Clone LD22691 Report

Search the DGRC for LD22691

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:226
Well:91
Vector:pOT2
Associated Gene/TranscriptMlc2-RA
Protein status:LD22691.pep: gold
Preliminary Size:4600
Sequenced Size:1971

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2184 2001-01-01 Release 2 assignment
CG2184 2001-09-19 Blastp of sequenced clone
CG2184 2003-01-01 Sim4 clustering to Release 3
Mlc2 2008-04-29 Release 5.5 accounting
Mlc2 2008-08-15 Release 5.9 accounting
Mlc2 2008-12-18 5.12 accounting

Clone Sequence Records

LD22691.complete Sequence

1971 bp assembled on 2007-03-08

GenBank Submission: AY060369

> LD22691.complete
CGGCTCGACTCGATTAGACAACACATCAAAGTTCAGCACCATGGCCGATG
AGAAGAAGAAGGTTAAGAAGAAGAAGACCAAGGAAGAGGGTGGTACTTCC
GAAACCGCTTCTGAGGCCGCATCCGAGGCAGCAACCCCGGCACCAGCTGC
CACTCCTGCCCCGGCCGCATCTGCCACTGGTTCGAAGAGAGCGTCGGGCG
GATCCCGTGGCTCCAGGAAGTCGAAGCGCGCTGGCTCCTCGGTCTTCTCT
GTGTTCTCCCAGAAGCAGATCGCCGAGTTCAAGGAGGCCTTCCAACTCAT
GGATGCCGACAAGGACGGTATTATTGGCAAGAACGATCTGCGCGCTGCCT
TCGACTCCGTCGGCAAGATCGCCAACGACAAGGAGTTGGACGCCATGCTG
GGCGAGGCCTCGGGTCCGATCAACTTCACCCAGTTGCTGACCCTGTTCGC
CAACCGCATGGCCACCTCCGGTGCCAACGATGAAGACGAAGTTGTTATTG
CTGCCTTCAAAACATTCGATAACGATGGTCTCATCGACGGTGACAAATTC
CGCGAAATGCTCATGAACTTCGGTGACAAGTTCACCATGAAGGAGGTTGA
TGATGCCTACGATCAGATGGTGATCGACGACAAGAACCAGATCGATACCG
CCGCCCTGATCGAGATGCTCACCGGCAAGGGTGAAGAGGAGGAGGAGGAG
GCCGCCTAAGGCACATCCGATCACATCCTAACTTCTAACTCAACATCCAT
TTTACAGCCAGAATCAGAACGTTAAATCAATCAGTCAAATCAGTAATAAT
AAACGTAATTAAAAGAAACGCTCGTTTACATATGTAGATTCTCAGTATCT
TGTAATCTCTTTTGTTAACCATCACCAAGTACCTTGTACCAAGAACAACA
CCACCAACCAGATCAGCAACATCCGATCAAACTGAACCTCAAAAGAACTT
CTTCAGCAACATTTGGTAGCGATCAGAACCATTTACCATGTATCTGTCCA
TCATAGTTAGGGATACTTACGATCACGTTCACTGTCACGGCAAGAACTGA
CGCGTAGTTTTCTAGTTGATTTACTGTTAAATTTTACACGTAAAATTTAT
AAAACATATGCTATCTATTTTATTTAAAACACCTATAAAATCAACAAAAA
AAACTTAAAAACAACAAACAAGCCGTGTCTATTTTTATATCGCTGTCCGT
TGAAGAACTAAAGAGAAGAACCCCCAGAGAGAGATGATTACCAGATCGAG
ATCGAGATCGGAATCGAAATGAGGATGTATGATGTATGATTTATGATGTA
GGGAGGACGAAGACGATGTTGATGGGTAGCCGGGCTGTATTCGTTAGCCC
TGCACCCGCGAGTTCAATTTGATTATGAATATGAATTTTAGCCAGTTTTG
TGAGTTACAATGTTTTTCGTTCAAGAAATCTCGCAGGACCAGGAGAGAGA
GAGGTAAACCCATAACAAACTATTGTTAGGGATCATTTAACTGAGAGCCA
AATATATATCCTACTATCACAAAATATTTATCGTTATACATATCTATCGT
TCGTTACTTACTTATTTATCAGTTATGAGTTATCAATATTATTGCAAGTT
ATCGAGAGTTAGGCTAATAACAGAGAAACATTAAGTTCATTCACTCAAAT
TGTTTAATGCGAATTTATATAACTTAACCATCGCCACCACCACAACTTTC
TGCTTATGAACTATCAGCGATATAAACCACCCAAACGAACAAACAACCCA
AAATGATATCTGAAATATGAAGAAACATTCAAATAACAAACCCAGTGTTT
CTAGTTAATGCGTTTTGAAGCTTCCAGGATGATACGCCTCCCCGGGAAAT
AGACGGTCGGGGGGGTTTTAGTTTGAATAAGGTGCCCATAACCACTAGTA
CCTAGGCTGATCGGAGGAAGCACAATATATTGCCTTATTTATCTAAAAAA
AAAAAAAAAAAAAAAAAAAAA

LD22691.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-RA 2610 Mlc2-RA 334..2279 1..1946 9730 100 Plus
Mlc2.b 2652 Mlc2.b 376..2321 1..1946 9730 100 Plus
Mlc2.c 3294 Mlc2.c 1018..2963 1..1946 9730 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25994222..25995883 1944..285 8185 99.6 Minus
chr3R 27901430 chr3R 25996040..25996284 287..43 1225 100 Minus
chr3R 27901430 chr3R 25996952..25996995 44..1 220 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30171753..30173414 1946..285 8310 100 Minus
3R 32079331 3R 30173571..30173815 287..43 1225 100 Minus
3R 32079331 3R 30174483..30174526 44..1 220 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29912584..29914245 1946..285 8310 100 Minus
3R 31820162 3R 29914402..29914646 287..43 1225 100 Minus
3R 31820162 3R 29915314..29915357 44..1 220 100 Minus
Blast to na_te.dros performed on 2019-03-15 18:20:52 has no hits.

LD22691.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:22:00 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25994222..25995881 287..1944 99 <- Minus
chr3R 25996041..25996283 44..286 100 <- Minus
chr3R 25996953..25996995 1..43 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:04 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 41..709 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:19:51 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 41..709 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:26 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 41..709 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:16:46 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 41..709 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:58:46 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 1..669 41..709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:35:45 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 26..1969 1..1944 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:19:50 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 26..1969 1..1944 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:26 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 26..1969 1..1944 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:16:46 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 26..1969 1..1944 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:58:46 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
Mlc2-RA 26..1969 1..1944 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:00 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30173572..30173814 44..286 100 <- Minus
3R 30174484..30174526 1..43 100   Minus
3R 30171755..30173412 287..1944 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:00 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30173572..30173814 44..286 100 <- Minus
3R 30174484..30174526 1..43 100   Minus
3R 30171755..30173412 287..1944 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:22:00 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30173572..30173814 44..286 100 <- Minus
3R 30174484..30174526 1..43 100   Minus
3R 30171755..30173412 287..1944 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:26 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25997477..25999134 287..1944 100 <- Minus
arm_3R 25999294..25999536 44..286 100 <- Minus
arm_3R 26000206..26000248 1..43 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:08:27 Download gff for LD22691.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29915315..29915357 1..43 100   Minus
3R 29912586..29914243 287..1944 100 <- Minus
3R 29914403..29914645 44..286 100 <- Minus

LD22691.hyp Sequence

Translation from 0 to 708

> LD22691.hyp
GSTRLDNTSKFSTMADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAA
TPAPAASATGSKRASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLM
DADKDGIIGKNDLRAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFA
NRMATSGANDEDEVVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVD
DAYDQMVIDDKNQIDTAALIEMLTGKGEEEEEEAA*

LD22691.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-PA 222 CG2184-PA 1..222 14..235 1103 100 Plus
sqh-PE 174 CG3595-PE 2..150 61..208 303 44.1 Plus
sqh-PD 174 CG3595-PD 2..150 61..208 303 44.1 Plus
sqh-PC 174 CG3595-PC 2..150 61..208 303 44.1 Plus
sqh-PB 174 CG3595-PB 2..150 61..208 303 44.1 Plus

LD22691.pep Sequence

Translation from 40 to 708

> LD22691.pep
MADEKKKVKKKKTKEEGGTSETASEAASEAATPAPAATPAPAASATGSKR
ASGGSRGSRKSKRAGSSVFSVFSQKQIAEFKEAFQLMDADKDGIIGKNDL
RAAFDSVGKIANDKELDAMLGEASGPINFTQLLTLFANRMATSGANDEDE
VVIAAFKTFDNDGLIDGDKFREMLMNFGDKFTMKEVDDAYDQMVIDDKNQ
IDTAALIEMLTGKGEEEEEEAA*

LD22691.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16196-PA 201 GF16196-PA 1..201 1..222 980 89.6 Plus
Dana\GF20304-PA 174 GF20304-PA 2..150 48..195 308 43.4 Plus
Dana\GF12835-PA 149 GF12835-PA 5..149 72..213 204 35.1 Plus
Dana\GF17950-PA 230 GF17950-PA 82..230 76..215 204 32.9 Plus
Dana\GF16772-PA 148 GF16772-PA 2..148 70..213 149 30.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11956-PA 201 GG11956-PA 1..201 1..222 988 90.1 Plus
Dere\GG17688-PA 174 GG17688-PA 2..150 48..195 308 43.4 Plus
Dere\GG18839-PA 230 GG18839-PA 82..230 76..215 207 32.9 Plus
Dere\GG20265-PA 149 GG20265-PA 5..149 72..213 204 35.1 Plus
Dere\GG11425-PA 148 GG11425-PA 2..148 70..213 138 28.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18385-PA 200 GH18385-PA 1..200 1..222 740 84.7 Plus
Dgri\GH24837-PA 174 GH24837-PA 2..150 48..195 304 42.8 Plus
Dgri\GH20591-PA 228 GH20591-PA 81..222 76..212 205 32.4 Plus
Dgri\GH23405-PA 151 GH23405-PA 8..151 73..213 169 33.3 Plus
Dgri\GH22800-PA 122 GH22800-PA 8..100 72..163 151 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mlc2-PA 222 CG2184-PA 1..222 1..222 1103 100 Plus
sqh-PE 174 CG3595-PE 2..150 48..195 303 44.1 Plus
sqh-PD 174 CG3595-PD 2..150 48..195 303 44.1 Plus
sqh-PC 174 CG3595-PC 2..150 48..195 303 44.1 Plus
sqh-PB 174 CG3595-PB 2..150 48..195 303 44.1 Plus
sqh-PA 174 CG3595-PA 2..150 48..195 303 44.1 Plus
Cam-PD 149 CG8472-PD 6..149 73..213 221 35.4 Plus
Cam-PC 149 CG8472-PC 6..149 73..213 221 35.4 Plus
Cam-PE 149 CG8472-PE 6..149 73..213 221 35.4 Plus
Cam-PB 149 CG8472-PB 6..149 73..213 221 35.4 Plus
Cam-PA 149 CG8472-PA 6..149 73..213 221 35.4 Plus
CG33098-PF 230 CG33098-PF 19..230 23..219 197 28.8 Plus
CG33098-PE 230 CG33098-PE 19..230 23..219 197 28.8 Plus
CG33098-PB 230 CG33098-PB 19..230 23..219 197 28.8 Plus
CG33098-PD 164 CG33098-PD 16..164 76..219 195 31.6 Plus
CG11638-PA 387 CG11638-PA 207..363 73..219 176 29.7 Plus
Acam-PB 148 CG17769-PB 2..148 70..213 172 30 Plus
Acam-PA 148 CG17769-PA 2..148 70..213 172 30 Plus
CG17770-PA 164 CG17770-PA 21..162 73..211 149 28.3 Plus
CG33098-PC 199 CG33098-PC 19..166 23..163 143 28.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23377-PA 212 GI23377-PA 29..212 17..222 778 85.4 Plus
Dmoj\GI16168-PA 174 GI16168-PA 2..150 48..195 314 44.1 Plus
Dmoj\GI23199-PA 520 GI23199-PA 83..224 76..212 208 32.4 Plus
Dmoj\GI20594-PA 149 GI20594-PA 5..149 72..213 204 35.1 Plus
Dmoj\GI10339-PA 149 GI10339-PA 5..149 72..213 161 32.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14063-PA 200 GL14063-PA 1..200 2..222 958 87.8 Plus
Dper\GL10814-PA 149 GL10814-PA 5..149 72..213 204 35.1 Plus
Dper\GL27306-PA 230 GL27306-PA 82..223 76..212 199 32.4 Plus
Dper\GL21357-PA 127 GL21357-PA 6..98 97..190 187 43.8 Plus
Dper\GL21536-PA 148 GL21536-PA 4..148 72..213 140 30.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15288-PB 222 GA15288-PB 1..222 1..222 1102 97.3 Plus
Dpse\GA17546-PA 174 GA17546-PA 2..150 48..195 308 43.4 Plus
Dpse\GA24499-PA 149 GA24499-PA 5..149 72..213 204 35.1 Plus
Dpse\GA17278-PA 230 GA17278-PA 82..223 76..212 199 32.4 Plus
Dpse\GA11114-PA 386 GA11114-PA 204..362 71..219 150 29.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12174-PA 201 GM12174-PA 1..201 1..222 989 90.5 Plus
Dsec\GM12587-PA 174 GM12587-PA 2..150 48..195 308 43.4 Plus
Dsec\GM24024-PA 230 GM24024-PA 82..230 76..215 206 32.9 Plus
Dsec\GM11056-PA 230 GM11056-PA 82..230 76..215 206 32.9 Plus
Dsec\GM21351-PA 149 GM21351-PA 5..149 72..213 204 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17257-PA 201 GD17257-PA 1..201 1..222 989 90.5 Plus
Dsim\sqh-PA 174 GD16204-PA 2..150 48..195 308 43.4 Plus
Dsim\GD10849-PA 149 GD10849-PA 5..149 72..213 204 35.1 Plus
Dsim\GD21235-PA 148 GD21235-PA 2..148 70..213 150 30 Plus
Dsim\GD18824-PA 196 GD18824-PA 82..166 76..163 150 33 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10371-PA 200 GJ10371-PA 1..200 1..222 771 85.6 Plus
Dvir\GJ19134-PA 174 GJ19134-PA 2..150 48..195 308 43.4 Plus
Dvir\GJ16661-PA 174 GJ16661-PA 2..150 48..195 308 43.4 Plus
Dvir\GJ22859-PA 230 GJ22859-PA 83..224 76..212 204 33.1 Plus
Dvir\GJ10193-PA 151 GJ10193-PA 10..151 75..213 160 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13145-PA 222 GK13145-PA 1..222 1..222 1119 99.1 Plus
Dwil\GK17694-PA 174 GK17694-PA 2..150 48..195 312 44.1 Plus
Dwil\GK22183-PA 149 GK22183-PA 5..149 72..213 204 35.1 Plus
Dwil\GK11881-PA 230 GK11881-PA 82..230 76..215 195 32.2 Plus
Dwil\GK18988-PA 148 GK18988-PA 2..148 70..213 155 31.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Mlc2-PA 201 GE23405-PA 1..201 1..222 988 90.1 Plus
Dyak\sqh-PA 174 GE16476-PA 2..150 48..195 308 43.4 Plus
Dyak\GE26184-PA 230 GE26184-PA 82..230 76..215 206 32.9 Plus
Dyak\Cam-PA 149 GE12425-PA 5..149 72..213 204 35.1 Plus
Dyak\GE16550-PA 348 GE16550-PA 166..324 71..219 150 29.4 Plus