Clone LD22812 Report

Search the DGRC for LD22812

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:228
Well:12
Vector:pOT2
Associated Gene/Transcriptscyl-RB
Protein status:LD22812.pep: validated not full length
Preliminary Size:2794
Sequenced Size:2590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7590 2001-01-01 Release 2 assignment
CG7590 2002-01-03 Blastp of sequenced clone
scyl 2008-04-29 Release 5.5 accounting
scyl 2008-08-15 Release 5.9 accounting
scyl 2008-12-18 5.12 accounting

Clone Sequence Records

LD22812.complete Sequence

2590 bp (2590 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075382

> LD22812.complete
AAACACTGAACACAGTACACAAGAAAACAGACTCTCGCAGCCAGAAAATC
AAATGAAGCAGCAGCAGCAAAAACGTGCATAGCCAGACTTTTTCCACTGC
TAAAATTTTACAAATCCAAAAAGTTCAATCATTCAACACTGTTTCACGAA
GAATTCTATGCTACTGACGTTATATTTTTAAACTAAACTAAACATTTAAA
TTTGCCATCAAACAAATGCAACGGACCAACGCCATTTAAGTGATACAACA
AAACAAATAAAAGTTTAAACAACATAAGTGCTGTGATTTCCACTACAAAA
CAACAACCAACCAACCAACCAACCAACCAACAACAACAACAACAAATGTT
AATTTAAACTGCAACCAGAACGTAAAGAGGAAGAATTTAAGCAATCAGCA
AGAAAACAAACAGCAAATTGTGATAAATTAAATAAGCTTAATTAAATTGT
AAAAGTGATATACAAAGAAGGCGACAAAAGCCGTCGGAAAATTGCGAGCG
AGCGAGCGAACGAACGACTTTCGATTCGATTCGACTTTCCAAGCCAACAA
AACACAGAAAAACCGATGAAAATGGATGTTATTGCTCGGGAACAAATCAT
CTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGGTAAGTGTACCGAAA
ATTCGGAGAGAAATTTGTGTCTATAGGGAAGAATCGGGAAAGTTCCAGAA
AGATTTTAAAACTTAAAATAAAACATGTGTTTCCCAAAATGCAGTCTACT
TTTATCAAATTTGTGTATAAAGCGTACATATTTTTAAATGTTTTTTGAAT
ACTTAAACTGTTCTTGAACTTGTGTATAATTTAAATAAAAAAAAAGATGA
ACAACAACTGCTGTACAAAGCTCCTTGAAATTTCATCAGCAATTAACTTT
GTAATTTACATTTACACAAAAAAATGCATAAAAAATCAATTTGCAATTAC
AAAAAGGAAAAATGTCATAAAAAATCATGTTAAATTGTTCGTCACGTACG
CAAATTGCAGCAACAACAAAAAACTCCCAGCAGCAATAAAAAAATGATTT
TTCGTTTTCTTTTCGTCTCTCTGGCCCTCCGTCTTTTTTAACGTTGCTTT
TGCCTCTGCTTCACGTTTGCGTGCTGCGCTTTGAACTCTCGTTCGCTGTT
GCCAAGCGGCTGTTTCCTCATTGCCTAGTTGTTTGTTTTTGGCTTCCGTT
GCGTTATTCCTAATTTTTGCCAGATGTAGCAATAGAATTTAAGAGGTGTT
TTAAGATTGACTAGTAACATTCGTCACTACATTTTTACACTCTATGAAAC
TTAATAGTATTCTACCTCGTTTTATTACCAAAACCTTTTACTAATCAATC
GTTTTTCCTCCTTTTCAATCATTCCAGATTGGACCAGCAGACTGCCACCG
CCGTCGGCATACACTCTGGACCTGATGTCCAAGAAGGCCAAGACGACAAC
CGGGGGCAGCAGCAATGGCAGCAATGCTACCGCCACATCCACAACCACAT
CCACATCCAGCAGTATTAAGCACAAGCAGCCGGCGGGCAGCAGCAACAAC
AATGTTGGCCAAAGTCAGAGCAAGAAGACAAAGCCCAGCGGCAGCTATAA
TAGCAATAGCAACTACTACTACTACGCTGCTGACGAGGAGGAGGGCGGTA
GCGCTGACTATGCACTGAGCAACTACGATAAGAAGGCTGTCGAGGAGCTG
TCCCTGCGATTGCTCGACGAACTGAGGGCGGCCAAGTCGCGTCATTTGAC
CTGTACGGAAGTGTCGCTACCCTGTGATCTCACGCCGAGCGTGGCCCGGG
AAATAATCCGCGTGTCGGAGAAGGAGCCCCGCGGCATACGCGGCTGCACC
ATCTACATTGAGTTCGAGGATGAGCCGAAGAATTCGCGTCGCATTGCCTC
GATCAAGGTCGATTCGGATACGGTGTCCACATTCGAAGTGTATCTGACCC
TCAGGCAGGATCATCGCGGCTGGACGTCGCTGTTGCCGCAGTTCATGAAG
AGTTTGGCCCGCACGATCACCATCAGTCCGGAGTATACGATCACCAAGAA
TAAGCTATATTCCGCTGATGGTTTGGGTGCACGCAGGAGCTATAGCTTCG
GCAGCCACGCCCATAGACCCAGTGCGGCCATCGCCACGCCCACCAACTAA
TGGTGATCAGCTTGATCTGTCAGATATGCATATGTTCGTATATGTGTCTG
CGCGAAACAAAAAAAACACCACCCCTGTGATGATCGAGAGCAGTAGTTTG
TTGCAGTTTGAAGTGCAACAACGAAGCAAGTATTCGAAGCCACCCCACCT
ACACCACACACACACACACACAAACACCTTTAATACACACATACATACAC
ACAAACACACACACACACACACACATACACATTAGGTTACGCCAACCACA
CTCTCATACTAATACTATATATGGGACCGTAAGGCCCGATTTTTGTAATT
GTGACTCTCACCACCATTTTACTTAGATGCGTAGTGCTATAACAAATAAC
TAGAGTTTTAAGTTGTTTCTCCTTTTTCAAAAACGCAAAAGCAAGAAAAA
CAAAACAAGGCGACAAGAGCGGAAAAAAAAAAAAAAAAAA

LD22812.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:13
Subject Length Description Subject Range Query Range Score Percent Strand
scyl-RB 3213 scyl-RB 18..2607 1..2590 12890 99.8 Plus
scyl-RA 2615 scyl-RA 711..1925 1376..2590 6015 99.6 Plus
scyl.a 3266 scyl.a 711..1925 1376..2590 6015 99.6 Plus
scyl-RA 2615 scyl-RA 78..712 1..635 3175 100 Plus
scyl.a 3266 scyl.a 78..712 1..635 3175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11243186..11245755 1..2572 12650 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11252326..11254915 1..2590 12890 99.8 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11245426..11248015 1..2590 12890 99.8 Plus
Blast to na_te.dros performed 2019-03-16 19:27:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2472 1455..1625 207 61 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2388..2540 1457..1621 184 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2291..2448 1467..1625 179 61.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6905 1456..1616 174 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6913 1456..1632 169 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6868 1472..1625 143 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6757..6845 1537..1622 131 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6736..6809 1537..1613 126 64.9 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6489..6597 804..699 124 58.7 Minus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 2317..2408 125..213 119 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2314..2409 1519..1616 116 59.2 Plus

LD22812.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:28:04 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11243186..11245485 1..2300 97 == Plus
chr3L 11245565..11245755 2382..2572 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:15 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 69..843 1376..2150 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:27 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 69..843 1376..2150 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 69..843 1376..2150 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:18 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 69..843 1376..2150 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:18 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 69..843 1376..2150 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:40 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RB 18..2589 1..2572 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:27 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 650..1846 1376..2572 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 653..1849 1376..2572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:19 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RB 18..2589 1..2572 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:18 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
scyl-RA 653..1849 1376..2572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:28:04 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11252326..11254897 1..2572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:28:04 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11252326..11254897 1..2572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:28:04 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11252326..11254897 1..2572 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:11 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11245426..11247997 1..2572 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:01 Download gff for LD22812.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11245426..11247997 1..2572 100   Plus

LD22812.pep Sequence

Translation from 1424 to 2149

> LD22812.pep
MSKKAKTTTGGSSNGSNATATSTTTSTSSSIKHKQPAGSSNNNVGQSQSK
KTKPSGSYNSNSNYYYYAADEEEGGSADYALSNYDKKAVEELSLRLLDEL
RAAKSRHLTCTEVSLPCDLTPSVAREIIRVSEKEPRGIRGCTIYIEFEDE
PKNSRRIASIKVDSDTVSTFEVYLTLRQDHRGWTSLLPQFMKSLARTITI
SPEYTITKNKLYSADGLGARRSYSFGSHAHRPSAAIATPTN*

LD22812.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25255-PA 274 GF25255-PA 38..274 1..241 865 73.6 Plus
Dana\GF25267-PA 305 GF25267-PA 169..305 81..215 470 65 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15494-PA 276 GG15494-PA 38..276 1..241 1044 94.6 Plus
Dere\GG15507-PA 299 GG15507-PA 158..299 75..215 447 60.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16643-PA 280 GH16643-PA 64..279 30..240 635 65.5 Plus
Dgri\GH16655-PA 273 GH16655-PA 133..273 80..215 455 63.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
scyl-PC 280 CG7590-PC 40..280 1..241 1230 100 Plus
scyl-PA 280 CG7590-PA 40..280 1..241 1230 100 Plus
chrb-PE 233 CG7533-PE 26..233 10..215 419 45.6 Plus
chrb-PC 299 CG7533-PC 92..299 10..215 419 45.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11599-PA 273 GI11599-PA 109..246 82..219 619 82.6 Plus
Dmoj\GI11614-PA 304 GI11614-PA 159..297 80..213 441 61.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22775-PA 260 GL22775-PA 47..259 8..240 728 66.1 Plus
Dper\GL22796-PA 289 GL22796-PA 148..289 75..215 465 61.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20462-PA 260 GA20462-PA 47..259 8..240 728 66.1 Plus
Dpse\GA20420-PA 289 GA20420-PA 148..289 75..215 465 61.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25265-PA 278 GM25265-PA 38..278 1..241 1241 98.3 Plus
Dsec\GM25275-PA 299 GM25275-PA 158..299 75..215 445 60.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14299-PA 481 GD14299-PA 38..211 1..174 888 98.3 Plus
Dsim\GD14310-PA 299 GD14310-PA 158..299 75..215 445 60.1 Plus
Dsim\GD14372-PA 51 GD14372-PA 1..51 191..241 257 98 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11278-PA 284 GJ11278-PA 111..283 69..240 650 76.3 Plus
Dvir\GJ11294-PA 295 GJ11294-PA 125..288 43..213 464 54.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17162-PA 268 GK17162-PA 100..253 70..227 705 84.8 Plus
Dwil\GK17172-PA 323 GK17172-PA 182..323 75..215 480 65.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21804-PA 291 GE21804-PA 38..291 1..241 1037 89.8 Plus
Dyak\GE21815-PA 299 GE21815-PA 158..299 75..215 444 60.1 Plus

LD22812.hyp Sequence

Translation from 1424 to 2149

> LD22812.hyp
MSKKAKTTTGGSSNGSNATATSTTTSTSSSIKHKQPAGSSNNNVGQSQSK
KTKPSGSYNSNSNYYYYAADEEEGGSADYALSNYDKKAVEELSLRLLDEL
RAAKSRHLTCTEVSLPCDLTPSVAREIIRVSEKEPRGIRGCTIYIEFEDE
PKNSRRIASIKVDSDTVSTFEVYLTLRQDHRGWTSLLPQFMKSLARTITI
SPEYTITKNKLYSADGLGARRSYSFGSHAHRPSAAIATPTN*

LD22812.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
scyl-PC 280 CG7590-PC 40..280 1..241 1230 100 Plus
scyl-PA 280 CG7590-PA 40..280 1..241 1230 100 Plus
chrb-PE 233 CG7533-PE 26..233 10..215 419 45.6 Plus
chrb-PC 299 CG7533-PC 92..299 10..215 419 45.6 Plus