Clone LD22651 Report

Search the DGRC for LD22651

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:226
Well:51
Vector:pOT2
Associated Gene/TranscriptCG7154-RA
Protein status:LD22651.pep: gold
Preliminary Size:2839
Sequenced Size:2833

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7154 2001-01-01 Release 2 assignment
CG7154 2001-11-29 Blastp of sequenced clone
CG7154 2003-01-01 Sim4 clustering to Release 3
CG7154 2008-04-29 Release 5.5 accounting
CG7154 2008-08-15 Release 5.9 accounting
CG7154 2008-12-18 5.12 accounting

Clone Sequence Records

LD22651.complete Sequence

2833 bp (2833 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069504

> LD22651.complete
TCACACTGCTCATGGCGTCTGTTTTTCGCCAGCGGATTTTTGTTTTTAAT
TATTTTGCTTACCATTTTCACCGATTTGCCTAATTGTTCGACAACTGGGA
GCCTAAGATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGTCGGAGCGAC
GCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCTCAGCTGCAA
CGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCACGCCGGAGTA
CAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAGCAGCCGAGG
CCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAGGGTCATCGC
GAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGATCGCGAGAA
GAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAGATAGACATC
GGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGACGATGCCGCT
TGCAGTGGATTCGCCCCATCGTCTGTCGCTCCACCGGCCGCCGATCCCGA
TTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAATCACAACCGC
TGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGATAACTCGCCA
TCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCTGGATGATAT
TCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTTCCTCCCTGG
GTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTTTTAATACCT
TCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCTTACACCGAA
GGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGTCGGGTAGAG
AGCCACGGAGCTGTGTGCTCAAGCTAAAGCAGCAGAAATCGCCGTTAAAC
AAACTTCTGGAGCACCTGTTGCGCTTCCTGGAGAAGCGGGATCCCCATCA
GTTCTTCGCTTGGCCGGTGACCGATGACATGGCGCCCGGTTACTCTTCAA
TAATCAGCAGACCCATGGACTTCTCCACTATGCGACAGAAAATTGATGAT
CACGAGTATACCGCTTTAACCGAGTTCACTGATGACTTTAAGCTGATGTG
CGAAAATGCCATCAAGTACAACCACGTGGATACGGTTTATAACAAGGCAG
CTAAACGTCTACTCCAAGTTGGAATGAAACATCTGCAACCTGAGAACCTC
ATGAGAAGCCTGAAACCACTATCTGGTTATATGAGGGAGCTTACAGCCAG
AGAACTTGGCTTTGAGTTAAGTTCGAACGATATGTCAAGGGAAAATAACG
ATTCGGCGGATGAAGGAGCTTCAACGGGAGCGGAAGAGCCACGCACTCCC
GCTCAGCTGGAGGAGGAGGAGCGTAAGCGAACACTTCGTTTGGAGAATGC
ACCCAAAACACATTTCGAGCCTTATGTAGACGATTTAACGGGCGAAGAGA
TCCTGGCGCAAGTGCAAAATGCTGCGCAACAGGCCAAACAAAGAGTGAAC
GCCAAGAAAAATGCCCACAAGATGGGTTTCCTGCGTCAAATGAAGGATGG
CACCACCACCCTGAATCTGGTGATCAAAGAGGAAAACGAGGGTCCTGAAA
GGGTAGTAACAATTGGTGATCTAGTTGGCAAACTGCAAAAGGGAAGCGCA
CAGCTACAGACGCGACAGGTTGACAAAAGGAATGCCGTGCGGACAGTGAA
ATCCTTAAACTACGGAGCATTTGCCAGCTTTGCGCCCACCTTTGATTCGC
GCTTTTCCACGCTGAGTGCCGAAGAAACGCAATTGGTTTTGCGTACGTAT
GGAGATGCCTCCAGTGCGGAATATGCGGAGAGCATCTTACAATTCACCAA
AGACTCTAACTACGGGACCACAATTGCAAATGGTTTGCTGGATATTCTTA
CCAACGGAGAGCACAGTAAATCCCTGGATGAACTATACAACATGCAGCTT
CATTCATACGAGCAGCGTGAGATTGAAAAGTGTTTTGAACAGGAGGAGGA
AACTTCCAGCCAGCAGGAAACCACCGCCCAAATTGAGCAAGAATATGAAA
AATACAAAAACACACATGTGGACTTCAAGGGATTGCAGTCTCTTGGTGAA
CTTGGCATCGATGTGAGCTTCCTAGACGGCATGGAGGCTGAAATGAAGAG
CTACGAGCTTAATCGGCGCATGCACGAGCATCTTAGTCAAAACTTGACGC
TAATCGAGAAGCTGCGAGTGGCGCAGCACGATCGTTTGTCACAGCCTTTG
CCGAATCACCTGGGTCTGGTGCAGCCCGCCGGTCAGGAGGAGATCCAAAC
CGCCCAGCAATTGACGCAGCAGATCAGCGATTTGGCTAAGAAGTTGCCGC
CTTCCGCCATCGCCGATCCCTATGCCTTGCGAAAAGCTATGGGCATGTCC
TATGCTGGCTTGCCGCCACCTCGACCCGTCTCTCCGCGCGTCCAGCTGCC
TGAGCTGCTCCAACAGCCGGTGGCCCTGCCACAGTTGCAACCTGTGGCCA
TGGAGATCGACGAGTCTGATGAACAGCATGGCGGTGGAGATCTGGAGAAC
GAACTGCGCGAGTTCCTCGAGAGCGGATCTGGCCTCCATTCTGCCAATCC
GGCGGATGACAACAGCATTGTTGCTCAGCTGTTGCTGAACTAGGAGATCG
GGAAATCTCCAAGACGCGCGCTATGTTTATAATGTAAGATAAAGAAATTT
CTCTAAATTATTTTCATATATTCAATGCGTTGGCACTCTAAATAAAAATT
AAGCTAATATTAAAGAAAAAAAAAAAAAAAAAA

LD22651.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:51:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-RA 2883 CG7154-RA 28..2844 1..2817 14085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7783059..7784724 789..2454 8270 99.8 Plus
chr2L 23010047 chr2L 7782381..7783005 164..788 3125 100 Plus
chr2L 23010047 chr2L 7784784..7785145 2454..2815 1810 100 Plus
chr2L 23010047 chr2L 7781968..7782132 1..165 810 99.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7783975..7785640 789..2454 8330 100 Plus
2L 23513712 2L 7783297..7783921 164..788 3125 100 Plus
2L 23513712 2L 7785700..7786063 2454..2817 1820 100 Plus
2L 23513712 2L 7782884..7783048 1..165 825 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:17:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7783975..7785640 789..2454 8330 100 Plus
2L 23513712 2L 7783297..7783921 164..788 3125 100 Plus
2L 23513712 2L 7785700..7786063 2454..2817 1820 100 Plus
2L 23513712 2L 7782884..7783048 1..165 825 100 Plus
Blast to na_te.dros performed 2019-03-16 10:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 2331..2389 2813..2752 121 72.6 Minus

LD22651.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:13 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7784785..7785145 2455..2815 100   Plus
chr2L 7781968..7782132 1..165 99 -> Plus
chr2L 7782383..7783005 166..788 100 -> Plus
chr2L 7783059..7784724 789..2454 99 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:55 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1..2586 108..2693 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:21:17 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1..2586 108..2693 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:56:02 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1..2586 108..2693 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:47:34 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1..2586 108..2693 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:33 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 1..2586 108..2693 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:55:29 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 28..2842 1..2815 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:21:16 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 28..2842 1..2815 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:56:02 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 20..2834 1..2815 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:47:34 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 28..2842 1..2815 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:33 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
CG7154-RA 20..2834 1..2815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:13 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7782884..7783048 1..165 100 -> Plus
2L 7783299..7783921 166..788 100 -> Plus
2L 7783975..7785640 789..2454 100 -> Plus
2L 7785701..7786061 2455..2815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:13 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7782884..7783048 1..165 100 -> Plus
2L 7783299..7783921 166..788 100 -> Plus
2L 7783975..7785640 789..2454 100 -> Plus
2L 7785701..7786061 2455..2815 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:13 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7782884..7783048 1..165 100 -> Plus
2L 7783299..7783921 166..788 100 -> Plus
2L 7783975..7785640 789..2454 100 -> Plus
2L 7785701..7786061 2455..2815 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:56:02 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7782884..7783048 1..165 100 -> Plus
arm_2L 7783299..7783921 166..788 100 -> Plus
arm_2L 7783975..7785640 789..2454 100 -> Plus
arm_2L 7785701..7786061 2455..2815 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:24:02 Download gff for LD22651.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7783299..7783921 166..788 100 -> Plus
2L 7783975..7785640 789..2454 100 -> Plus
2L 7785701..7786061 2455..2815 100   Plus
2L 7782884..7783048 1..165 100 -> Plus

LD22651.pep Sequence

Translation from 107 to 2692

> LD22651.pep
MGSSKKHKKNKSERREKYEEYSQHQDPAQLQRGLKLILKVGSNATPEYSA
NSPMVDGGPPTAAEAMMSPVPEELQDHQGHRERHKKSKKKKKKKDREKKH
KHHKEKRHRSRDRHRDAGSDEDMMAGADDAACSGFAPSSVAPPAADPDSS
QDGFSFMDDDQSQPLPENILFFAGITTDNSPSNCPVTKPIAPRKLDDILM
GSSPNSSSLQSSSLGLIGSSPTKPLPDLLIPSPSTPGGANSLNALTPKAL
EAPKTPSSSSESGREPRSCVLKLKQQKSPLNKLLEHLLRFLEKRDPHQFF
AWPVTDDMAPGYSSIISRPMDFSTMRQKIDDHEYTALTEFTDDFKLMCEN
AIKYNHVDTVYNKAAKRLLQVGMKHLQPENLMRSLKPLSGYMRELTAREL
GFELSSNDMSRENNDSADEGASTGAEEPRTPAQLEEEERKRTLRLENAPK
THFEPYVDDLTGEEILAQVQNAAQQAKQRVNAKKNAHKMGFLRQMKDGTT
TLNLVIKEENEGPERVVTIGDLVGKLQKGSAQLQTRQVDKRNAVRTVKSL
NYGAFASFAPTFDSRFSTLSAEETQLVLRTYGDASSAEYAESILQFTKDS
NYGTTIANGLLDILTNGEHSKSLDELYNMQLHSYEQREIEKCFEQEEETS
SQQETTAQIEQEYEKYKNTHVDFKGLQSLGELGIDVSFLDGMEAEMKSYE
LNRRMHEHLSQNLTLIEKLRVAQHDRLSQPLPNHLGLVQPAGQEEIQTAQ
QLTQQISDLAKKLPPSAIADPYALRKAMGMSYAGLPPPRPVSPRVQLPEL
LQQPVALPQLQPVAMEIDESDEQHGGGDLENELREFLESGSGLHSANPAD
DNSIVAQLLLN*

LD22651.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21787-PA 863 GF21787-PA 1..862 1..859 3776 90.6 Plus
Dana\GF12236-PA 1431 GF12236-PA 617..709 276..368 195 40.9 Plus
Dana\GF10890-PA 259 GF10890-PA 151..222 301..368 155 43.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10496-PA 861 GG10496-PA 1..861 1..861 4457 96.9 Plus
Dere\GG10760-PA 1428 GG10760-PA 612..704 276..368 200 41.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13677-PA 903 GH13677-PA 1..903 1..861 3145 77.3 Plus
Dgri\GH20368-PA 1441 GH20368-PA 603..695 276..368 187 39.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-PA 861 CG7154-PA 1..861 1..861 4434 100 Plus
Br140-PB 1430 CG1845-PB 612..704 276..368 187 40.9 Plus
Br140-PA 1430 CG1845-PA 612..704 276..368 187 40.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17104-PA 857 GI17104-PA 1..857 1..861 3027 77.1 Plus
Dmoj\GI20042-PA 1442 GI20042-PA 600..692 276..368 197 41.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19286-PA 803 GL19286-PA 229..803 292..861 2427 86.3 Plus
Dper\GL19286-PA 803 GL19286-PA 1..229 1..227 634 81 Plus
Dper\GL10942-PA 1430 GL10942-PA 607..699 276..368 199 41.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20141-PA 868 GA20141-PA 1..868 1..861 3362 85.3 Plus
Dpse\GA14940-PA 1430 GA14940-PA 607..699 276..368 199 41.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16565-PA 861 GM16565-PA 1..861 1..861 4525 98.4 Plus
Dsec\GM20806-PA 1430 GM20806-PA 612..704 276..368 200 41.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23488-PA 861 GD23488-PA 1..861 1..861 4544 98.7 Plus
Dsim\GD15310-PA 913 GD15310-PA 612..704 276..368 198 41.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16143-PA 897 GJ16143-PA 1..897 1..861 3165 80 Plus
Dvir\GJ21285-PA 1443 GJ21285-PA 596..688 276..368 194 41.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24409-PA 885 GK24409-PA 1..885 1..861 2705 65.4 Plus
Dwil\GK21522-PA 1433 GK21522-PA 631..723 276..368 186 39.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14624-PA 861 GE14624-PA 1..861 1..861 4449 96.4 Plus
Dyak\GE24125-PA 1420 GE24125-PA 612..704 276..368 200 41.9 Plus

LD22651.hyp Sequence

Translation from 107 to 2692

> LD22651.hyp
MGSSKKHKKNKSERREKYEEYSQHQDPAQLQRGLKLILKVGSNATPEYSA
NSPMVDGGPPTAAEAMMSPVPEELQDHQGHRERHKKSKKKKKKKDREKKH
KHHKEKRHRSRDRHRDAGSDEDMMAGADDAACSGFAPSSVAPPAADPDSS
QDGFSFMDDDQSQPLPENILFFAGITTDNSPSNCPVTKPIAPRKLDDILM
GSSPNSSSLQSSSLGLIGSSPTKPLPDLLIPSPSTPGGANSLNALTPKAL
EAPKTPSSSSESGREPRSCVLKLKQQKSPLNKLLEHLLRFLEKRDPHQFF
AWPVTDDMAPGYSSIISRPMDFSTMRQKIDDHEYTALTEFTDDFKLMCEN
AIKYNHVDTVYNKAAKRLLQVGMKHLQPENLMRSLKPLSGYMRELTAREL
GFELSSNDMSRENNDSADEGASTGAEEPRTPAQLEEEERKRTLRLENAPK
THFEPYVDDLTGEEILAQVQNAAQQAKQRVNAKKNAHKMGFLRQMKDGTT
TLNLVIKEENEGPERVVTIGDLVGKLQKGSAQLQTRQVDKRNAVRTVKSL
NYGAFASFAPTFDSRFSTLSAEETQLVLRTYGDASSAEYAESILQFTKDS
NYGTTIANGLLDILTNGEHSKSLDELYNMQLHSYEQREIEKCFEQEEETS
SQQETTAQIEQEYEKYKNTHVDFKGLQSLGELGIDVSFLDGMEAEMKSYE
LNRRMHEHLSQNLTLIEKLRVAQHDRLSQPLPNHLGLVQPAGQEEIQTAQ
QLTQQISDLAKKLPPSAIADPYALRKAMGMSYAGLPPPRPVSPRVQLPEL
LQQPVALPQLQPVAMEIDESDEQHGGGDLENELREFLESGSGLHSANPAD
DNSIVAQLLLN*

LD22651.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7154-PA 861 CG7154-PA 1..861 1..861 4434 100 Plus
Br140-PB 1430 CG1845-PB 612..704 276..368 187 40.9 Plus
Br140-PA 1430 CG1845-PA 612..704 276..368 187 40.9 Plus