Clone LD22716 Report

Search the DGRC for LD22716

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:227
Well:16
Vector:pOT2
Associated Gene/TranscriptMESR6-RA
Protein status:LD22716.pep: gold
Preliminary Size:1300
Sequenced Size:1738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6818 2001-01-01 Release 2 assignment
CG6818 2002-05-16 Blastp of sequenced clone
CG6818 2003-01-01 Sim4 clustering to Release 3
MESR6 2008-04-29 Release 5.5 accounting
MESR6 2008-08-15 Release 5.9 accounting
MESR6 2008-12-18 5.12 accounting

Clone Sequence Records

LD22716.complete Sequence

1738 bp (1738 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118919

> LD22716.complete
TCAAAGACCCCAAAATATTAAATACAAAAGAAATTAAGTCTGCTTACCGT
GCAAGTAATTGAACAGTGTGCTAAGGACCCAGTTGTACAGTCAAAGTAAT
CCCGAGGGAAATGGAATCGGATACGCTGGACCAGGAGAGTGCCGCGGCTG
CTCTAAAAAAACTATCGCCAAGTGAAAGTCCCGAAAGTTCGAAGAAATGG
GAGCCGACTTCGGGAGAGTGGGTTGCGGCGGGTGGGGGAGAAGAGGCGCC
GCCAACAAAGAGACAAAAGACTGCAGACGAAAAGGAGGAGAATCGGGAGG
AAGACGAGGATAGCGAGGAGAGCGTTGATGAGGAGGAGGATGATGGCGAG
GGCATCGTCCAGATTGGCGGCACCATCAGCCCAAGGCATTTCCAGCGCAT
CCCCGTCTTTATCGTCGACTACCACAACGATGTGCTGGAGTTCATCTACC
GCTGCTTTGCCACCCGCCACCTTCCGCTGCAGAACAACACCCTTGTCCAC
TTCGACTCGCATCCGGATCTGGTCATTCCACGGCACATTGCCGCCAGTTC
CACCTACCAAAAGGAAACCATGTTAAATGAGCTTAGCATCGAGAACTGGA
TCATGCCCACACTTTATGCAGGACATTTCAACCGCGTCGTGTGGCTGAAG
AACTCATGGTGCCAGCAGCTGCCCACTGGCAGGCACGACTTTAAGGTTGG
ACAAAAGGACGATCGCATTGGAGTGGACTGTCCGTTGGACTACTTTATTG
CCGACGGCAACTACTGCACTACGGAGGATCTGCAGGATGCCAAGAGCGTG
GAGCTGCAGGTTCACGATGCAGACAACGAAAGCCTCAATCCGAACGAATT
CCTAACGGAGAAGGACGCCAAGGGATTCGTGCTGGACATAGACCTCGACT
TTTTCAGCACCTCCAACCCCTTCTTGGAAATATACAAGGATGCCGATTGC
TACAATCAGCTAAAGGAGATCTTCCACTTCGAAAGCGTGGAGAAGGTGAA
GAAGTCGGGCACGGCTACTATAGCAGATTATTTGGCCACGGCAGAGAGGC
GACAGACTCAGTTGGATGCACTGAAGACGATTTTCTGGCATCTGGAGGAG
GAGCGCAATTTCGAGGGACTGGAAAAGCCGGACGAGACCGTGGTCACGCC
CGAAGTGTACGCCAAGATTGTGAAACTGGCCGATCAGCTGCAGGAGAAAT
ATCCAGACGATGAAATCGACTGGCATTTGATCTTCGATTCGGGCAGCACC
ACCGATAATAATGGCTTGCCCCACCACATCAGCATCGCCGAAGAGTTGGA
AACGTACTTTGCAAACTTCAAGCGTTTCTTACAGCGCCTGCCAGTTCCTC
CAGTGGCCATTACAATGGCCCATTCCGCTCAAGATGACTACTGCCCCCAG
GATCAGGTGGCATTCATTGAGGAATGCGTTCTACGCCTGCTTAAGGAGGT
TTTTGGCGAAAGACTGCACGACAAAGCCATCCTGCACTATATGGACGATC
CTTGGGATGTGATGAAGCTCTAAGCTTATGGATAACTAGGGGTTCTTTCG
CCCGCCACTGCGAATTAGATTCTGAATTTACAAAACTCGTTTGGGCGGGA
AAACTCCACGACTAAAAGATACCCGTAGTGATTTCGAATTAGAACCTAAT
GATGGAAAATCCAATACTAATTATAATAATATTTTTTACTTTGAAATATA
CGCGAAGTATTTATTACAGAAAAAAAAAAAAAAAAAAA

LD22716.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
MESR6-RA 1880 MESR6-RA 141..1853 8..1720 8565 100 Plus
nc_13427.a 1742 nc_13427.a 170..737 1187..620 2840 100 Minus
nc_13427.a 1742 nc_13427.a 742..1249 553..46 2540 100 Minus
nc_13427.a 1742 nc_13427.a 1..169 1476..1308 845 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19083223..19084323 619..1719 5460 99.7 Plus
chr3L 24539361 chr3L 19082263..19082877 8..622 3075 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19093661..19094761 620..1720 5505 100 Plus
3L 28110227 3L 19092707..19093321 8..622 3075 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19086761..19087861 620..1720 5505 100 Plus
3L 28103327 3L 19085807..19086421 8..622 3075 100 Plus
Blast to na_te.dros performed 2019-03-16 00:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 306..393 1629..1717 118 65.2 Plus

LD22716.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:10 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19082255..19082530 1..275 99 == Plus
chr3L 19082607..19082876 352..621 100 -> Plus
chr3L 19083226..19084323 622..1719 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:07 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 1..1413 111..1523 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:47 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 1..1413 111..1523 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:53 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 1..1413 111..1523 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:26 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 1..1413 111..1523 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:11:51 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 1..1413 111..1523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:28:13 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 28..1747 1..1719 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:47 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 28..1747 1..1719 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:53 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 30..1749 1..1719 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:26 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 28..1747 1..1719 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:11:51 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
MESR6-RA 30..1749 1..1719 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:10 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19092699..19093320 1..621 99 -> Plus
3L 19093663..19094760 622..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:10 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19092699..19093320 1..621 99 -> Plus
3L 19093663..19094760 622..1719 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:10 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19092699..19093320 1..621 99 -> Plus
3L 19093663..19094760 622..1719 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:53 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19085799..19086420 1..621 99 -> Plus
arm_3L 19086763..19087860 622..1719 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:41 Download gff for LD22716.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19085799..19086420 1..621 99 -> Plus
3L 19086763..19087860 622..1719 100   Plus

LD22716.hyp Sequence

Translation from 110 to 1522

> LD22716.hyp
MESDTLDQESAAAALKKLSPSESPESSKKWEPTSGEWVAAGGGEEAPPTK
RQKTADEKEENREEDEDSEESVDEEEDDGEGIVQIGGTISPRHFQRIPVF
IVDYHNDVLEFIYRCFATRHLPLQNNTLVHFDSHPDLVIPRHIAASSTYQ
KETMLNELSIENWIMPTLYAGHFNRVVWLKNSWCQQLPTGRHDFKVGQKD
DRIGVDCPLDYFIADGNYCTTEDLQDAKSVELQVHDADNESLNPNEFLTE
KDAKGFVLDIDLDFFSTSNPFLEIYKDADCYNQLKEIFHFESVEKVKKSG
TATIADYLATAERRQTQLDALKTIFWHLEEERNFEGLEKPDETVVTPEVY
AKIVKLADQLQEKYPDDEIDWHLIFDSGSTTDNNGLPHHISIAEELETYF
ANFKRFLQRLPVPPVAITMAHSAQDDYCPQDQVAFIEECVLRLLKEVFGE
RLHDKAILHYMDDPWDVMKL*

LD22716.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
MESR6-PA 470 CG6818-PA 1..470 1..470 2508 100 Plus
MESR6-PB 484 CG6818-PB 1..484 1..470 2483 97.1 Plus

LD22716.pep Sequence

Translation from 110 to 1522

> LD22716.pep
MESDTLDQESAAAALKKLSPSESPESSKKWEPTSGEWVAAGGGEEAPPTK
RQKTADEKEENREEDEDSEESVDEEEDDGEGIVQIGGTISPRHFQRIPVF
IVDYHNDVLEFIYRCFATRHLPLQNNTLVHFDSHPDLVIPRHIAASSTYQ
KETMLNELSIENWIMPTLYAGHFNRVVWLKNSWCQQLPTGRHDFKVGQKD
DRIGVDCPLDYFIADGNYCTTEDLQDAKSVELQVHDADNESLNPNEFLTE
KDAKGFVLDIDLDFFSTSNPFLEIYKDADCYNQLKEIFHFESVEKVKKSG
TATIADYLATAERRQTQLDALKTIFWHLEEERNFEGLEKPDETVVTPEVY
AKIVKLADQLQEKYPDDEIDWHLIFDSGSTTDNNGLPHHISIAEELETYF
ANFKRFLQRLPVPPVAITMAHSAQDDYCPQDQVAFIEECVLRLLKEVFGE
RLHDKAILHYMDDPWDVMKL*

LD22716.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23659-PA 489 GF23659-PA 1..489 1..470 1930 76.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16021-PA 478 GG16021-PA 1..478 1..470 2400 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14611-PA 486 GH14611-PA 106..486 90..470 1700 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
MESR6-PA 470 CG6818-PA 1..470 1..470 2508 100 Plus
MESR6-PB 484 CG6818-PB 1..484 1..470 2483 97.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13498-PA 465 GI13498-PA 1..465 1..470 1813 71.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21916-PA 490 GL21916-PA 1..490 1..470 1891 72 Plus
Dper\GL15111-PA 51 GL15111-PA 1..51 255..305 174 68.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19883-PA 490 GA19883-PA 1..490 1..470 1884 72.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15010-PA 470 GM15010-PA 1..470 1..470 2477 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14787-PA 470 GD14787-PA 1..470 1..470 2496 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11860-PA 470 GJ11860-PA 1..470 1..470 1791 72 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10408-PA 476 GK10408-PA 1..476 1..470 1700 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19586-PA 483 GE19586-PA 1..483 1..470 2183 91.1 Plus
Dyak\GE19585-PA 332 GE19585-PA 1..310 1..297 1278 88.1 Plus