Clone LD22567 Report

Search the DGRC for LD22567

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:225
Well:67
Vector:pOT2
Associated Gene/TranscriptTango11-RA
Protein status:LD22567.pep: gold
Preliminary Size:2200
Sequenced Size:1615

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG30404 2001-07-04 Blastp of sequenced clone
CG30404 2003-01-01 Sim4 clustering to Release 3
Tango11 2008-04-29 Release 5.5 accounting
Tango11 2008-08-15 Release 5.9 accounting
Tango11 2008-12-18 5.12 accounting

Clone Sequence Records

LD22567.complete Sequence

1615 bp (1615 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051672

> LD22567.complete
CACATAACAAAAGGCAGGAGAAAAATTGTAAATTATTACGGATTTCTCGG
ACATTTTTCTGTCATTTCCCGAGCAATCAAGTGAGGCCCATTGGATCAGT
TGAAAGGATTCCCCAGGACATCGCCATGGTGACCCCGCAATCGCCGACGC
CCATGTTCAATGGATTGGACGATGATCTCTACAGCGACGCCAAATATGCC
CACGAGATTAACGACAAGATGCGGGTTCCCAAAAGAATAAAGGCCACCGG
GGAGTATTCCAACGAGGATCTGCTGCTGTCCAACCAGAACGGGATGATCA
GCTCCTGGAACTATCACGACAAGATCGACATGAATGTACCGGATCGAATT
GTGGTCCTGGGCCACAATCAGCATCTGGAGACGCGATCTGCTCCGCGGGA
AATCCAGCTGGAGAACTCCATTCTGCCCAAGAACCCATCGGTCGGATTGG
TGCGCGTCCAGACGCCACCGCGCATTATCACCCTCACCGATCAACACTTT
CCCTCGGCCTCCGAGGAGAGCTCGCCCATCCGGGCCAATGGTCATCATTT
GTATGGTAATGATCTCGACGAGGACGCCGACGATGAGGAGGTCCATGCCA
CCCAATATGTGCGTGCCAATGGAGTCGCCCGTATGGGATTTCAAGGCAAT
GACACCAATTCCGTTGAATCGGACTCGCAGTTGACCACAGGCAGTGCCAG
CAAGCGCTCGCAGCTGAATCAACAGCAGCACAACAACCTGGATGCCTCAA
TGCTGGCGCACCGAGAGGGCACGCCCATGGGCGAGCTGACGCCCCACGAG
GAGATCCTGTATCTGAGACGCCAGCTGGCCAAGCTGAATCGCCGGGTGCT
GAACATCGAGATCAACAATGAACAGCGCACGCAGCGGGAGAAGATCGTCT
ACTGTCTGGGCCTGGCCTACTTCGTTCTCAAGACAATATTCTGGCTGAAT
CGCAACTAGACGCAATGTAGAGCCCACTATGATGGTTAGCGATCTGCGCT
GGGTGCCAAGACAACCACCTTGCTATGGACACCCTTTTTGGAACAGCTTC
TTTCGTTTCTTGACTTTTGTGTTTCTTTTGTGGAAAGGCTCTGAGAGAGA
CTTTGTTTTTTGTTTGCCATAATTTTGTAGACTAAGCTCCGTAATAAATA
AGCGCAACATCGTTCTGTTTTGTACACCGTGGAAAACGAAAAAAACAAAG
GCCCCCATACTTAATTTGTAAGATCTGGCACTTAAGGAGCGTGTATCTAA
ATCTAAGCTTTAATCTCTACGTGTTTCATCTGAGCAGCCCCCAACACGAA
TCCGAATCATCACAGCAGCATTGCATTGAAAAGATATTGTTTAAAAGGGT
TGTTTATATTTTAGATCTGTTAACATTTGATAATCCCAAAGTGAAAACAA
GAACTTTAATGGTATTTGTATGCGAAATCCCATACGATAAATAGTTAAAT
ATATACATAAATATAATATTATACACTAAATCCCACAGAAATCATTGCAT
TGATTTTTGCATAACTAGCGGAAACGAAGGAAATCCATTTAGAGTGTAGC
ATGAATTCATAACGATATTTAAAATAAAACGTTTAAAGTACCAAAACAAA
AAAAAAAAAAAAAAA

LD22567.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Tango11-RA 1652 Tango11-RA 31..1630 1..1600 8000 100 Plus
Tango11.a 1648 Tango11.a 31..1626 1..1600 7915 99.7 Plus
Tango11-RB 1812 Tango11-RB 268..1790 78..1600 7615 100 Plus
Tango11-RB 1812 Tango11-RB 20..96 1..77 385 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17603273..17604193 1597..678 4450 99.1 Minus
chr2R 21145070 chr2R 17605556..17606162 684..78 2930 98.8 Minus
chr2R 21145070 chr2R 17606335..17606411 77..1 385 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21716777..21717699 1600..678 4615 100 Minus
2R 25286936 2R 21719077..21719683 684..78 3020 99.8 Minus
2R 25286936 2R 21719855..21719931 77..1 385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21717976..21718898 1600..678 4615 100 Minus
2R 25260384 2R 21720276..21720882 684..78 3020 99.8 Minus
2R 25260384 2R 21721054..21721130 77..1 385 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:32:43 has no hits.

LD22567.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:33:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17603273..17604190 681..1597 95 <- Minus
chr2R 17605560..17606162 78..680 99 <- Minus
chr2R 17606335..17606411 1..77 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:43 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RB 1..834 126..959 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:37 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RB 1..834 126..959 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:52:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 1..834 126..959 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:18 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RB 1..834 126..959 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:28 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 1..834 126..959 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:58 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 31..1627 1..1597 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:37 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 31..1627 1..1597 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:52:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 33..1629 1..1597 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:18 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 31..1627 1..1597 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:28 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
Tango11-RA 33..1629 1..1597 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21716780..21717696 681..1597 100 <- Minus
2R 21719081..21719683 78..680 100 <- Minus
2R 21719855..21719931 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21716780..21717696 681..1597 100 <- Minus
2R 21719081..21719683 78..680 100 <- Minus
2R 21719855..21719931 1..77 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21716780..21717696 681..1597 100 <- Minus
2R 21719081..21719683 78..680 100 <- Minus
2R 21719855..21719931 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:52:52 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17604285..17605201 681..1597 100 <- Minus
arm_2R 17606586..17607188 78..680 100 <- Minus
arm_2R 17607360..17607436 1..77 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:01 Download gff for LD22567.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21717979..21718895 681..1597 100 <- Minus
2R 21720280..21720882 78..680 100 <- Minus
2R 21721054..21721130 1..77 100   Minus

LD22567.hyp Sequence

Translation from 2 to 958

> LD22567.hyp
HNKRQEKNCKLLRISRTFFCHFPSNQVRPIGSVERIPQDIAMVTPQSPTP
MFNGLDDDLYSDAKYAHEINDKMRVPKRIKATGEYSNEDLLLSNQNGMIS
SWNYHDKIDMNVPDRIVVLGHNQHLETRSAPREIQLENSILPKNPSVGLV
RVQTPPRIITLTDQHFPSASEESSPIRANGHHLYGNDLDEDADDEEVHAT
QYVRANGVARMGFQGNDTNSVESDSQLTTGSASKRSQLNQQQHNNLDASM
LAHREGTPMGELTPHEEILYLRRQLAKLNRRVLNIEINNEQRTQREKIVY
CLGLAYFVLKTIFWLNRN*

LD22567.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tango11-PB 277 CG30404-PB 1..277 42..318 1449 100 Plus
Tango11-PA 277 CG30404-PA 1..277 42..318 1449 100 Plus
Tango11-PC 93 CG30404-PC 2..93 227..318 474 100 Plus

LD22567.pep Sequence

Translation from 125 to 958

> LD22567.pep
MVTPQSPTPMFNGLDDDLYSDAKYAHEINDKMRVPKRIKATGEYSNEDLL
LSNQNGMISSWNYHDKIDMNVPDRIVVLGHNQHLETRSAPREIQLENSIL
PKNPSVGLVRVQTPPRIITLTDQHFPSASEESSPIRANGHHLYGNDLDED
ADDEEVHATQYVRANGVARMGFQGNDTNSVESDSQLTTGSASKRSQLNQQ
QHNNLDASMLAHREGTPMGELTPHEEILYLRRQLAKLNRRVLNIEINNEQ
RTQREKIVYCLGLAYFVLKTIFWLNRN*

LD22567.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11620-PA 277 GF11620-PA 1..277 1..277 1245 87.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20746-PA 277 GG20746-PA 1..277 1..277 1455 97.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20782-PA 284 GH20782-PA 1..284 1..277 1171 83.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tango11-PB 277 CG30404-PB 1..277 1..277 1449 100 Plus
Tango11-PA 277 CG30404-PA 1..277 1..277 1449 100 Plus
Tango11-PC 93 CG30404-PC 2..93 186..277 474 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20865-PA 284 GI20865-PA 1..284 1..277 1171 84.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17521-PA 278 GL17521-PA 1..278 1..277 1334 90.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15821-PA 280 GA15821-PA 1..280 1..277 1258 88.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15690-PA 277 GM15690-PA 1..277 1..277 1482 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25169-PA 277 GD25169-PA 1..277 1..277 1478 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20601-PA 284 GJ20601-PA 1..284 1..276 1192 84.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15656-PA 280 GK15656-PA 1..280 1..277 1186 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13678-PA 277 GE13678-PA 1..277 1..277 1467 98.6 Plus