Clone LD22649 Report

Search the DGRC for LD22649

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:226
Well:49
Vector:pOT2
Associated Gene/TranscriptCG12207-RB
Protein status:LD22649.pep: gold
Preliminary Size:2092
Sequenced Size:2033

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12207 2001-01-01 Release 2 assignment
CG12207 2001-07-04 Blastp of sequenced clone
CG12207 2003-01-01 Sim4 clustering to Release 3
CG12207 2008-04-29 Release 5.5 accounting
CG12207 2008-08-15 Release 5.9 accounting
CG12207 2008-12-18 5.12 accounting

Clone Sequence Records

LD22649.complete Sequence

2033 bp (2033 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051674

> LD22649.complete
CTGCTTGGAGTTGGTCGCTCGCCTGCTGCGCTCTTAGTTGTTTTGGCTAA
GTTCACTTAGTTAGTGCCTTCGTTTAGCGGCGAAAAAGCTGGAAAAAAAC
GTATAAAATATATCGCGTTGTCGTCGCCGTCGTCGTCGTTGCCGCTTTTG
TATCTGTGTTTGCGATCCAGTGTGAAAAGCAGAAAAACAGACAAGCCCAC
GGAAATGGATTACATTGTGAAGGCCTACAAGGATTGGAAACTGCATTCGC
AGTTTCAAGAGATCGTCCCCGACATGGATGACTCGGAATTCATGTTCAAC
GAGAAGCAATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAG
CACCTGCTGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCG
TCGAGAAGACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACG
ACGGAGCAAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTT
CCTGCGTCAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATC
CCCAGGTGCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACG
CCACCGGGCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGC
CAATAATCTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCA
GCAGCAGCAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACA
AGTGGCACCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACA
GCAGCAGCAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGC
TGCTGGTGGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCAC
GGTGGTTGCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAAT
GACGCCCGAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGA
TAGACAACACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGAC
CTGGTCAGCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGA
CGTTTTCCCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGACCAACA
ACAACGACCGTCCGTCGCAGTATCAGCGCCACAGCTCGACGGGCAGCGGG
AACTCCTCGGATACGGCGCACCTGCTGAACACGACGCAGACGCGACGAGT
CCAGAATTCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTTTGAGT
TGTAGCGTCCGTCTGCGGGACGCAATCTAGCCTAATTACGCAGAGAGTTA
ATTTTACAATTCGTTTTTAATTGCCGCGCATTGGGGAGATGACTTTGGTC
AGCATGTTACATCACACGGAAATGCCGCACTCTAAATGTAATATAAATAA
TGATATCTATCGACAAATATGCGCGATACCTTACCTATACGATAAAACAT
TAATGTAACTGAGCTAAAACCTAAACTAAACTATATACCTAAACTAAGCG
CTGCGCTATGTAAACCTGTAGTACGATGACAAGGCAGTTCTGTAAACCCA
TTTTGATCTTGTGTCAGCCCTGTATAATTGCCGCCAATTTGCTTGCAAGA
TCCGATCTGAACCGCATCGAACAGATACGGAAGCCTTCTGTCCTCCTGTC
CGCCCTCCTGCCCCCCATTATGTTTACTTTTTGTATGACTCTAGCTTTAA
TCACACTGTGTATAATTTAGTTATGAGAATTATTAATGTTAATTGTATAT
AGTCGCCAGAAAACACAACAATCCAACTGGACTGCTCTGACCGCTAAAAC
ACGAAATTGGCCAACTGTTGACGTGTAATTTTAATTTATTTTTTAGCTTT
CCAAAGTATTAAACCCGAAACGTTCTATATAAAACCGTAACCTCAATTGT
TAAACAAGCATCCACCACAAAACAATATATACACCAATATATATTATGTA
TATCCCAGAAAAAAAAAAAAAAAAAAAAAAAAA

LD22649.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RB 2379 CG12207-RB 230..2240 1..2011 10055 100 Plus
CG12207.b 2003 CG12207.b 70..1919 162..2011 9250 100 Plus
CG12207.a 2003 CG12207.a 70..1919 162..2011 9250 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10126053..10127011 1050..2008 4795 100 Plus
chr3R 27901430 chr3R 10125244..10125843 450..1049 2970 99.7 Plus
chr3R 27901430 chr3R 10123612..10123813 249..450 995 99.5 Plus
chr3R 27901430 chr3R 10114112..10114273 1..162 810 100 Plus
chr3R 27901430 chr3R 10115555..10115645 162..252 455 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:34:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14301228..14302189 1050..2011 4810 100 Plus
3R 32079331 3R 14300419..14301018 450..1049 3000 100 Plus
3R 32079331 3R 14298786..14298987 249..450 1010 100 Plus
3R 32079331 3R 14289289..14289450 1..162 810 100 Plus
3R 32079331 3R 14290730..14290820 162..252 455 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14042059..14043020 1050..2011 4810 100 Plus
3R 31820162 3R 14041250..14041849 450..1049 3000 100 Plus
3R 31820162 3R 14039617..14039818 249..450 1010 100 Plus
3R 31820162 3R 14030120..14030281 1..162 810 100 Plus
3R 31820162 3R 14031561..14031651 162..252 455 100 Plus
Blast to na_te.dros performed 2019-03-15 13:35:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 661..826 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6694..6925 595..819 306 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 663..826 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2526 627..826 259 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2478 668..829 228 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6863 688..817 220 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 641..808 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 683..838 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 730..829 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 711..826 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 676..826 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 660..826 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 627..829 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 731..826 130 64.6 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1605..1647 1798..1756 125 76.7 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9487..9529 1798..1756 125 76.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 786..826 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 786..826 120 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1062..1169 712..829 117 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2747..2842 740..833 115 59.4 Plus

LD22649.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:36:21 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10115555..10115645 162..252 100 -> Plus
chr3R 10123616..10123813 253..450 99 -> Plus
chr3R 10125245..10125481 451..687 99 == Plus
chr3R 10125543..10125843 749..1049 99 -> Plus
chr3R 10126053..10127011 1050..2008 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:13:24 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 1..1101 205..1305 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:59:33 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 1..1101 205..1305 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:05:14 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 1..1101 205..1305 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:43:20 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 1..1101 205..1305 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:34:03 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 1..1101 205..1305 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:13:23 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 218..2225 1..2008 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:59:33 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 218..2225 1..2008 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:05:14 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 218..2225 1..2008 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:43:20 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 218..2225 1..2008 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:34:03 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RB 219..2226 1..2008 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:21 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14289289..14289449 1..161 100 -> Plus
3R 14290730..14290820 162..252 100 -> Plus
3R 14298790..14298987 253..450 100 -> Plus
3R 14300420..14301018 451..1049 100 -> Plus
3R 14301228..14302186 1050..2008 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:21 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14289289..14289449 1..161 100 -> Plus
3R 14290730..14290820 162..252 100 -> Plus
3R 14298790..14298987 253..450 100 -> Plus
3R 14300420..14301018 451..1049 100 -> Plus
3R 14301228..14302186 1050..2008 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:36:21 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14289289..14289449 1..161 100 -> Plus
3R 14290730..14290820 162..252 100 -> Plus
3R 14298790..14298987 253..450 100 -> Plus
3R 14300420..14301018 451..1049 100 -> Plus
3R 14301228..14302186 1050..2008 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:05:14 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10115011..10115171 1..161 100 -> Plus
arm_3R 10116452..10116542 162..252 100 -> Plus
arm_3R 10124512..10124709 253..450 100 -> Plus
arm_3R 10126142..10126740 451..1049 100 -> Plus
arm_3R 10126950..10127908 1050..2008 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:26:16 Download gff for LD22649.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14041251..14041849 451..1049 100 -> Plus
3R 14042059..14043017 1050..2008 100   Plus
3R 14030120..14030280 1..161 100 -> Plus
3R 14031561..14031651 162..252 100 -> Plus
3R 14039621..14039818 253..450 100 -> Plus

LD22649.pep Sequence

Translation from 204 to 1304

> LD22649.pep
MDYIVKAYKDWKLHSQFQEIVPDMDDSEFMFNEKQSIRDSGRTLKRYGST
CCNSLRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFL
RQFLLVPVEKNSPYYPQVPGDSIAAFDAVLATPPGTPDANGQREAHNNAN
NLSQSNKSFMKSNDISSSSSSSSSGSSSSCNTSGTGPISGGSRSGGNQQQ
QQQQPPQRPYSIAGELLVVQAGDEDPSMMHGHGGCSGKQSKSLDSVAAMT
PEEENRKCMNDFLNKIDNTISESRKYVERSKDLVSSQSDADICISATADV
FPQRRHPLNNSYKTNNNDRPSQYQRHSSTGSGNSSDTAHLLNTTQTRRVQ
NSLKRLEKQQDDFFEL*

LD22649.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16161-PA 362 GF16161-PA 1..362 1..366 1530 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16845-PA 366 GG16845-PA 1..366 1..366 1933 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18663-PA 365 GH18663-PA 1..365 1..366 1286 74.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
red-PG 366 CG12207-PG 1..366 1..366 1904 100 Plus
red-PF 366 CG12207-PF 1..366 1..366 1904 100 Plus
red-PC 366 CG12207-PC 1..366 1..366 1904 100 Plus
red-PB 366 CG12207-PB 1..366 1..366 1904 100 Plus
red-PE 343 CG12207-PE 1..343 24..366 1777 100 Plus
red-PD 343 CG12207-PD 1..343 24..366 1777 100 Plus
red-PA 343 CG12207-PA 1..343 24..366 1777 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10811-PA 355 GI10811-PA 1..355 1..366 1263 73.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23268-PA 360 GL23268-PA 1..360 1..366 1487 83.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11477-PA 360 GA11477-PA 1..360 1..366 1488 83.1 Plus
Dpse\GA23177-PA 164 GA23177-PA 27..163 219..357 639 89.2 Plus
Dpse\GA23176-PA 141 GA23176-PA 1..129 24..152 631 92.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24156-PA 366 GM24156-PA 1..366 1..366 1938 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18952-PA 856 GD18952-PA 1..349 1..349 1893 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14410-PA 343 GJ14410-PA 1..343 1..366 1271 73 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11342-PA 367 GK11342-PA 1..367 1..366 1305 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24226-PA 370 GE24226-PA 1..370 1..366 1931 98.1 Plus

LD22649.hyp Sequence

Translation from 204 to 1304

> LD22649.hyp
MDYIVKAYKDWKLHSQFQEIVPDMDDSEFMFNEKQSIRDSGRTLKRYGST
CCNSLRNNETLIRHIVEKTDTLQGIALKYGCTTEQIRRANRLFASDSLFL
RQFLLVPVEKNSPYYPQVPGDSIAAFDAVLATPPGTPDANGQREAHNNAN
NLSQSNKSFMKSNDISSSSSSSSSGSSSSCNTSGTGPISGGSRSGGNQQQ
QQQQPPQRPYSIAGELLVVQAGDEDPSMMHGHGGCSGKQSKSLDSVAAMT
PEEENRKCMNDFLNKIDNTISESRKYVERSKDLVSSQSDADICISATADV
FPQRRHPLNNSYKTNNNDRPSQYQRHSSTGSGNSSDTAHLLNTTQTRRVQ
NSLKRLEKQQDDFFEL*

LD22649.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:58:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PG 366 CG12207-PG 1..366 1..366 1904 100 Plus
CG12207-PF 366 CG12207-PF 1..366 1..366 1904 100 Plus
CG12207-PC 366 CG12207-PC 1..366 1..366 1904 100 Plus
CG12207-PB 366 CG12207-PB 1..366 1..366 1904 100 Plus
CG12207-PE 343 CG12207-PE 1..343 24..366 1777 100 Plus