Clone LD22661 Report

Search the DGRC for LD22661

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:226
Well:61
Vector:pOT2
Associated Gene/TranscriptCG12264-RA
Protein status:LD22661.pep: gold
Preliminary Size:1300
Sequenced Size:1552

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12264 2001-01-01 Release 2 assignment
CG12264 2002-04-22 Blastp of sequenced clone
CG12264 2003-01-01 Sim4 clustering to Release 3
CG12264 2008-04-29 Release 5.5 accounting
CG12264 2008-08-15 Release 5.9 accounting
CG12264 2008-12-18 5.12 accounting

Clone Sequence Records

LD22661.complete Sequence

1552 bp (1552 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113363

> LD22661.complete
AATACGGTCCCACTGATTGTGAAATCCGTGATAACGAATTTTAACACCAG
AATTTCTAGGATTCCATCAGAATGCAAAAAGTGCTGGGACGCATCCAGGC
GCAGGTCCTCCGCTCCCGGGCGACGAATGCATTAGCCAATGTGGTTAGAC
ACGAGGCCACCTCCTCCAGGACAGCGGCTAAACCAGCCGCCACATCCAAA
GAATTCCGGGAGAGACAGGTGCGATTCAACATAAAGAACGAACAGACCGA
GGGTAGACCACTTTACCTGGATGCCCAGGCCACCACTCCAATGGACCCAC
GTGTATTGGACGCTATGCTCCCCTATCTGACCAATTTCTACGGAAATCCC
CACTCCCGTACCCACGCCTACGGTTGGGAAACAGAGTCCGCTGTAGAAAA
GGCCCGCGAGCAGGTGGCCACCCTGATTGGCGCCGATCCCAAGGAGATCA
TCTTCACATCCGGCGCCACCGAGTCGAATAATATCGCAGTAAAGGGTGTT
GCCCGTTTCTACGGCACTAAGAAGCGACACGTGATCACCACCCAGACGGA
GCACAAGTGCGTGCTGGACTCTTGTCGTGCTTTAGAGAACGAGGGCTTTA
AAGTCACGTACCTGCCAGTGCTGGCCAACGGACTCATCGACCTCCAGCAA
CTGGAGGAAACCATCACATCGGAGACCTCGCTGGTGTCCATTATGACGGT
GAATAACGAAATCGGCGTACGGCAACCCGTCGATGAGATTGGCAAACTGT
GCCGGTCTCGCCGAGTATTCTTTCACACGGATGCCGCTCAGGCGGTGGGA
AAGGTCCCGCTGGACGTTAACGCCATGAACATTGACCTGATGTCTATATC
CGGCCACAAAATCTACGGCCCAAAGGGTGTAGGCGCCCTGTATGTCCGAC
GAAGGCCGAGGGTTCGCCTCGAGCCCATCCAAAGTGGCGGCGGCCAGGAG
CGTGGCCTAAGGAGCGGAACGGTTCCAGCCCCGCTCGCCGTGGGATTGGG
AGCTGCTGCGGAACTTTCTTTGCGTGAGATGGACTACGACAAGAAATGGG
TGGACTTTCTATCCAATCGCCTGCTGGACAGGATTTCAAGTGCCTTGCCG
CATGTCATCAGGAATGGTGATGCCAAAGCCACATACAATGGTTGCCTGAA
TTTGTCGTTTGCCTATGTCGAGGGCGAGTCACTACTGATGGCTCTTAAGG
ACGTGGCCCTGAGCAGTGGGTCCGCCTGCACCTCCGCCTCCCTGGAGCCC
TCCTATGTTCTGCGTGCCATCGGCACCGACGAGGATCTTGCCCACAGCTC
CATACGCTTTGGCATCGGGCGCTTTACCACCGTCGAGGAGGTGGACTACA
CCGCCGATAAGTGCATCAAGCATGTGGAGCGACTGCGCGAGATGTCGCCG
CTGTGGGAGATGGTCCAAGAGGGCATCGACCTAAAGACCATCCAATGGTC
GCAGCATTAATGTACTAATATTTAAGCCGTTACTGTTACACCACACTTTG
AAAGCGAAGGGAAAATAAATTTGTTGGAAGAGTAAAAAAAAAAAAAAAAA
AA

LD22661.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-RA 1538 CG12264-RA 6..1538 1..1533 7665 100 Plus
CG31864-RA 753 CG31864-RA 6..353 1..348 1740 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:23:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11998573..11999906 200..1533 6670 100 Plus
chr2L 23010047 chr2L 11994405..11994605 1..201 1005 100 Plus
chr2L 23010047 chr2L 11998316..11998516 1..201 1005 100 Plus
chr2L 23010047 chr2L 11994662..11994810 200..348 745 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:11:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11999911..12001245 200..1534 6675 100 Plus
2L 23513712 2L 11995743..11995943 1..201 1005 100 Plus
2L 23513712 2L 11999654..11999854 1..201 1005 100 Plus
2L 23513712 2L 11996000..11996148 200..348 745 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11999911..12001245 200..1534 6675 100 Plus
2L 23513712 2L 11999654..11999854 1..201 1005 100 Plus
2L 23513712 2L 11995743..11995943 1..201 1005 100 Plus
2L 23513712 2L 11996000..11996148 200..348 745 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:23:51 has no hits.

LD22661.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:24:46 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11998316..11998516 1..201 100 -> Plus
chr2L 11998575..11999906 202..1533 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:58:57 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 72..1460 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:28 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 72..1460 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:17:58 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 72..1460 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:47 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 72..1460 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:48 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1389 72..1460 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:38:48 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:28 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:17:58 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:47 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1533 1..1533 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:48 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
CG12264-RA 1..1533 1..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:46 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11999654..11999854 1..201 100 -> Plus
2L 11999913..12001244 202..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:46 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11999654..11999854 1..201 100 -> Plus
2L 11999913..12001244 202..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:46 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11999654..11999854 1..201 100 -> Plus
2L 11999913..12001244 202..1533 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:17:58 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11999654..11999854 1..201 100 -> Plus
arm_2L 11999913..12001244 202..1533 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:48 Download gff for LD22661.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11999913..12001244 202..1533 100   Plus
2L 11999654..11999854 1..201 100 -> Plus

LD22661.hyp Sequence

Translation from 71 to 1459

> LD22661.hyp
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAY
GWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK
KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITS
ETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVN
AMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGT
VPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGD
AKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAI
GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE
GIDLKTIQWSQH*

LD22661.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12264-PA 462 CG12264-PA 1..462 1..462 2357 100 Plus
Qtzl-PC 123 CG31864-PC 1..92 1..92 462 100 Plus
Qtzl-PA 123 CG31864-PA 1..92 1..92 462 100 Plus

LD22661.pep Sequence

Translation from 71 to 1459

> LD22661.pep
MQKVLGRIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQV
RFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAY
GWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK
KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITS
ETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVN
AMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGT
VPAPLAVGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGD
AKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAI
GTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE
GIDLKTIQWSQH*

LD22661.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14410-PA 456 GF14410-PA 1..456 1..462 2297 91.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23754-PA 458 GG23754-PA 1..458 1..462 2420 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13097-PA 457 GH13097-PA 1..457 1..462 2219 88.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Nfs1-PA 462 CG12264-PA 1..462 1..462 2357 100 Plus
Qtzl-PC 123 CG31864-PC 1..92 1..92 462 100 Plus
Qtzl-PA 123 CG31864-PA 1..92 1..92 462 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:19:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14175-PA 460 GI14175-PA 1..460 1..462 2159 87.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16085-PA 465 GL16085-PA 1..465 1..462 2223 87.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11518-PA 465 GA11518-PA 1..465 1..462 2227 88.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26695-PA 458 GM26695-PA 1..458 1..462 2429 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23806-PA 430 GD23806-PA 1..430 1..462 2218 91.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:19:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17504-PA 467 GJ17504-PA 1..467 1..462 2151 85.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23747-PA 461 GK23747-PA 1..461 1..462 2148 85.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18561-PA 462 GE18561-PA 1..462 1..462 2459 98.3 Plus