Clone LD22701 Report

Search the DGRC for LD22701

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:227
Well:1
Vector:pOT2
Associated Gene/TranscriptBx42-RA
Protein status:LD22701.pep: gold
Preliminary Size:2200
Sequenced Size:1956

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8264 2001-01-01 Release 2 assignment
CG8264 2002-04-22 Blastp of sequenced clone
CG8264 2003-01-01 Sim4 clustering to Release 3
Bx42 2008-04-29 Release 5.5 accounting
Bx42 2008-08-15 Release 5.9 accounting
Bx42 2008-12-18 5.12 accounting

Clone Sequence Records

LD22701.complete Sequence

1956 bp (1956 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113364

> LD22701.complete
CCCTACACACCCGTACGCTTGTGTGTGTCCGTGTGCGTGCGTGTTTTTTT
TTTTCGACTTTTCCATTATAGTTTTTGTGGCTTGCATATTGAAAAGTGAT
TTCACATAAGAATTGATTCGCCACAAATAACAGATAAGCTATGTCGCTAT
CAAGCCTGCTGCCCACGCCGACGAACGCGATCTGGGATCGGGAGGACGAG
CGTCGCCTGGTCGCCCGCGGAGCACCAAAGATCGGAGCCCTGGTCTCCGC
CAAAATCGCTGCTCCGCCGTACGGACAGCGTAAGGATTGGGTACCACATA
CGGATGCGGACTTTGGCGATGGCGGCGCCTTCCCGGAGATCCATGTGGCG
CAATATCCACTAGGTCTGGGAGCACCAGGAAATGTTGGCAAGAAGTCGGA
TGCTCTGGCCGTTCGCCTGGACGACAAGGGAAAGGTTAAATACGATGCCA
TAGCACGCCAAGGACATGGCAAGGACAAGATTGTGTACTCGTCCATTTCG
CAACTGCTGCCGGCGGAGGTGTTGGCCGAAGATGCGGATGAACTACAGCG
CCCGGACGAGGAAACGGTGATGGAGACGACGGAGGAGACGCGCCTGGCGC
TGGAGAAGCTGACCAACCAGAAGATCACCTCAGCGCTGCCCGTGCGCCAT
GCCCAGAAGGCGGGTCCCGCCCAGTACATTCGGTACACGCCCTCGCAGCA
GGGCGATACCTTCAATTCGGGCGCCAAGCAGCGTGTCATCCGGATGGTGG
AGGCGCAGCTCGATCCGATGGAGCCGCCCAAGTTCCGCATTAACAAAAAG
ATTCCACGAGGTCCACCATCGCCGCCGGCACCTGTCCTCCACTCACCATC
GCGCAAGGTGACGGTCAAGGAGCAAAAGGAGTGGAAGATCCCGCCCTGCA
TATCGAACTGGAAGAACGCCAAAGGTTACACCATTCCACTGGACAAGCGT
CTGGCAGCCGATGGACGCGGTCTGCAGCAGGTGCACATCAACGAGAAGTT
CGCCAAGATGGCCGAGGCGCTGTACATAGCCGATCGCAAGGCGCGCGAGG
CGGTGGAGGCACGCTCCCAGCTGGAAAAGAAGCTGGCCCAAAAGGAGAAG
GAGAAGAAGGAGGATATGCTGCGTATGATGGCGCAGCGGGCTCGCGAAGA
GCGAGCGGGACTACGCAATCCGGAGGCAGCCGAGCCATCTGGTTCCGGAG
CTACAGGATCCGAGGTGCGTGAACGCAACGACTTGCGGGCAGAGCGGCAA
AGGGAGCGCCAGCGGGATAGAAACCTGCAGCGGGCGGCTCCCGAAAAGCG
ATCGAAACTGCAGAAGGAGAGGGAGCGTGACATTTCTGAGCAAATCGCTT
TGGGTCTGCCCGCCAAGAGTGCCGGCAACGGTGAAACGCTCTTCGATCAG
CGTCTATTCAACACCACCAAGGGCATGGACTCCGGTTACGGTGATGACGA
AGCGTACAATGTGTACGACAAGCCGTGGCGCGATTCCAATACACTGGGCG
CTCACATCTACCGACCCAGCAAGCAGGCGGATAGCGATAACTACGGCGGT
GATCTGGATGCCATTGTAAATACCAAGCGTTTCGTGCCAGACAAGCAGTT
CTCCGGTGCCTCCAAGGAGGCGGCCGCTGGCCAGAGGAGTGGACCCGTTG
AGTTCGAGAAGGAGGAGGATCCCTTCGGTCTCGATCAGTTCTTGAACATG
GCCAAAAAGGCGCCCAAGCGTGCCGAGGAGAAGAACAACGAGCGCAGCAG
CCATTCGGATCGCAAGCGCAGCAAGCGCGATTAGACAAAAGCTTTAGCGT
GAGGATTACCAATCATCGTTGTATCGTCATCATCATCATTGCAAACACTA
TTCACCATTCACCAACCAAACAAACGTTTTTTTTAACTACTCCAACAACT
TGGCGAGAATTTCAATAATAATCACAGGATCTTGACATAAAAAAAAAAAA
AAAAAA

LD22701.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42.a 2526 Bx42.a 142..2081 1..1941 9665 99.9 Plus
Bx42-RA 2078 Bx42-RA 142..2078 1..1938 9650 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:34:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8996113..8997128 1938..923 5080 100 Minus
chrX 22417052 chrX 8997190..8997754 926..362 2825 100 Minus
chrX 22417052 chrX 8998018..8998381 365..1 1745 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:34:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9104315..9105333 1941..923 5095 100 Minus
X 23542271 X 9105395..9105959 926..362 2825 100 Minus
X 23542271 X 9106223..9106586 365..1 1775 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9112413..9113431 1941..923 5095 100 Minus
X 23527363 X 9113493..9114057 926..362 2825 100 Minus
X 23527363 X 9114321..9114684 365..1 1785 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 16:34:56 has no hits.

LD22701.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:52 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8996113..8997126 925..1938 100 <- Minus
chrX 8997192..8997752 364..924 100 <- Minus
chrX 8998020..8998381 1..363 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:05 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 141..1784 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:29 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 141..1784 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:33 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 141..1784 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:48 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 141..1784 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:14 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 1..1644 141..1784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:38:50 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 17..1953 1..1938 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:29 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 17..1953 1..1938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:33 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 19..1955 1..1938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:48 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 17..1953 1..1938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:14 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
Bx42-RA 19..1955 1..1938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:52 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
X 9104318..9105331 925..1938 100 <- Minus
X 9105397..9105957 364..924 100 <- Minus
X 9106225..9106586 1..363 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:52 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
X 9104318..9105331 925..1938 100 <- Minus
X 9105397..9105957 364..924 100 <- Minus
X 9106225..9106586 1..363 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:52 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
X 9104318..9105331 925..1938 100 <- Minus
X 9105397..9105957 364..924 100 <- Minus
X 9106225..9106586 1..363 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:33 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8998351..8999364 925..1938 100 <- Minus
arm_X 8999430..8999990 364..924 100 <- Minus
arm_X 9000258..9000619 1..363 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:50 Download gff for LD22701.complete
Subject Subject Range Query Range Percent Splice Strand
X 9112416..9113429 925..1938 100 <- Minus
X 9113495..9114055 364..924 100 <- Minus
X 9114323..9114684 1..363 99   Minus

LD22701.pep Sequence

Translation from 140 to 1783

> LD22701.pep
MSLSSLLPTPTNAIWDREDERRLVARGAPKIGALVSAKIAAPPYGQRKDW
VPHTDADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVK
YDAIARQGHGKDKIVYSSISQLLPAEVLAEDADELQRPDEETVMETTEET
RLALEKLTNQKITSALPVRHAQKAGPAQYIRYTPSQQGDTFNSGAKQRVI
RMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKI
PPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIADRK
AREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPS
GSGATGSEVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISE
QIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSN
TLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRS
GPVEFEKEEDPFGLDQFLNMAKKAPKRAEEKNNERSSHSDRKRSKRD*

LD22701.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19111-PA 547 GF19111-PA 1..547 1..547 2809 96.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19003-PA 547 GG19003-PA 1..547 1..547 2833 97.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12382-PA 551 GH12382-PA 1..551 1..547 2457 91.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-PB 547 CG8264-PB 1..547 1..547 2825 100 Plus
Bx42-PA 547 CG8264-PA 1..547 1..547 2825 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15876-PA 543 GI15876-PA 1..543 1..547 2461 92.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12909-PA 509 GL12909-PA 1..509 1..547 2195 81.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20940-PA 547 GA20940-PA 1..547 1..547 2563 93.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13680-PA 541 GM13680-PA 1..541 1..547 2810 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24563-PA 547 GD24563-PA 1..547 1..547 2861 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18702-PA 545 GJ18702-PA 1..545 1..547 2477 93.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16274-PA 549 GK16274-PA 1..549 1..547 2433 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17416-PA 547 GE17416-PA 1..547 1..547 2829 97.4 Plus

LD22701.hyp Sequence

Translation from 140 to 1783

> LD22701.hyp
MSLSSLLPTPTNAIWDREDERRLVARGAPKIGALVSAKIAAPPYGQRKDW
VPHTDADFGDGGAFPEIHVAQYPLGLGAPGNVGKKSDALAVRLDDKGKVK
YDAIARQGHGKDKIVYSSISQLLPAEVLAEDADELQRPDEETVMETTEET
RLALEKLTNQKITSALPVRHAQKAGPAQYIRYTPSQQGDTFNSGAKQRVI
RMVEAQLDPMEPPKFRINKKIPRGPPSPPAPVLHSPSRKVTVKEQKEWKI
PPCISNWKNAKGYTIPLDKRLAADGRGLQQVHINEKFAKMAEALYIADRK
AREAVEARSQLEKKLAQKEKEKKEDMLRMMAQRAREERAGLRNPEAAEPS
GSGATGSEVRERNDLRAERQRERQRDRNLQRAAPEKRSKLQKERERDISE
QIALGLPAKSAGNGETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSN
TLGAHIYRPSKQADSDNYGGDLDAIVNTKRFVPDKQFSGASKEAAAGQRS
GPVEFEKEEDPFGLDQFLNMAKKAPKRAEEKNNERSSHSDRKRSKRD*

LD22701.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
Bx42-PB 547 CG8264-PB 1..547 1..547 2825 100 Plus
Bx42-PA 547 CG8264-PA 1..547 1..547 2825 100 Plus