Clone LD22559 Report

Search the DGRC for LD22559

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:225
Well:59
Vector:pOT2
Associated Gene/TranscriptCG18012-RA
Protein status:LD22559.pep: gold
Preliminary Size:1300
Sequenced Size:1625

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18012 2001-01-01 Release 2 assignment
CG18012 2002-05-16 Blastp of sequenced clone
CG18012 2003-01-01 Sim4 clustering to Release 3
CG18012 2008-04-29 Release 5.5 accounting
CG18012 2008-08-15 Release 5.9 accounting
CG18012 2008-12-18 5.12 accounting

Clone Sequence Records

LD22559.complete Sequence

1625 bp (1625 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118918

> LD22559.complete
CAGGATTCAACCGAATCACAAACAAAACGCGCAATTCCCTTTGATCGCAG
ATAAAGCGCTTATTTTTCTTGCCCAGCGATGGCGGAAGTGCTGCCCAAGA
AGCGCAACGCCTGCGTCATCGTGCTGGGCGACATTGGACGCAGTCCGCGC
ATGCAGTACCATGCCCAGAGTCTTCTCGAGGAGAACTACCACGTGGACAT
GATTGGGTATCTGGAGACGAGGCCGCTGGAGGAACTGACTCAACATCCAC
GTTGCCGAATCCACGAGCTAACTGCCGTCCCAGTGACGAACCTAACACCC
AAACTGCGCCTGCTCTTCAAGGCCTTTTGGCAGACGCTCAGTCTGCTGAT
GGCTCTCATCTCCATTGGCCGTCCCAGCTTCCTACTCGTCCAGAATCCGC
CCGGCATTCCCACGCTGATTGTGTGCTATCTGTACTGTGCGGTCACACGA
ACCAAGCTGGCCATCGATTGGCACAACTACACGTACACAGTGCTGGCATT
GGGAATGTCGAAGGGAGAGCAGAGTCCTCTAATACGATTGGTTAGGCGAC
TGGAGCGATACTTCGGCTCCAAGGCACACACACACTTCTGTGTGACGCGG
GCCATGCAAGAGGATCTGCAGCAAAACTGGGGCATTGGGCCTGTCAAAGT
TCTGTATGATCGTGCGCCCGCGCAATTCCATCCCATCGACTTGACTCACA
AGCACGAGCTGTACCTGAAGCTGGCCAAAGACTACCCACAGTTCCAGGCC
AAGGACGCCGAACAATCCGATGTTCTGGAGGCCACCGCTCTTACCCAAAA
GCTGGCCAGCGGTGTTGTGCAGTACAGACCACAGCGACAAGCCGTGCTGG
TTTCCAGCACCAGTTGGACGCCGGACGAGGACTTCGGTATACTGCTTAAG
GCTTTGCAAGCTTACGAGGAGACTGCGCAAGCAGAGCCGTTGGTTTATCC
TTCCCTGCTGTGTATCATCACCGGAAAGGGGCCACAAAAGGAGCACTATG
TGGCGGAGATCGAGAAGCTGCAATGGCAGAAGGTGTCGGTGATCACGCCC
TGGCTAGAGATCGAGGACTACCCCACTGTTCTGGCCAGCGCCGACCTGGG
CGTGTGTCTGCACTGGAGCACCAGTGGGCTCGACCTGCCCATGAAGGTGG
TCGACATGTTCGGCAGCGGGCTGCCTGTCTGCGCCTACGATTTCAAGTGC
CTGGATGAGCTGGTGAAGCACGGCGAGAATGGCTTCGTGTTTGGCGACCA
TGTTCAGCTGGCCGAGCAGCTGAGGATTTGGTTCGAAAATTTTCCAAAGA
ATCCCAGCATCCTGGAGACAAGAGCTGGTTTTCAGCGCAAAATCCAGGAG
TTCCAGGAGCTGCGATGGCGGGAGAGTTGGCGCCTGATCGCGGCCCCCGT
ACTGGAGGCATTTCTATAGAGCATTTTGACAAAGATTTGACAATTACACG
TTATGAGAGACTTCCTTTGATTGCTAATCGCTTTTTCTAGGCTAGTTACT
ACAAATTCTGTACACAAAAGAGCTTCAAACTTGCTTATGATGCTTATTTT
ATTTTTATAATCGTAGCCTAAAGATAAAAATAAATTGCTAAAAAAAGGAA
AAACAAAAAAAAAAAAAAAAAAAAA

LD22559.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-RA 1746 CG18012-RA 123..1721 1..1599 7995 100 Plus
CG18012.a 1616 CG18012.a 16..1611 1..1599 7925 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13634835..13635473 639..1 3195 100 Minus
chr3R 27901430 chr3R 13634214..13634775 1199..638 2810 100 Minus
chr3R 27901430 chr3R 13633756..13634156 1599..1199 2005 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17810479..17811117 639..1 3195 100 Minus
3R 32079331 3R 17809858..17810419 1199..638 2810 100 Minus
3R 32079331 3R 17809400..17809800 1599..1199 2005 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17551310..17551948 639..1 3195 100 Minus
3R 31820162 3R 17550689..17551250 1199..638 2810 100 Minus
3R 31820162 3R 17550231..17550631 1599..1199 2005 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:22:37 has no hits.

LD22559.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:23:50 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13633751..13634155 1200..1604 99 <- Minus
chr3R 13634214..13634774 639..1199 100 <- Minus
chr3R 13634836..13635473 1..638 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:42 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 79..1419 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:46 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 79..1419 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 79..1419 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:25 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 79..1419 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:06 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 1..1341 79..1419 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:11 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 16..1618 1..1604 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:46 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 10..1607 1..1598 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:34 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 10..1607 1..1598 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:25 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 16..1618 1..1604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:06 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
CG18012-RA 10..1607 1..1598 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:50 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17809395..17809799 1200..1604 99 <- Minus
3R 17809858..17810418 639..1199 100 <- Minus
3R 17810480..17811117 1..638 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:50 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17809395..17809799 1200..1604 99 <- Minus
3R 17809858..17810418 639..1199 100 <- Minus
3R 17810480..17811117 1..638 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:50 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17809395..17809799 1200..1604 99 <- Minus
3R 17809858..17810418 639..1199 100 <- Minus
3R 17810480..17811117 1..638 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:34 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13635117..13635521 1200..1604 99 <- Minus
arm_3R 13635580..13636140 639..1199 100 <- Minus
arm_3R 13636202..13636839 1..638 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:40 Download gff for LD22559.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17550226..17550630 1200..1604 99 <- Minus
3R 17550689..17551249 639..1199 100 <- Minus
3R 17551311..17551948 1..638 100   Minus

LD22559.hyp Sequence

Translation from 78 to 1418

> LD22559.hyp
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFL*

LD22559.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18012-PA 446 CG18012-PA 1..446 1..446 2355 100 Plus
CG18012-PC 38 CG18012-PC 1..38 1..38 199 100 Plus

LD22559.pep Sequence

Translation from 78 to 1418

> LD22559.pep
MAEVLPKKRNACVIVLGDIGRSPRMQYHAQSLLEENYHVDMIGYLETRPL
EELTQHPRCRIHELTAVPVTNLTPKLRLLFKAFWQTLSLLMALISIGRPS
FLLVQNPPGIPTLIVCYLYCAVTRTKLAIDWHNYTYTVLALGMSKGEQSP
LIRLVRRLERYFGSKAHTHFCVTRAMQEDLQQNWGIGPVKVLYDRAPAQF
HPIDLTHKHELYLKLAKDYPQFQAKDAEQSDVLEATALTQKLASGVVQYR
PQRQAVLVSSTSWTPDEDFGILLKALQAYEETAQAEPLVYPSLLCIITGK
GPQKEHYVAEIEKLQWQKVSVITPWLEIEDYPTVLASADLGVCLHWSTSG
LDLPMKVVDMFGSGLPVCAYDFKCLDELVKHGENGFVFGDHVQLAEQLRI
WFENFPKNPSILETRAGFQRKIQEFQELRWRESWRLIAAPVLEAFL*

LD22559.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18249-PA 446 GF18249-PA 1..446 1..446 2110 86.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16746-PA 446 GG16746-PA 1..446 1..446 2355 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17347-PA 450 GH17347-PA 1..450 1..446 1925 78.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Alg1-PA 446 CG18012-PA 1..446 1..446 2355 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23885-PA 450 GI23885-PA 1..450 1..446 1932 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12024-PA 447 GL12024-PA 3..447 2..446 1993 82.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26165-PA 447 GA26165-PA 3..447 2..446 1993 82.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15332-PA 446 GM15332-PA 1..446 1..446 2338 98 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20206-PA 446 GD20206-PA 1..446 1..446 2343 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23978-PA 450 GJ23978-PA 1..450 1..446 1950 78.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11839-PA 450 GK11839-PA 1..449 1..445 1899 77.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25241-PA 446 GE25241-PA 1..446 1..446 2327 97.3 Plus