKVLNRDQTDE
LRGWILLVVLIYYMTGAQRVLPIHMHIKLLISGYFFLTGYTHFTHMWQTG
GSGSLFVRFFQAMFRANFLSVLLCFCMNRPYQFYYFVPLLSFWLCIVYFV
LALPPRISSASVDANPLHYLYLVCKCIGCLGGITVLFMSEVFFERIFVTR
PWKALFVTTDDDLHEWWHQWKLDRYTVAFGMIYAACFHIAQKYNVFDDNN
HGNLFSRRTSISVTLLALLGVGVYTSFSFLCRNVQNCEEIHSYILFIPIV
GYVVLRNISGILRTRYSAFFAWFGRISLELFVCQYHIWLAADRHGVLVLL
PGFPTLNMIITSFIFVCASHEVHRLTQILLPYAVPSDWRLVMRNFVIFLI
VLIPVARSDGMF*

LD22456.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21094-PA 875 GF21094-PA 52..875 49..862 4109 93.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18568-PA 866 GG18568-PA 1..866 1..862 4502 97 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17907-PA 907 GH17907-PA 42..907 36..862 3773 81.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2938-PD 862 CG2938-PD 1..862 1..862 4600 100 Plus
CG2938-PC 862 CG2938-PC 1..862 1..862 4600 100 Plus
CG2938-PB 862 CG2938-PB 1..862 1..862 4600 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16046-PA 853 GI16046-PA 18..853 34..862 3728 83.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14546-PA 825 GL14546-PA 1..809 1..804 3568 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15532-PA 866 GA15532-PA 1..866 1..862 4030 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12710-PA 862 GM12710-PA 1..862 1..862 4545 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16317-PA 859 GD16317-PA 1..859 1..862 4546 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15558-PA 857 GJ15558-PA 19..857 36..862 3766 84.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10363-PA 364 GK10363-PA 1..360 1..370 1491 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16879-PA 868 GE16879-PA 1..868 1..862 4461 96 Plus

LD22456.hyp Sequence

Translation from 154 to 2742

> LD22456.hyp
MELRELRGGNGGSVGGIGAATTGTPGVSVNGAPSPELGGICIGGAAGGQR
MPTRADIFMEQLNATNAKKVALLLVLGFIVYHGLLNWKYGSDSCQWLLSK
GRFKGDNEWQPYGCMVHKYSLTDTRRCLRYLAFFDNKNNFVFIGDESIRL
LYERFVEQLRLPLAADEMADEEDNNASVTDGSARFEDKKLHMLAQYIRAE
EVSPSLVEQLYRLESEKQLSSVYVVGFTYAGLLAGNTTDDVLRQYAANLT
LLVAPFHRLVAQTSRVLWKLADRVDEEKLPAHWKLLQNEQIDRLNHVARG
VFRYTEASVWESAWHIANGLLDNAIDGHQLCAHGQRLEVQLLWNMYCNDY
MNYNDGTCCSSSEPYTTLQIVAYALFGVCMALVCGMCLRRWVLHLRGQTL
YVPLQQQQSYDGGRAGGGSPSNALSALITDYGTPMVALSLLGLILAYFYL
CDRTNFFMKENKYYSEFSFWIPVGYVFALGLFFTEDSRFTKVLNRDQTDE
LRGWILLVVLIYYMTGAQRVLPIHMHIKLLISGYFFLTGYTHFTHMWQTG
GSGSLFVRFFQAMFRANFLSVLLCFCMNRPYQFYYFVPLLSFWLCIVYFV
LALPPRISSASVDANPLHYLYLVCKCIGCLGGITVLFMSEVFFERIFVTR
PWKALFVTTDDDLHEWWHQWKLDRYTVAFGMIYAACFHIAQKYNVFDDNN
HGNLFSRRTSISVTLLALLGVGVYTSFSFLCRNVQNCEEIHSYILFIPIV
GYVVLRNISGILRTRYSAFFAWFGRISLELFVCQYHIWLAADRHGVLVLL
PGFPTLNMIITSFIFVCASHEVHRLTQILLPYAVPSDWRLVMRNFVIFLI
VLIPVARSDGMF*

LD22456.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2938-PD 862 CG2938-PD 1..862 1..862 4600 100 Plus
CG2938-PC 862 CG2938-PC 1..862 1..862 4600 100 Plus
CG2938-PB 862 CG2938-PB 1..862 1..862 4600 100 Plus