BDGP Sequence Production Resources |
Search the DGRC for LD22649
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 226 |
Well: | 49 |
Vector: | pOT2 |
Associated Gene/Transcript | CG12207-RB |
Protein status: | LD22649.pep: gold |
Preliminary Size: | 2092 |
Sequenced Size: | 2033 |
Gene | Date | Evidence |
---|---|---|
CG12207 | 2001-01-01 | Release 2 assignment |
CG12207 | 2001-07-04 | Blastp of sequenced clone |
CG12207 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12207 | 2008-04-29 | Release 5.5 accounting |
CG12207 | 2008-08-15 | Release 5.9 accounting |
CG12207 | 2008-12-18 | 5.12 accounting |
2033 bp (2033 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051674
> LD22649.complete CTGCTTGGAGTTGGTCGCTCGCCTGCTGCGCTCTTAGTTGTTTTGGCTAA GTTCACTTAGTTAGTGCCTTCGTTTAGCGGCGAAAAAGCTGGAAAAAAAC GTATAAAATATATCGCGTTGTCGTCGCCGTCGTCGTCGTTGCCGCTTTTG TATCTGTGTTTGCGATCCAGTGTGAAAAGCAGAAAAACAGACAAGCCCAC GGAAATGGATTACATTGTGAAGGCCTACAAGGATTGGAAACTGCATTCGC AGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAAC GAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAG CACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCG TCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACG ACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTT CCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATC CCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACG CCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGC CAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCA GCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACA AGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACA GCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGC TGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCAC GGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAAT GACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGA TAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGAC CTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGA CGTTTTCCCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGACCAACA ACAACGACCGTCCGTCGCAGTATCAGCGCCACAGCTCGACGGGCAGCGGG AACTCCTCGGATACGGCGCACCTGCTGAACACGACGCAGACGCGACGAGT CCAGAATTCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTTTGAGT TGTAGCGTCCGTCTGCGGGACGCAATCTAGCCTAATTACGCAGAGAGTTA ATTTTACAATTCGTTTTTAATTGCCGCGCATTGGGGAGATGACTTTGGTC AGCATGTTACATCACACGGAAATGCCGCACTCTAAATGTAATATAAATAA TGATATCTATCGACAAATATGCGCGATACCTTACCTATACGATAAAACAT TAATGTAACTGAGCTAAAACCTAAACTAAACTATATACCTAAACTAAGCG CTGCGCTATGTAAACCTGTAGTACGATGACAAGGCAGTTCTGTAAACCCA TTTTGATCTTGTGTCAGCCCTGTATAATTGCCGCCAATTTGCTTGCAAGA TCCGATCTGAACCGCATCGAACAGATACGGAAGCCTTCTGTCCTCCTGTC CGCCCTCCTGCCCCCCATTATGTTTACTTTTTGTATGACTCTAGCTTTAA TCACACTGTGTATAATTTAGTTATGAGAATTATTAATGTTAATTGTATAT AGTCGCCAGAAAACACAACAATCCAACTGGACTGCTCTGACCGCTAAAAC ACGAAATTGGCCAACTGTTGACGTGTAATTTTAATTTATTTTTTAGCTTT CCAAAGTATTAAACCCGAAACGTTCTATATAAAACCGTAACCTCAATTGT TAAACAAGCATCCACCACAAAACAATATATACACCAATATATATTATGTA TATCCCAGAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 10126053..10127011 | 1050..2008 | 4795 | 100 | Plus |
chr3R | 27901430 | chr3R | 10125244..10125843 | 450..1049 | 2970 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 10123612..10123813 | 249..450 | 995 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 10114112..10114273 | 1..162 | 810 | 100 | Plus |
chr3R | 27901430 | chr3R | 10115555..10115645 | 162..252 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 14301228..14302189 | 1050..2011 | 4810 | 100 | Plus |
3R | 32079331 | 3R | 14300419..14301018 | 450..1049 | 3000 | 100 | Plus |
3R | 32079331 | 3R | 14298786..14298987 | 249..450 | 1010 | 100 | Plus |
3R | 32079331 | 3R | 14289289..14289450 | 1..162 | 810 | 100 | Plus |
3R | 32079331 | 3R | 14290730..14290820 | 162..252 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 14042059..14043020 | 1050..2011 | 4810 | 100 | Plus |
3R | 31820162 | 3R | 14041250..14041849 | 450..1049 | 3000 | 100 | Plus |
3R | 31820162 | 3R | 14039617..14039818 | 249..450 | 1010 | 100 | Plus |
3R | 31820162 | 3R | 14030120..14030281 | 1..162 | 810 | 100 | Plus |
3R | 31820162 | 3R | 14031561..14031651 | 162..252 | 455 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6899 | 661..826 | 319 | 68.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6694..6925 | 595..819 | 306 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6893 | 663..826 | 275 | 66.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2526 | 627..826 | 259 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2478 | 668..829 | 228 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6863 | 688..817 | 220 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6956 | 641..808 | 220 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2449 | 683..838 | 216 | 63.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1157 | 730..829 | 165 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6824 | 711..826 | 161 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6414..6563 | 676..826 | 149 | 58.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 849..1005 | 660..826 | 146 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2450..2661 | 627..829 | 138 | 56.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2394 | 731..826 | 130 | 64.6 | Plus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 1605..1647 | 1798..1756 | 125 | 76.7 | Minus |
gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 9487..9529 | 1798..1756 | 125 | 76.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6779 | 786..826 | 120 | 79.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6800 | 786..826 | 120 | 79.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1169 | 712..829 | 117 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2842 | 740..833 | 115 | 59.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 10115555..10115645 | 162..252 | 100 | -> | Plus |
chr3R | 10123616..10123813 | 253..450 | 99 | -> | Plus |
chr3R | 10125245..10125481 | 451..687 | 99 | == | Plus |
chr3R | 10125543..10125843 | 749..1049 | 99 | -> | Plus |
chr3R | 10126053..10127011 | 1050..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RC | 1..1101 | 205..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RC | 1..1101 | 205..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 1..1101 | 205..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RC | 1..1101 | 205..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RC | 1..1101 | 205..1305 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 218..2225 | 1..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 218..2225 | 1..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 218..2225 | 1..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 218..2225 | 1..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12207-RB | 219..2226 | 1..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14289289..14289449 | 1..161 | 100 | -> | Plus |
3R | 14290730..14290820 | 162..252 | 100 | -> | Plus |
3R | 14298790..14298987 | 253..450 | 100 | -> | Plus |
3R | 14300420..14301018 | 451..1049 | 100 | -> | Plus |
3R | 14301228..14302186 | 1050..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14289289..14289449 | 1..161 | 100 | -> | Plus |
3R | 14290730..14290820 | 162..252 | 100 | -> | Plus |
3R | 14298790..14298987 | 253..450 | 100 | -> | Plus |
3R | 14300420..14301018 | 451..1049 | 100 | -> | Plus |
3R | 14301228..14302186 | 1050..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14289289..14289449 | 1..161 | 100 | -> | Plus |
3R | 14290730..14290820 | 162..252 | 100 | -> | Plus |
3R | 14298790..14298987 | 253..450 | 100 | -> | Plus |
3R | 14300420..14301018 | 451..1049 | 100 | -> | Plus |
3R | 14301228..14302186 | 1050..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 10115011..10115171 | 1..161 | 100 | -> | Plus |
arm_3R | 10116452..10116542 | 162..252 | 100 | -> | Plus |
arm_3R | 10124512..10124709 | 253..450 | 100 | -> | Plus |
arm_3R | 10126142..10126740 | 451..1049 | 100 | -> | Plus |
arm_3R | 10126950..10127908 | 1050..2008 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 14041251..14041849 | 451..1049 | 100 | -> | Plus |
3R | 14042059..14043017 | 1050..2008 | 100 | Plus | |
3R | 14030120..14030280 | 1..161 | 100 | -> | Plus |
3R | 14031561..14031651 | 162..252 | 100 | -> | Plus |
3R | 14039621..14039818 | 253..450 | 100 | -> | Plus |
Translation from 204 to 1304
> LD22649.pep MDYIVKAYKDWKLHSQFQEIVPDMDDSEFMFNEKQSIRDSGRTLKRYGST CCNSLRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFL RQFLLVPVEKNSPYYPQVPGDSIAAFDAVLATPPGTPDANGQREAHNNAN NLSQSNKSFMKSNDISSSSSSSSSGSSSSCNTSGTGPISGGSRSGGNQQQ QQQQPPQRPYSIAGELLVVQAGDEDPSMMHGHGGCSGKQSKSLDSVAAMT PEEENRKCMNDFLNKIDNTISESRKYVERSKDLVSSQSDADICISATADV FPQRRHPLNNSYKTNNNDRPSQYQRHSSTGSGNSSDTAHLLNTTQTRRVQ NSLKRLEKQQDDFFEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16161-PA | 362 | GF16161-PA | 1..362 | 1..366 | 1530 | 82.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16845-PA | 366 | GG16845-PA | 1..366 | 1..366 | 1933 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18663-PA | 365 | GH18663-PA | 1..365 | 1..366 | 1286 | 74.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
red-PG | 366 | CG12207-PG | 1..366 | 1..366 | 1904 | 100 | Plus |
red-PF | 366 | CG12207-PF | 1..366 | 1..366 | 1904 | 100 | Plus |
red-PC | 366 | CG12207-PC | 1..366 | 1..366 | 1904 | 100 | Plus |
red-PB | 366 | CG12207-PB | 1..366 | 1..366 | 1904 | 100 | Plus |
red-PE | 343 | CG12207-PE | 1..343 | 24..366 | 1777 | 100 | Plus |
red-PD | 343 | CG12207-PD | 1..343 | 24..366 | 1777 | 100 | Plus |
red-PA | 343 | CG12207-PA | 1..343 | 24..366 | 1777 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10811-PA | 355 | GI10811-PA | 1..355 | 1..366 | 1263 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23268-PA | 360 | GL23268-PA | 1..360 | 1..366 | 1487 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11477-PA | 360 | GA11477-PA | 1..360 | 1..366 | 1488 | 83.1 | Plus |
Dpse\GA23177-PA | 164 | GA23177-PA | 27..163 | 219..357 | 639 | 89.2 | Plus |
Dpse\GA23176-PA | 141 | GA23176-PA | 1..129 | 24..152 | 631 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24156-PA | 366 | GM24156-PA | 1..366 | 1..366 | 1938 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18952-PA | 856 | GD18952-PA | 1..349 | 1..349 | 1893 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14410-PA | 343 | GJ14410-PA | 1..343 | 1..366 | 1271 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11342-PA | 367 | GK11342-PA | 1..367 | 1..366 | 1305 | 76.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24226-PA | 370 | GE24226-PA | 1..370 | 1..366 | 1931 | 98.1 | Plus |
Translation from 204 to 1304
> LD22649.hyp MDYIVKAYKDWKLHSQFQEIVPDMDDSEFMFNEKQSIRDSGRTLKRYGST CCNSLRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFL RQFLLVPVEKNSPYYPQVPGDSIAAFDAVLATPPGTPDANGQREAHNNAN NLSQSNKSFMKSNDISSSSSSSSSGSSSSCNTSGTGPISGGSRSGGNQQQ QQQQPPQRPYSIAGELLVVQAGDEDPSMMHGHGGCSGKQSKSLDSVAAMT PEEENRKCMNDFLNKIDNTISESRKYVERSKDLVSSQSDADICISATADV FPQRRHPLNNSYKTNNNDRPSQYQRHSSTGSGNSSDTAHLLNTTQTRRVQ NSLKRLEKQQDDFFEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12207-PG | 366 | CG12207-PG | 1..366 | 1..366 | 1904 | 100 | Plus |
CG12207-PF | 366 | CG12207-PF | 1..366 | 1..366 | 1904 | 100 | Plus |
CG12207-PC | 366 | CG12207-PC | 1..366 | 1..366 | 1904 | 100 | Plus |
CG12207-PB | 366 | CG12207-PB | 1..366 | 1..366 | 1904 | 100 | Plus |
CG12207-PE | 343 | CG12207-PE | 1..343 | 24..366 | 1777 | 100 | Plus |