Clone LD22520 Report

Search the DGRC for LD22520

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:225
Well:20
Vector:pOT2
Associated Gene/TranscriptRcc1-RA
Protein status:LD22520.pep: gold
Preliminary Size:2287
Sequenced Size:2167

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10480 2001-01-01 Release 2 assignment
CG10480 2001-12-12 Blastp of sequenced clone
CG10480 2003-01-01 Sim4 clustering to Release 3
Bj1 2008-04-29 Release 5.5 accounting
Bj1 2008-08-15 Release 5.9 accounting
Bj1 2008-12-18 5.12 accounting

Clone Sequence Records

LD22520.complete Sequence

2167 bp (2167 high quality bases) assembled on 2001-12-12

GenBank Submission: AY070540

> LD22520.complete
CCGCTTCCCGCGCATTTTCTTCGACCCAGGTAGGTCGCATTGGGATTCGC
TTGCATTTGGTGTTTTCACTCGCCTCCAAACCGCCGTAGCAACACCATCT
AGACAACGTGGAACTCCCGCTGAACCAGAGACCGGCATTATTTCCATTTT
TCGGTGACAAAAAATTGTGAAAATACAAGCTAAAATGCCGCGCAGAAAGG
CCCTGACTAATAACAACAATGCCGGCGAAGCGGAGCAGCAGCCACCGAAG
GCGAAGCGCGCCAGAATCGCTTTTCATCTGGAGCTGCCCAAGCGGAGGAC
CGTGCTCGGCAACGTGCTAGTCTGCGGCAACGGCGATGTGGGCCAACTTG
GTCTCGGCGAGGACATACTGGAGCGCAAGCGTCTCAGCCCTGTGGCGGGC
ATCCCGGATGCCGTGGACATATCCGCCGGTGGCATGCACAACCTGGTGCT
GACCAAGTCAGGGGACATTTACTCATTCGGTTGCAATGACGAAGGTGCTC
TAGGCCGTGACACCAGCGAGGATGGCAGCGAGTCAAAGCCGGATCTTATC
GATTTGCCCGGCAAGGCTCTGTGCATTTCGGCGGGAGACTCGCATTCCGC
TTGTCTGCTGGAGGATGGCCGTGTCTTCGCTTGGGGCTCGTTCCGGGACT
CTCATGGCAACATGGGCCTCACCATCGATGGTAACAAGCGTACGCCCATC
GATCTGATGGAGGGCACTGTCTGTTGTAGCATCGCGTCCGGCGCCGATCA
TTTGGTCATCCTGACCACTGCCGGAAAGGTCTTTACCGTGGGCTGCGCTG
AGCAGGGACAACTCGGCCGGCTGTCGGAGCGTTCCATCTCCGGAGAGGGT
CGTCGTGGCAAACGCGACTTGCTGCGGCCCACCCAGCTCATCATCACGCG
GGCCAAACCTTTTGAGGCCATCTGGGCCACCAACTACTGCACATTCATGC
GCGAGTCACAGACACAGGTCATCTGGGCCACAGGGCTTAACAACTTCAAG
CAGCTGGCCCACGAGACAAAGGGCAAGGAGTTCGCACTGACGCCCATCAA
GACGGAACTCAAAGATATCCGACATATTGCCGGCGGTCAGCACCATACTG
TCATCCTGACAACGGACCTTAAGTGTTCCGTAGTGGGTCGTCCGGAGTAC
GGTCGGCTTGGTCTGGGCGATGTCAAGGATGTTGTGGAGAAGCCAACGAT
TGTAAAGAAGCTGACCGAAAAGATTGTGTCCGTTGGATGTGGCGAAGTCT
GTTCCTATGCCGTTACAATTGATGGCAAACTGTATTCCTGGGGCTCCGGT
GTCAACAATCAACTAGGCGTTGGCGACGGCGATGATGAGCTCGAACCGAT
CGTGGTTGTCAGCAAGAACACGCAGGGGAAGCACATGCTGCTCGCATCTG
GCGGTGGTCAGCACGCAATCTTTTTGGTCAAAGCGGACAAACAGGACCAG
AAGGAGAATGTTCCAGTGAAGGTGTCTGGCAGCAGCAGCATCAGTAAAAA
GGACAAGACCCCGCCGCAGGATAATGTCGACAAGGAAGCCGAGAATGTAG
ATAAGCAGGAGCAGAAGGAAAACTTGCCGGCGAAGGCGTCAACCAGCAGC
AAAAAGAACAAGACGCCGCCGCAGGATAATGCCGACAAGGAAGCCGAGAA
TGTAGATAAGCAGGAGCAGAAGGAAAACTTGCCGGCGAAGGCGTCAACCA
GCAGCAAAAAGATTAAGACGCCGCCGCAGGATGATGCCGCCGAGGAGGTC
GAAGAGGAGTCTGCTCAGGAACCGACTCCCAAGAAGGCCAAGAAGCCTGC
TGCCAAGCGGGGCGGTAAAAAGACATAAGATTGAGTATAAATACGCTGAC
TTTCCCACTTTGTTTTTGGTAACACTAAGTTACGAACCCGTACGCTTACC
CTACGCTTAAGGAAGGCAATGAGTAGCCCAGATTCGTAAGATAGATCGGA
AATTTTGCTTATTGTACGTTAAGATCTACGAACTGAATCCTGTTAAGTTC
TTTTTATTTTGATAAATAGATGCCCGCTTATATCTTACAAGTCTGCCTAA
AGACGAAAACTTCTTTATCAATCCAACTAAGTGTTTATTATATATATTCG
TTCGCAATACGAAGCCGTAGTAAATTTGTATTTGAACGCAAAAGGAAAAA
AAAAAAAAAAAAAAAAA

LD22520.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
Bj1-RA 2482 Bj1-RA 221..2368 1..2148 10740 100 Plus
Bj1-RB 2413 Bj1-RB 239..2299 88..2148 10305 100 Plus
Bj1-RC 2140 Bj1-RC 144..2140 149..2145 9985 100 Plus
Bj1-RB 2413 Bj1-RB 212..240 1..29 145 100 Plus
Bj1-RC 2140 Bj1-RC 115..143 1..29 145 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5922858..5924155 2145..848 6475 99.9 Minus
chr3L 24539361 chr3L 5924212..5924913 850..149 3450 99.4 Minus
chr3L 24539361 chr3L 5925002..5925149 148..1 740 100 Minus
chrX 22417052 chrX 10791171..10791370 2145..1948 725 92 Minus
chr3L 24539361 chr3L 5923257..5923406 1641..1492 615 94 Minus
chr3L 24539361 chr3L 5923362..5923511 1746..1597 600 93.3 Minus
chrX 22417052 chrX 10791367..10791478 1914..1783 265 81.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5930259..5931559 2148..848 6505 100 Minus
3L 28110227 3L 5931616..5932317 850..149 3510 100 Minus
3L 28110227 3L 5932406..5932553 148..1 740 100 Minus
X 23542271 X 10899849..10900051 2148..1948 740 92.1 Minus
3L 28110227 3L 5930661..5930810 1641..1492 615 94 Minus
3L 28110227 3L 5930766..5930915 1746..1597 615 94 Minus
X 23542271 X 10900048..10900159 1914..1783 265 81.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:15:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5923359..5924659 2148..848 6505 100 Minus
3L 28103327 3L 5924716..5925417 850..149 3510 100 Minus
3L 28103327 3L 5925506..5925653 148..1 740 100 Minus
X 23527363 X 10908022..10908149 2075..1948 580 96.8 Minus
X 23527363 X 10907947..10908004 2148..2091 275 98.2 Minus
X 23527363 X 10908201..10908257 1839..1783 255 96.4 Minus
X 23527363 X 10908146..10908200 1914..1860 245 96.3 Minus
Blast to na_te.dros performed on 2019-03-16 11:25:08 has no hits.

LD22520.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:26:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5922858..5924154 849..2145 99 <- Minus
chr3L 5924214..5924913 149..848 99 <- Minus
chr3L 5925002..5925149 1..148 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:40 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RC 1..1644 185..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:17:33 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RC 1..1644 185..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:16:47 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Rcc1-RA 1..1644 185..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:43:37 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RC 1..1644 185..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Rcc1-RA 1..1644 185..1828 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:50:14 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RA 221..2365 1..2145 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:17:33 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RA 221..2365 1..2145 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:16:47 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Rcc1-RA 221..2365 1..2145 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:43:37 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Bj1-RA 221..2365 1..2145 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
Rcc1-RA 221..2365 1..2145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5930262..5931558 849..2145 100 <- Minus
3L 5931618..5932317 149..848 100 <- Minus
3L 5932406..5932553 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5930262..5931558 849..2145 100 <- Minus
3L 5931618..5932317 149..848 100 <- Minus
3L 5932406..5932553 1..148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:20 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5930262..5931558 849..2145 100 <- Minus
3L 5931618..5932317 149..848 100 <- Minus
3L 5932406..5932553 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:16:47 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5923362..5924658 849..2145 100 <- Minus
arm_3L 5924718..5925417 149..848 100 <- Minus
arm_3L 5925506..5925653 1..148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:19:50 Download gff for LD22520.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5923362..5924658 849..2145 100 <- Minus
3L 5924718..5925417 149..848 100 <- Minus
3L 5925506..5925653 1..148 100   Minus

LD22520.pep Sequence

Translation from 184 to 1827

> LD22520.pep
MPRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNG
DVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC
NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAW
GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF
TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN
YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG
GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV
GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKH
MLLASGGGQHAIFLVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNVDK
EAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLP
AKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKT*

LD22520.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10433-PA 477 GF10433-PA 1..463 1..469 1696 69.1 Plus
Dana\GF24453-PA 1058 GF24453-PA 4..350 42..392 253 29 Plus
Dana\GF19414-PA 5087 GF19414-PA 4312..4601 127..427 190 26.3 Plus
Dana\GF24453-PA 1058 GF24453-PA 1..177 193..379 168 31.1 Plus
Dana\GF19414-PA 5087 GF19414-PA 3110..3418 77..392 158 23.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14100-PA 515 GG14100-PA 1..514 1..546 2424 89.1 Plus
Dere\GG14780-PA 1058 GG14780-PA 4..350 42..392 240 29 Plus
Dere\GG19286-PA 4908 GG19286-PA 4133..4422 127..427 186 25.7 Plus
Dere\GG24626-PA 454 GG24626-PA 162..423 79..332 175 26.8 Plus
Dere\GG14780-PA 1058 GG14780-PA 1..182 193..384 164 29.2 Plus
Dere\GG19286-PA 4908 GG19286-PA 3019..3327 77..392 162 23.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16887-PA 495 GH16887-PA 1..429 1..427 1752 75.3 Plus
Dgri\GH15214-PA 1052 GH15214-PA 3..332 45..378 245 29.9 Plus
Dgri\GH17927-PA 4933 GH17927-PA 4106..4447 77..427 189 26.2 Plus
Dgri\GH15214-PA 1052 GH15214-PA 57..173 263..379 174 38.8 Plus
Dgri\GH17927-PA 4933 GH17927-PA 2948..3256 77..392 163 23.1 Plus
Dgri\GH10494-PA 455 GH10494-PA 163..424 79..332 162 24.6 Plus
Dgri\GH17927-PA 4933 GH17927-PA 2964..3275 42..359 156 26.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rcc1-PC 547 CG10480-PC 1..547 1..547 2838 100 Plus
Rcc1-PB 547 CG10480-PB 1..547 1..547 2838 100 Plus
Rcc1-PA 547 CG10480-PA 1..547 1..547 2838 100 Plus
Herc4-PA 1058 CG9153-PA 4..350 42..392 249 28.2 Plus
Herc4-PB 1058 CG9153-PB 4..350 42..392 249 28.2 Plus
Herc4-PC 1062 CG9153-PC 4..355 42..392 244 27.9 Plus
HERC2-PC 4912 CG11734-PC 4088..4426 81..427 224 24.9 Plus
HERC2-PC 4912 CG11734-PC 2988..3406 44..464 197 22.4 Plus
Herc4-PA 1058 CG9153-PA 1..216 193..417 180 27.5 Plus
Herc4-PB 1058 CG9153-PB 1..216 193..417 180 27.5 Plus
Herc4-PC 1062 CG9153-PC 1..221 193..417 179 26.8 Plus
CG3862-PA 454 CG3862-PA 162..423 79..332 177 26.8 Plus
HERC2-PC 4912 CG11734-PC 4152..4415 39..310 172 26.1 Plus
Herc4-PA 1058 CG9153-PA 7..265 147..414 169 25.6 Plus
Herc4-PB 1058 CG9153-PB 7..265 147..414 169 25.6 Plus
Herc4-PC 1062 CG9153-PC 7..270 147..414 166 26 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12030-PA 486 GI12030-PA 1..428 1..427 1758 75.5 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 3..332 45..378 251 29.9 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 105..280 42..212 190 32.2 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 57..178 263..384 182 38.1 Plus
Dmoj\GI16306-PA 5077 GI16306-PA 4302..4591 127..427 182 25.1 Plus
Dmoj\GI13052-PA 1053 GI13052-PA 2..425 94..517 176 25.7 Plus
Dmoj\GI16306-PA 5077 GI16306-PA 3062..3405 43..392 175 25.3 Plus
Dmoj\GI16306-PA 5077 GI16306-PA 3113..3424 42..359 156 26.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21365-PA 528 GL21365-PA 1..526 1..546 1762 63.5 Plus
Dper\GL12502-PA 462 GL12502-PA 1..459 1..455 1528 64.5 Plus
Dper\GL21413-PA 402 GL21413-PA 4..402 22..421 1385 67 Plus
Dper\GL26225-PA 361 GL26225-PA 11..346 30..418 893 49.7 Plus
Dper\GL16177-PA 1052 GL16177-PA 3..395 45..446 224 25.4 Plus
Dper\GL16177-PA 1052 GL16177-PA 102..280 39..212 191 32 Plus
Dper\GL16177-PA 1052 GL16177-PA 55..314 42..309 180 28 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10341-PA 530 GA10341-PA 1..526 1..546 1759 63.5 Plus
Dpse\GA27527-PA 462 GA27527-PA 1..459 1..455 1518 64.3 Plus
Dpse\GA28548-PA 338 GA28548-PA 1..338 87..421 1206 68 Plus
Dpse\GA28084-PA 357 GA28084-PA 11..342 30..418 876 49.7 Plus
Dpse\GA28417-PA 1052 GA28417-PA 3..395 45..446 225 25.4 Plus
Dpse\GA28417-PA 1052 GA28417-PA 102..280 39..212 191 32 Plus
Dpse\GA28417-PA 1052 GA28417-PA 55..346 42..348 179 27.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13884-PA 545 GM13884-PA 1..545 1..547 2834 98 Plus
Dsec\GM14399-PA 1058 GM14399-PA 4..350 42..392 240 28.5 Plus
Dsec\GM23028-PA 725 GM23028-PA 17..192 39..211 163 33 Plus
Dsec\GM23027-PA 3806 GM23027-PA 2677..2985 77..392 161 24.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13166-PA 564 GD13166-PA 1..544 1..544 2732 95.6 Plus
Dsim\GD13608-PA 1058 GD13608-PA 4..350 42..392 238 28.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13299-PA 485 GJ13299-PA 1..428 1..427 1815 77.4 Plus
Dvir\GJ12148-PA 1053 GJ12148-PA 3..346 45..392 239 28.8 Plus
Dvir\GJ12148-PA 1053 GJ12148-PA 102..280 39..212 192 31.1 Plus
Dvir\GJ15642-PA 5062 GJ15642-PA 4287..4576 127..427 187 26.6 Plus
Dvir\GJ15642-PA 5062 GJ15642-PA 3081..3389 77..392 168 24.9 Plus
Dvir\GJ15642-PA 5062 GJ15642-PA 3097..3408 42..359 155 26.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17526-PA 482 GK17526-PA 1..459 1..451 1722 71.6 Plus
Dwil\GK15861-PA 469 GK15861-PA 1..451 1..451 1525 63.3 Plus
Dwil\GK20388-PA 1054 GK20388-PA 3..332 45..378 226 27.9 Plus
Dwil\GK22640-PA 1261 GK22640-PA 60..321 63..337 205 28.7 Plus
Dwil\GK20144-PA 4996 GK20144-PA 4234..4523 127..427 186 26.3 Plus
Dwil\GK22640-PA 1261 GK22640-PA 19..312 68..370 174 25.4 Plus
Dwil\GK20144-PA 4996 GK20144-PA 3063..3371 77..392 165 23.6 Plus
Dwil\GK22640-PA 1261 GK22640-PA 30..300 131..404 162 24.7 Plus
Dwil\GK20388-PA 1054 GK20388-PA 187..340 66..219 159 31 Plus
Dwil\GK20388-PA 1054 GK20388-PA 3..173 199..379 158 31.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20522-PA 515 GE20522-PA 1..491 1..488 2358 93.5 Plus
Dyak\GE21143-PA 1057 GE21143-PA 4..350 42..392 242 28.5 Plus
Dyak\GE17877-PA 2660 GE17877-PA 1885..2174 127..427 188 25.7 Plus
Dyak\GE15898-PA 454 GE15898-PA 161..423 78..332 178 26.7 Plus
Dyak\GE21143-PA 1057 GE21143-PA 6..318 94..415 170 26.2 Plus
Dyak\GE17877-PA 2660 GE17877-PA 768..1076 77..392 162 23.9 Plus
Dyak\GE17877-PA 2660 GE17877-PA 784..1095 42..359 156 26.1 Plus

LD22520.hyp Sequence

Translation from 184 to 1827

> LD22520.hyp
MPRRKALTNNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNG
DVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC
NDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAW
GSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVF
TVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN
YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG
GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSV
GCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQGKH
MLLASGGGQHAIFLVKADKQDQKENVPVKVSGSSSISKKDKTPPQDNVDK
EAENVDKQEQKENLPAKASTSSKKNKTPPQDNADKEAENVDKQEQKENLP
AKASTSSKKIKTPPQDDAAEEVEEESAQEPTPKKAKKPAAKRGGKKT*

LD22520.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rcc1-PC 547 CG10480-PC 1..547 1..547 2838 100 Plus
Rcc1-PB 547 CG10480-PB 1..547 1..547 2838 100 Plus
Rcc1-PA 547 CG10480-PA 1..547 1..547 2838 100 Plus
CG9153-PA 1058 CG9153-PA 4..350 42..392 249 28.2 Plus
CG9153-PB 1058 CG9153-PB 4..350 42..392 249 28.2 Plus
CG9153-PA 1058 CG9153-PA 1..216 193..417 180 27.5 Plus
CG9153-PA 1058 CG9153-PA 7..265 147..414 169 25.6 Plus