Clone LD22754 Report

Search the DGRC for LD22754

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:227
Well:54
Vector:pOT2
Associated Gene/Transcriptnoi-RA
Protein status:LD22754.pep: gold
Preliminary Size:1637
Sequenced Size:1857

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2925 2001-01-01 Release 2 assignment
CG2925 2001-07-04 Blastp of sequenced clone
CG2925 2003-01-01 Sim4 clustering to Release 3
noi 2008-04-29 Release 5.5 accounting
noi 2008-08-15 Release 5.9 accounting
noi 2008-12-18 5.12 accounting

Clone Sequence Records

LD22754.complete Sequence

1857 bp (1857 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051676

> LD22754.complete
TTTTAATGTACACACGCTGACGAAAAGTTGTGTTTTCTTCGGGATTTCGC
TAAGTGAAAGGCCTCCATTTGATATTTCCCCGCATTAAATCCTCGCATTC
AAGAGCCATGGAGACGCTCCTGGAGCAACAGCGGCGCCTACACGAGGAGC
GCGAGCGCCTGGTCAAACTGATGGTGGACGAGCATGCGACCAAAAAGCCG
GGCGAAAAGGAGCGCATCCATTCGGAGCACCGGCTTAAATACCTCATGGA
ACTGCATCACAACTCTACGTCCCAGCTACGCGATCTCTACGAGGACAAGG
ACAATGAACGAAAGGCGGAGATTGCCGCTCTTTCGGGGCCCAACGAGTTC
AATGAGTTCTACGCCCGCCTCAAGCAAATCAAGCAGTTCTACAAGTCCCA
TCCGGCGGAGGTCAGCGTGCCGCTGTCCGTCGAGTTCGACGAGATGATTC
GGGTGTACAACAATCCGGACGACATGAGTGCCCTAGTGGAGTTCACTGAC
GAGGAGGGCGGCGGTCGCTATCTGGACCTCAACGAGTGCTACGAGCTGTA
CCTCAACTTGCGGTCGGTGGAGAAACTGGACTATATCACTTACCTTATGT
CCTTTGACCACGTCTTCGATATTCCGAGAGAGCGCAAGAACCGCGAGTAC
CGCATATACATAGAGACCCTCAACGACTACCTGCACCACTTCATCCTCCG
AATCCAGCCCTTGCTCGACCTGGAGGGCGAACTGCTAAAGGTGGAACTTG
ACTTCCAGCGCCAGTGGCTGATGGGCACATTTCCGGGTTTTTCGATTAAG
GAAACTGAGTCGGCGTTGGCCAACACCGGCGCCCACCTTGATCTATCCGC
CTTCTCCAGCTGGGAGGAGCTGGCCTCGCTAGGACTGGATCGTCTAAAGT
CGGCTTTGGTGGCTCTGGGTCTTAAGTGCGGCGGCACCCTGGAGGAGCGA
GCACAGCGTTTATTCTCTACAAAAGGTAAAAGCACCTTGGATCCCGCACT
GATGGCCAAGAAGCCCAGCGCAAAGACTGCTAGTGCCCAGTCACGGGAGC
ACGAACGCCACAAGGAGATTGCCCAGCTAGAGGCTCTGCTCTACAAATAC
GCGGATCTGTTGTCTGAGCAGAGAGCGGCTACCAAGGAGAATGTGCAGAG
AAAACAGGCTCGGACTGGTGGCGAGCGGGACGATAGCGATGTGGAGGCCA
GCGAGTCGGACAACGAAGATGATCCCGACGCGGACGACGTTCCGTACAAT
CCCAAGAACTTGCCGCTCGGATGGGACGGTAAACCTATCCCCTACTGGTT
GTATAAACTGCATGGCCTGAATATTAGCTATAATTGCGAGATATGTGGAA
ACTTCACCTACAAGGGTCCTAAGGCTTTTCAACGACACTTCGCCGAGTGG
CGGCATGCGCACGGCATGCGATGCCTCGGCATTCCGAACACCGCCCATTT
CGCCAATGTCACCCAGATCGAGGACGCAATCACGTTGTGGGAAAAACTCA
AGTCGCAAAAGCAGAGCGAGCGCTGGGTAGCCGATCAGGAGGAAGAGTTC
GAGGACTCGCTGGGAAACGTTGTCAACCGAAAGACGTTCGAGGATCTAAA
ACGCCAGGGTCTACTTTAGAGGACAAGCCTACGATTATGGTCGCTTGAGT
ACCGGTCAATTCTATATGACGCTTCCTCTAAAACCTCAACAGTCTTTATA
ATTCAAAACGGAATGACACTAAAATTGGTTTTATTTAAGGAATCTAATGT
TAAGCCATAAAACCATTGGGCGTCCTTTTATTCATTAAAGAAAGACCATG
GATCAGCCAACGATTCATGATTAGAATCAATTGTAGTTTAAAAAAAAAAA
AAAAAAA

LD22754.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
noi-RA 1864 noi-RA 20..1862 1..1843 9215 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1415260..1417098 1839..1 9195 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5589593..5591439 1847..1 9220 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5330424..5332270 1847..1 9220 99.9 Minus
Blast to na_te.dros performed on 2019-03-16 00:43:27 has no hits.

LD22754.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:19 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1415260..1417098 1..1839 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:09 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 1..1512 108..1619 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:28 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 1..1512 108..1619 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:59 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 1..1512 108..1619 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:07 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 1..1512 108..1619 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:12:15 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 1..1512 108..1619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:46 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 20..1858 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:28 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 20..1858 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:59 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 21..1859 1..1839 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:08 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 20..1858 1..1839 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:12:15 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
noi-RA 21..1859 1..1839 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:19 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5589601..5591439 1..1839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:19 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5589601..5591439 1..1839 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:19 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5589601..5591439 1..1839 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:59 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1415323..1417161 1..1839 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:51 Download gff for LD22754.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5330432..5332270 1..1839 100   Minus

LD22754.hyp Sequence

Translation from 107 to 1618

> LD22754.hyp
METLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELH
HNSTSQLRDLYEDKDNERKAEIAALSGPNEFNEFYARLKQIKQFYKSHPA
EVSVPLSVEFDEMIRVYNNPDDMSALVEFTDEEGGGRYLDLNECYELYLN
LRSVEKLDYITYLMSFDHVFDIPRERKNREYRIYIETLNDYLHHFILRIQ
PLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESALANTGAHLDLSAFS
SWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGKSTLDPALMA
KKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQ
ARTGGERDDSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYK
LHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFAN
VTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQ
GLL*

LD22754.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
noi-PA 503 CG2925-PA 1..503 1..503 2643 100 Plus

LD22754.pep Sequence

Translation from 107 to 1618

> LD22754.pep
METLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELH
HNSTSQLRDLYEDKDNERKAEIAALSGPNEFNEFYARLKQIKQFYKSHPA
EVSVPLSVEFDEMIRVYNNPDDMSALVEFTDEEGGGRYLDLNECYELYLN
LRSVEKLDYITYLMSFDHVFDIPRERKNREYRIYIETLNDYLHHFILRIQ
PLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESALANTGAHLDLSAFS
SWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGKSTLDPALMA
KKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQ
ARTGGERDDSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYK
LHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFAN
VTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQ
GLL*

LD22754.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20764-PA 503 GF20764-PA 1..503 1..503 2625 96.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10938-PA 503 GG10938-PA 1..503 1..503 2662 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17377-PA 503 GH17377-PA 1..503 1..503 2512 94.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
noi-PA 503 CG2925-PA 1..503 1..503 2643 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23921-PA 503 GI23921-PA 1..503 1..503 2476 92.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21522-PA 503 GL21522-PA 1..503 1..503 2507 94 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15523-PA 503 GA15523-PA 1..503 1..503 2507 94 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10615-PA 503 GM10615-PA 1..503 1..503 2682 99.4 Plus
Dsec\GM15455-PA 186 GM15455-PA 1..186 318..503 1013 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19603-PA 503 GD19603-PA 1..503 1..503 2687 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24013-PA 503 GJ24013-PA 1..503 1..503 2504 94.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22655-PA 504 GK22655-PA 1..504 1..503 2506 93.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24160-PA 503 GE24160-PA 1..503 1..503 2655 98.4 Plus