Clone LD22815 Report

Search the DGRC for LD22815

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:228
Well:15
Vector:pOT2
Associated Gene/TranscriptCG44243-RA
Protein status:LD22815.pep: gold
Preliminary Size:2148
Sequenced Size:1653

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8446 2002-03-19 Blastp of sequenced clone
CG8446 2003-01-01 Sim4 clustering to Release 3
CG8446 2008-04-29 Release 5.5 accounting
CG8446 2008-08-15 Release 5.9 accounting
CG8446 2008-12-18 5.12 accounting

Clone Sequence Records

LD22815.complete Sequence

1653 bp (1653 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094796

> LD22815.complete
TTTAAAGACCAAAACGAATAGCGTAGATAGTAGACCATACATAACCTAAA
GAAGAGCACACACGGACCACACAGAACCAGGCAGACGACAACCGTAGAAA
CCAACCAACCAACCAACCAATCAACCAGCCAAAAGCTTTTTTCGACACCA
TTGACCTTGTTTCGCTTGCAAGTGCATTGTGTCCCAGATCACCTGGCAAC
AGAAATCACACACACCCGTACGCCCCACTTCCTTGTGTAAGCCATGAGCA
TGCTGTTGCGACGCAATTCCAGCCAGCTGCGGCTACTTCTCTCCTCCGCC
GCTCAGGCCACGCGCCTGGCATCCAGCGGAGTGGAGCCACCATCTGCTGG
ACAGCAGGAGATTAAAAAGCAGAGGCGCCAGCCACCGCCCGTGGTTCCCG
ATTCGGAGATCAAGAAGTCCGTGTTCATCTCGCAGTCCAGCGATGTGTTC
ACCAACCTCGCTCTAGAGGATTGGCTGTACAAAAACTTTGATTTCAGCCG
CCACCATGTGCTGCTGCTGTGGGCCAACGACCCGTGCGTAGTCATTGGTC
GCCACCAGAATCCCTTCACCGAGGCTAATGTTTCGCAGCTGGTGGAACGC
GGCATAACACTTGCACGCCGCAATAGTGGCGGTGGAGCGGTGTACCATGA
TCTTGGGAACCTCAACTGCACCTTTTTCTCGCCCAGAGAGCGCTACGATC
GCAAGTACAACCTGAACATCGTGACCAGGGCCTTGTTCCGCGAATGGGCC
ATCAAGGCAGAGATAAATGAGCGCGACGACATTGTAGTGATGAATAAGAA
GATTTCCGGCACTGCGGCCAAGCTGGGACACCCGAACTCGTACCATCACT
GCACCATTTTGGCCAGCGCCAACAAATTGCACTTGGGCGAATCTCTGGTG
CGGGAGCCGGCCAATTATATTAGCAAGGCCACGGCTTCGGTGCCGTCGCC
CATTCGCAACCTGGTTGATGTCAATCGCACGGTGAACGTTGCTCAGCTGC
GTTCCGCCGTGGGTTACGAGTATTTGAGAACGGCTGCAACTACGCTTGAA
GACGGCGGCAGCACACAGACGATGCAGCAGCGCGGCTTTCAGCTGGTCAA
TCCCACAGAGAAATGGTTCCCCGGCATTGAGGAATTGCGCTCCAACTACA
GCTCTTGGGACTGGGTCATCGGCAAGACTCCCAAGTTCACCGTGCAGAAG
GAACTGGAGGTGAAGGGCGATGAGCAGGACATGAAACTGAAACTAAGCGT
GGAAGTGGAAGCGGGATTAATGAAGGAGATCGGCATCCAGCTGCCGCAGA
GCGATCAGCTCGTCCCGGTGGTGACTCCGCTCCAGGGCAAGCCCTACAAC
GAGGAGAACCTGAACGGAATACTTGGCGCCCTTAAGCTCGTCAGCGCATC
GAATGTGAAGCAGGCAATAAACGGATCAGCTTGATTACTGTTGTGCTAGC
TCGAAAAAATTAACAAAAAAATATATAATCCATTTCTAGAGCACTAACCA
CGCTAACGTAGTTATAATCTTTCCAAGAAACCATATTACTAACCTAGTAT
TTAAGCGGTTTACCAACAAACTATTTACTTTTGTTACCACGTTTTATATA
AAAGAACTGCATTAAATGTTTAAACATTGATTATTAAAAAAAAAAAAAAA
AAA

LD22815.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8446-RB 2343 CG8446-RB 532..2169 1..1638 8190 100 Plus
CG8446-RC 1159 CG8446-RC 183..1024 797..1638 4210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12084860..12085660 1..801 4005 100 Plus
chr2R 21145070 chr2R 12085805..12086269 800..1264 2325 100 Plus
chr2R 21145070 chr2R 12086328..12086700 1263..1635 1865 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16197538..16198338 1..801 4005 100 Plus
2R 25286936 2R 16198483..16198947 800..1264 2325 100 Plus
2R 25286936 2R 16199006..16199381 1263..1638 1880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16198737..16199537 1..801 4005 100 Plus
2R 25260384 2R 16199682..16200146 800..1264 2325 100 Plus
2R 25260384 2R 16200205..16200580 1263..1638 1880 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:31:57 has no hits.

LD22815.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:32:45 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12084860..12085660 1..801 95 -> Plus
chr2R 12085807..12086268 802..1263 100 -> Plus
chr2R 12086329..12086700 1264..1635 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:15 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1191 244..1434 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:28:51 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RF 1..1191 244..1434 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:02:30 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 1..1191 244..1434 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:08 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1191 244..1434 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:00 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 1..1191 244..1434 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:55:17 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1635 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:28:50 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 491..2125 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:02:30 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG44243-RA 497..2131 1..1635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:08 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG8446-RB 1..1635 1..1635 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:00 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
CG42837-RA 497..2131 1..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:32:45 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16197538..16198338 1..801 100 -> Plus
2R 16198485..16198946 802..1263 100 -> Plus
2R 16199007..16199378 1264..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:32:45 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16197538..16198338 1..801 100 -> Plus
2R 16198485..16198946 802..1263 100 -> Plus
2R 16199007..16199378 1264..1635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:32:45 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16197538..16198338 1..801 100 -> Plus
2R 16198485..16198946 802..1263 100 -> Plus
2R 16199007..16199378 1264..1635 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:02:30 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12085043..12085843 1..801 100 -> Plus
arm_2R 12085990..12086451 802..1263 100 -> Plus
arm_2R 12086512..12086883 1264..1635 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:36:35 Download gff for LD22815.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16199684..16200145 802..1263 100 -> Plus
2R 16198737..16199537 1..801 100 -> Plus
2R 16200206..16200577 1264..1635 100   Plus

LD22815.pep Sequence

Translation from 243 to 1433

> LD22815.pep
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSA*

LD22815.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12181-PA 400 GF12181-PA 1..399 1..395 1879 86.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20581-PA 398 GG20581-PA 1..398 1..396 2035 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22781-PA 408 GH22781-PA 65..407 53..395 1649 86.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-PB 396 CG44243-PB 1..396 1..396 2033 100 Plus
CG44243-PA 396 CG44243-PA 1..396 1..396 2033 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20577-PA 413 GI20577-PA 1..412 1..395 1656 75.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11408-PA 404 GL11408-PA 1..404 1..396 1811 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21085-PA 404 GA21085-PA 1..404 1..396 1820 83.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21672-PA 396 GM21672-PA 1..396 1..396 2099 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11173-PA 396 GD11173-PA 1..396 1..396 2104 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21426-PA 410 GJ21426-PA 1..409 1..395 1716 78.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17909-PA 414 GK17909-PA 1..413 1..395 1730 77.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11767-PA 398 GE11767-PA 1..398 1..396 2039 96 Plus

LD22815.hyp Sequence

Translation from 243 to 1433

> LD22815.hyp
MSMLLRRNSSQLRLLLSSAAQATRLASSGVEPPSAGQQEIKKQRRQPPPV
VPDSEIKKSVFISQSSDVFTNLALEDWLYKNFDFSRHHVLLLWANDPCVV
IGRHQNPFTEANVSQLVERGITLARRNSGGGAVYHDLGNLNCTFFSPRER
YDRKYNLNIVTRALFREWAIKAEINERDDIVVMNKKISGTAAKLGHPNSY
HHCTILASANKLHLGESLVREPANYISKATASVPSPIRNLVDVNRTVNVA
QLRSAVGYEYLRTAATTLEDGGSTQTMQQRGFQLVNPTEKWFPGIEELRS
NYSSWDWVIGKTPKFTVQKELEVKGDEQDMKLKLSVEVEAGLMKEIGIQL
PQSDQLVPVVTPLQGKPYNEENLNGILGALKLVSASNVKQAINGSA*

LD22815.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG44243-PB 396 CG44243-PB 1..396 1..396 2033 100 Plus
CG44243-PA 396 CG44243-PA 1..396 1..396 2033 100 Plus