Clone LD22634 Report

Search the DGRC for LD22634

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:226
Well:34
Vector:pOT2
Associated Gene/TranscriptCG12262-RA
Protein status:LD22634.pep: gold
Preliminary Size:1579
Sequenced Size:1462

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12262 2001-01-01 Release 2 assignment
CG12262 2001-11-29 Blastp of sequenced clone
CG12262 2003-01-01 Sim4 clustering to Release 3
CG12262 2008-04-29 Release 5.5 accounting
CG12262 2008-08-15 Release 5.9 accounting
CG12262 2008-12-18 5.12 accounting

Clone Sequence Records

LD22634.complete Sequence

1462 bp (1462 high quality bases) assembled on 2001-11-29

GenBank Submission: AY089546

> LD22634.complete
CAGCCACCGACGAGTTAGCAAGGCGACCTAGTTAAAACTCAGGAAAATAC
GAAAATAAACCCACATTCAAATGGCGTTCCTCAACAAGCTTGCTGCGCCT
GCCCTGCGCCAGTTGGTGTCCCAAAGTCGCGCCTACGCCGCCGTGTCACA
CGTTTCGCCCAATGGCACCTCTTTCGCACTCACCGAGGATCAGCTGCAGC
TGCAGGAACTGGCACGTAAGTTCACCCGTGAGGAGATCATCCCGGTGGCC
GCCCAGTACGACAAGAGCGGCGAGTACCCGTGGCCCATCATCAAGAAGGC
CTGGGAACTGGGCCTGATGAACAACCACATTCCTGCTGATATTGGTGGCC
TGGATCTCGATGTGTTCACCACCTGCTTGTCGGCCGAGGAGTTGGCCTAT
GGCTGCACTGGCATCATGACCGCCTTAGAGGCTAGTGGTCTGGGCCAAAC
TCCTGTGATCCTGTCCGGTAACAAGGAACAGAAGAAAAAGTACCTGGGCC
GCCTGCTGGAGGAGCCACTTGTCGCCGCCTATTGTGTTACAGAGCCCGGA
GCAGGATCCGATGTGTCCGGCATCAAGACACGCGCCGAGAAGAAGGGTGA
TGAGTGGGTAATCAACGGCCAGAAGATGTGGATCACCAACGGTGGTGTGG
CGAACTGGTACTTTGTGCTGGCCCGCACCAATCCGGATCCCAAGTGCCCG
CCCAGCAAGGCCTTCACCGGGTTCATTGTGGAGCGCGACAGTCCCGGACT
AACGCCCGGCCGCAAGGAGTTGAACATGGGACAGCGCGCCTCCGACACGC
GTGGCATCACCTTCGAGGATGTGCGCGTGCCCAAGGAAAATGTGCTGATT
GGCGAGGGTGCCGGTTTCAAAATTGCCATGGGCACCTTTGATAAGACGCG
TCCTCCAGTTGCTGCCGGAGCTGTGGGTTTGGCCCAGCGTTGCTTGGATG
AGGCTCTTAAATACGCGCTGGAACGCAAGACCTTTGGCGTGCCCATCGCT
TACCACCAGGCTGTGCAGTTCATGCTGGCTGATATGGCCATCGGTGTGGA
GACATCCCGTCTGGCGTGGCGTCTCTCCGCCTGGGAAATCGACCAGGGAC
GCCGCAACAGCTACTATGCCTCCATTGCCAAGTGCCATGCCGCCGATATG
GCCAACAAGATTGCCTCCGATGCCGTCCAGATCTTTGGAGGCAACGGCTT
CAACAGCGAGTATCCCGTGGAGAAGCTGATGCGTGATGCCAAGATCTACC
AAATCTACGAAGGTACTTCTCAGATCCAGCGCCTCATCATTTCCCGAAAC
ATGTACGAGGCTGCTAAGGGTCAAGCCTAAGTCAGTTTTAACTAGGATTC
CTCATCTCCATTCACCTCATCAGTTGTCATGCTCATTGTAGACACATTCA
CAAATCCGATTAATAAAGTACAATAAGTAAATAATTACAAGAAAAAAAAA
AAAAAAAAAAAA

LD22634.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-RA 1745 CG12262-RA 184..1628 1..1445 7225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:06:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7712607..7713602 446..1441 4905 99.5 Plus
chr3L 24539361 chr3L 7712188..7712546 87..445 1795 100 Plus
chr3L 24539361 chr3L 7711500..7711587 1..88 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7720477..7721476 446..1445 5000 100 Plus
3L 28110227 3L 7720058..7720416 87..445 1795 100 Plus
3L 28110227 3L 7719370..7719457 1..88 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7713577..7714576 446..1445 5000 100 Plus
3L 28103327 3L 7713158..7713516 87..445 1795 100 Plus
3L 28103327 3L 7712470..7712557 1..88 440 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:06:26 has no hits.

LD22634.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:07:27 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7712190..7712546 89..445 100 -> Plus
chr3L 7711500..7711587 1..88 100 -> Plus
chr3L 7712607..7713602 446..1441 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:52 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 71..1330 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:15 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 71..1330 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:34:48 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 71..1330 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:33 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 71..1330 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:57:52 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 1..1260 71..1330 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:27 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 10..1450 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:15 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 10..1450 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:34:48 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 21..1461 1..1441 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:33 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 10..1450 1..1441 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:57:52 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
CG12262-RA 21..1461 1..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:27 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7719370..7719457 1..88 100 -> Plus
3L 7720060..7720416 89..445 100 -> Plus
3L 7720477..7721472 446..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:27 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7719370..7719457 1..88 100 -> Plus
3L 7720060..7720416 89..445 100 -> Plus
3L 7720477..7721472 446..1441 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:07:27 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7719370..7719457 1..88 100 -> Plus
3L 7720060..7720416 89..445 100 -> Plus
3L 7720477..7721472 446..1441 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:34:48 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7712470..7712557 1..88 100 -> Plus
arm_3L 7713160..7713516 89..445 100 -> Plus
arm_3L 7713577..7714572 446..1441 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:01 Download gff for LD22634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7713160..7713516 89..445 100 -> Plus
3L 7713577..7714572 446..1441 100   Plus
3L 7712470..7712557 1..88 100 -> Plus

LD22634.pep Sequence

Translation from 70 to 1329

> LD22634.pep
MAFLNKLAAPALRQLVSQSRAYAAVSHVSPNGTSFALTEDQLQLQELARK
FTREEIIPVAAQYDKSGEYPWPIIKKAWELGLMNNHIPADIGGLDLDVFT
TCLSAEELAYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPL
VAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVL
ARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFED
VRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYAL
ERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYA
SIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTS
QIQRLIISRNMYEAAKGQA*

LD22634.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10656-PA 420 GF10656-PA 1..417 1..417 2167 96.2 Plus
Dana\GF17623-PA 405 GF17623-PA 26..396 36..408 620 37.9 Plus
Dana\GF17739-PA 418 GF17739-PA 39..408 36..408 610 36.6 Plus
Dana\GF10801-PA 415 GF10801-PA 2..407 4..409 599 36.3 Plus
Dana\GF10158-PA 419 GF10158-PA 4..419 6..416 593 35 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14445-PA 419 GG14445-PA 1..419 1..419 2219 98.8 Plus
Dere\Arc42-PA 405 GG23560-PA 26..396 36..408 648 39.8 Plus
Dere\GG17152-PA 415 GG17152-PA 36..405 36..408 609 38 Plus
Dere\GG13447-PA 414 GG13447-PA 37..406 37..409 598 37.2 Plus
Dere\GG15072-PA 420 GG15072-PA 26..420 24..416 587 35.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14704-PA 419 GH14704-PA 1..418 1..419 2142 94.7 Plus
Dgri\GH16400-PA 406 GH16400-PA 10..397 14..408 650 38.5 Plus
Dgri\GH16965-PA 414 GH16965-PA 11..414 6..417 608 35.6 Plus
Dgri\GH22516-PA 424 GH22516-PA 4..424 6..416 606 35.5 Plus
Dgri\GH15455-PA 336 GH15455-PA 1..327 80..408 528 36.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-PA 419 CG12262-PA 1..419 1..419 2173 100 Plus
Arc42-PA 405 CG4703-PA 26..396 36..408 626 39.4 Plus
CG4860-PA 415 CG4860-PA 36..405 36..408 605 37.5 Plus
CG3902-PA 414 CG3902-PA 11..406 6..409 595 36.5 Plus
CG6638-PA 420 CG6638-PA 27..420 25..416 577 35.9 Plus
CG7461-PC 627 CG7461-PC 92..446 60..408 515 35.6 Plus
CG7461-PB 627 CG7461-PB 92..446 60..408 515 35.6 Plus
CG9547-PA 419 CG9547-PA 12..409 10..409 377 29.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12250-PA 420 GI12250-PA 1..418 1..419 2118 94 Plus
Dmoj\GI22432-PA 406 GI22432-PA 26..397 36..408 647 39.4 Plus
Dmoj\GI11829-PA 414 GI11829-PA 2..406 4..409 604 36.3 Plus
Dmoj\GI22465-PA 407 GI22465-PA 28..404 36..414 600 36.2 Plus
Dmoj\GI12421-PA 421 GI12421-PA 21..421 8..416 570 34.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25095-PA 419 GL25095-PA 1..419 1..419 2178 96.4 Plus
Dper\GL12205-PA 405 GL12205-PA 26..396 36..408 646 38.6 Plus
Dper\GL21568-PA 413 GL21568-PA 34..403 36..408 632 38.8 Plus
Dper\GL25250-PA 415 GL25250-PA 2..407 4..409 603 35.5 Plus
Dper\GL10298-PA 420 GL10298-PA 3..420 1..416 566 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11516-PA 419 GA11516-PA 1..419 1..419 2178 96.4 Plus
Dpse\Arc42-PA 405 GA18369-PA 26..396 36..408 646 38.6 Plus
Dpse\GA18485-PA 411 GA18485-PA 32..401 36..408 634 39 Plus
Dpse\GA17761-PA 415 GA17761-PA 2..407 4..409 603 35.5 Plus
Dpse\GA19744-PA 420 GA19744-PA 3..420 1..416 566 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24997-PA 419 GM24997-PA 1..419 1..419 2239 99.8 Plus
Dsec\GM26869-PA 405 GM26869-PA 26..396 36..408 653 39.8 Plus
Dsec\GM26034-PA 420 GM26034-PA 36..410 36..408 606 38 Plus
Dsec\GM24928-PA 420 GM24928-PA 27..420 25..416 591 35.9 Plus
Dsec\GM21947-PA 627 GM21947-PA 92..446 60..408 531 36.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14030-PA 439 GD14030-PA 1..412 1..412 2205 99.8 Plus
Dsim\GD19319-PA 405 GD19319-PA 26..396 36..408 648 39.5 Plus
Dsim\GD20592-PA 415 GD20592-PA 36..405 36..408 612 38 Plus
Dsim\GD12977-PA 420 GD12977-PA 27..420 25..416 592 36.2 Plus
Dsim\GD12323-PA 420 GD12323-PA 37..412 37..409 585 37.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11482-PA 420 GJ11482-PA 1..418 1..419 2132 94.7 Plus
Dvir\GJ19560-PA 420 GJ19560-PA 1..418 1..419 2132 94.7 Plus
Dvir\GJ10995-PA 406 GJ10995-PA 17..397 27..408 633 38.2 Plus
Dvir\GJ10063-PA 408 GJ10063-PA 29..405 36..414 607 36.2 Plus
Dvir\GJ13529-PA 414 GJ13529-PA 37..406 37..409 594 36.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23895-PA 420 GK23895-PA 1..418 1..419 2133 94.7 Plus
Dwil\Arc42-PA 405 GK22361-PA 26..396 36..408 657 39.5 Plus
Dwil\GK11564-PA 384 GK11564-PA 4..375 36..408 594 37.7 Plus
Dwil\GK20558-PA 423 GK20558-PA 31..423 25..416 593 37 Plus
Dwil\GK20439-PA 417 GK20439-PA 11..409 6..409 587 36 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21636-PA 419 GE21636-PA 1..419 1..419 2218 98.8 Plus
Dyak\GE25631-PA 405 GE25631-PA 26..396 36..408 654 39.8 Plus
Dyak\GE24541-PA 415 GE24541-PA 36..405 36..408 610 38 Plus
Dyak\GE22549-PA 414 GE22549-PA 37..406 37..409 595 37.2 Plus
Dyak\GE22545-PA 414 GE22545-PA 37..406 37..409 595 37.2 Plus

LD22634.hyp Sequence

Translation from 70 to 1329

> LD22634.hyp
MAFLNKLAAPALRQLVSQSRAYAAVSHVSPNGTSFALTEDQLQLQELARK
FTREEIIPVAAQYDKSGEYPWPIIKKAWELGLMNNHIPADIGGLDLDVFT
TCLSAEELAYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPL
VAAYCVTEPGAGSDVSGIKTRAEKKGDEWVINGQKMWITNGGVANWYFVL
ARTNPDPKCPPSKAFTGFIVERDSPGLTPGRKELNMGQRASDTRGITFED
VRVPKENVLIGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRCLDEALKYAL
ERKTFGVPIAYHQAVQFMLADMAIGVETSRLAWRLSAWEIDQGRRNSYYA
SIAKCHAADMANKIASDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTS
QIQRLIISRNMYEAAKGQA*

LD22634.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12262-PA 419 CG12262-PA 1..419 1..419 2173 100 Plus
Arc42-PA 405 CG4703-PA 26..396 36..408 626 39.4 Plus
CG4860-PA 415 CG4860-PA 36..405 36..408 605 37.5 Plus
CG3902-PA 414 CG3902-PA 11..406 6..409 595 36.5 Plus
CG6638-PA 420 CG6638-PA 27..420 25..416 577 35.9 Plus