Clone LD22825 Report

Search the DGRC for LD22825

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:228
Well:25
Vector:pOT2
Associated Gene/TranscriptKebab-RA
Protein status:LD22825.pep: gold
Preliminary Size:2200
Sequenced Size:2165

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4248 2001-01-01 Release 2 assignment
CG31672 2001-07-04 Blastp of sequenced clone
CG31672 2003-01-01 Sim4 clustering to Release 3
CG31672 2008-04-29 Release 5.5 accounting
CG31672 2008-08-15 Release 5.9 accounting
CG31672 2008-12-18 5.12 accounting

Clone Sequence Records

LD22825.complete Sequence

2165 bp (2165 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051677

> LD22825.complete
TCACTGGCTTGTTGTTATTGCTCAAATTTAAAAAGTGTAAATATCCTGAG
GAAAATTAAAAACACTTACATTAATTGCTTGAAAAATGAGTAGTATGGCT
AAATCGCCAGATATGCGAACTCCAGGGTGCTGCTCCCCCTTGCGTACAAA
GGAATTGCTGGAGAGACAAAGGTCCAGTAGGTGCACCCCCGCAAAAGGAT
ATCTAACCCCACGCAACTGCCAGAGCCCCAAACACCCAGAGATGCGGATA
CCTTCCATATTCGTTACCGATGCCGACTACGGCTTGGAGCGCCCGAAACA
ATTGCTACAGCGCCTGGAGCGATCACTATATCGATCTTCCTCTGCTTCCA
AAGTACCACCAAAACACTCATTGTTAGCTTCCCAGAACAGGCAGCGGACC
TGGGAAGGACCCAAAACACCAGAGTTCCGCCGTACCAACAAAACTATACC
CGCTTCGGAACCTCGTCCAAGACGTGCTAAGGAACTTCTGGAGGATCTTA
GGTCCAAGCATCAAGGAACTCCTGCCACGAAAATTCCGTCCCAGAGGAAT
CCAAAGGAAAACCAAGAACTTTCAAAGAGCCATACATGCATACCATCCTC
GGAGCCACAGCCTATCCGTCCAAAATTGATCCTCGAACGGGAGCGCCAGG
AGTCTATAACCAATCGCTTGGCATCAACTTCTATTGACCGCCTAAAAACA
AAGCCACCAAGGAGTAGCTTTACATCGAGCAGGCTTCTAGTGCCACAGAT
GGGATTTTCGTACCCCAAGGATCCGAAAAGGCTTCACGAATCCGACAAAG
GAATCAAGCTGACCACCTCAAAGCGAAAGTTGGACTTCAAAACTGAGCTG
GGGACTGACTGGCTGCGGCGGGAGCTGGAAAAGATTGGCAAGGAATGGCG
GAAAAAGACTGACTACCAGTTACGTCAGCTTATCTCGGGTTTTGTGAAAC
AACTAGTGCGCCTCCTACCCTTTAATGGGATAACATTTTCGCATCTTAGC
AGGGATTGCTATGTGCAGCAGATGGTGGAGGCACTGCAGCAGCTGCAGTA
CACCAAAAAGGTGAACAAAAGCTGGCTTCAAACGCCGAACAGCACACAAG
CCATCGCCCATGTGCTGGAATTACTCAATTTCTTGCTGGATGTCCTCGAA
CATCGAAAAGGAGAAGGCATGTGTGCGCTCCCCGTTGTTTCTGAAAAGCA
GAGAATTGAACAACTTGCATCGGCATCTGGTACATCCTATGATGTAATGA
GCCTGCAACAGAAGTTTGAAAACATAAAAATAGAGAAAGAAAGATTAAAC
AATTACCAAGAATCTCTGATGCCGGAATCCCCCGTATCCAAGGACATGGA
TAAAGTTACGGAGCGCGATGGGAATCAGGACTTCGTCAGACTCCTGGATT
TTCAAAAAGAGACCCTCCATGAACTCCAACTGCAACGCCTGCGTCTCCAG
GAGTTCTCCGAGCTCGTAAGCCTCGCCAAGATAAAATTAAAACGCTGTTG
TAAGGCTAACAAGCAATGCATCGAAGCCTTTAATGACCAAATACAAGACT
TGGCCGACTGTGTGGTTTTAAGAAACAGAAATATCGGCCTTCTAACCCAA
TTACATTTGAACGATAATCCAAAGGAGGAGGAGTTGCACGAACGTATGAA
GCAACTGCAGCGGCTGTATGAGGATAATTATTCAAATCTTCTACAGCTAA
ACATTAAGCCGCCCCAGGGAAGCCCTTAGGCGAACATAAGCCACATCCCT
CATTGAATGCCAGTTAATTTAAGCAAATATTTGCGTGTTGCATTTATTTA
ATTGAATTTATCAACTGAAAGTCTCGGCAACATCCTGGCCTGGATTTAAG
TTCGTGTAATTGACATTTAAATGAGTCATCGGCAGCCTGGCTACACTAAG
TCAATGGAAATAGCTGCAAAGTTAAGCAGCTTAGCTTTGATTTGCCAAAA
TATTTTAAATTGCACTACCATTTCATTGGTATATTTTGAGTTTTCCATTC
GTTATTTAAAGTTGCCATTATTGTCATACCAATGTATAGATTCCATATCA
AGCGGAATAAATAATACTTAAGGAGTCACTTTCATTTCGTAGCCAAATGG
ATTTTGTGAAATATTAACCATTAAAAAAAGTTGTATCAGTATAAAAAAAA
AAAAAAAAAAAAAAA

LD22825.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31672-RA 2196 CG31672-RA 17..2160 1..2144 10720 100 Plus
CG31672.b 2392 CG31672.b 251..2392 1..2142 10710 100 Plus
CG31672.a 2314 CG31672.a 130..2276 1..2144 10665 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2046126..2047339 578..1791 5995 99.6 Plus
chr2L 23010047 chr2L 2047404..2047748 1792..2136 1710 99.7 Plus
chr2L 23010047 chr2L 2045396..2045708 117..429 1520 99 Plus
chr2L 23010047 chr2L 2045765..2045915 429..579 710 98 Plus
chr2L 23010047 chr2L 2045222..2045338 1..117 510 95.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2047639 578..1791 6070 100 Plus
2L 23513712 2L 2047704..2048056 1792..2144 1765 100 Plus
2L 23513712 2L 2045699..2046011 117..429 1565 100 Plus
2L 23513712 2L 2046068..2046218 429..579 755 100 Plus
2L 23513712 2L 2045525..2045641 1..117 585 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2046426..2047639 578..1791 6070 100 Plus
2L 23513712 2L 2047704..2048056 1792..2144 1765 100 Plus
2L 23513712 2L 2045699..2046011 117..429 1565 100 Plus
2L 23513712 2L 2046068..2046218 429..579 755 100 Plus
2L 23513712 2L 2045525..2045641 1..117 585 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:24:54 has no hits.

LD22825.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:47 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2045222..2045338 1..117 95 -> Plus
chr2L 2045397..2045708 118..429 99 -> Plus
chr2L 2045763..2045915 430..579 96 -> Plus
chr2L 2046128..2047339 580..1791 99 -> Plus
chr2L 2047404..2047751 1792..2142 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:29 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..1644 86..1729 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:39 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 1..1644 86..1729 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:09 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..1644 86..1729 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:01:53 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 1..1644 86..1729 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:48 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..2142 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:29 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..2142 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:39 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 32..2173 1..2142 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:09 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
CG31672-RA 1..2142 1..2142 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:01:53 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
Kebab-RA 32..2173 1..2142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:47 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045525..2045641 1..117 100 -> Plus
2L 2045700..2046011 118..429 100 -> Plus
2L 2046069..2046218 430..579 100 -> Plus
2L 2046428..2047639 580..1791 100 -> Plus
2L 2047704..2048054 1792..2142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:47 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045525..2045641 1..117 100 -> Plus
2L 2045700..2046011 118..429 100 -> Plus
2L 2046069..2046218 430..579 100 -> Plus
2L 2046428..2047639 580..1791 100 -> Plus
2L 2047704..2048054 1792..2142 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:47 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045525..2045641 1..117 100 -> Plus
2L 2045700..2046011 118..429 100 -> Plus
2L 2046069..2046218 430..579 100 -> Plus
2L 2046428..2047639 580..1791 100 -> Plus
2L 2047704..2048054 1792..2142 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:39 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2046069..2046218 430..579 100 -> Plus
arm_2L 2047704..2048054 1792..2142 100   Plus
arm_2L 2045525..2045641 1..117 100 -> Plus
arm_2L 2045700..2046011 118..429 100 -> Plus
arm_2L 2046428..2047639 580..1791 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:52 Download gff for LD22825.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2045525..2045641 1..117 100 -> Plus
2L 2046069..2046218 430..579 100 -> Plus
2L 2045700..2046011 118..429 100 -> Plus
2L 2046428..2047639 580..1791 100 -> Plus
2L 2047704..2048054 1792..2142 100   Plus

LD22825.pep Sequence

Translation from 85 to 1728

> LD22825.pep
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATKI
PSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTSI
DRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKLD
FKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGIT
FSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNFL
LDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKIE
KERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQLQ
RLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRNI
GLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*

LD22825.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14598-PA 161 GF14598-PA 62..151 433..525 162 41.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24826-PA 538 GG24826-PA 1..538 4..547 2273 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-PA 547 CG31672-PA 1..547 1..547 2831 100 Plus
Kebab-PB 548 CG31672-PB 1..548 1..547 2819 99.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15313-PA 549 GL15313-PA 14..299 109..370 386 38.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26055-PA 549 GA26055-PA 14..299 109..370 372 38.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16850-PA 547 GM16850-PA 1..547 1..547 2685 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23129-PA 547 GD23129-PA 1..547 1..547 2711 94 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17911-PA 543 GE17911-PA 1..543 4..547 2402 84.7 Plus

LD22825.hyp Sequence

Translation from 85 to 1728

> LD22825.hyp
MSSMAKSPDMRTPGCCSPLRTKELLERQRSSRCTPAKGYLTPRNCQSPKH
PEMRIPSIFVTDADYGLERPKQLLQRLERSLYRSSSASKVPPKHSLLASQ
NRQRTWEGPKTPEFRRTNKTIPASEPRPRRAKELLEDLRSKHQGTPATKI
PSQRNPKENQELSKSHTCIPSSEPQPIRPKLILERERQESITNRLASTSI
DRLKTKPPRSSFTSSRLLVPQMGFSYPKDPKRLHESDKGIKLTTSKRKLD
FKTELGTDWLRRELEKIGKEWRKKTDYQLRQLISGFVKQLVRLLPFNGIT
FSHLSRDCYVQQMVEALQQLQYTKKVNKSWLQTPNSTQAIAHVLELLNFL
LDVLEHRKGEGMCALPVVSEKQRIEQLASASGTSYDVMSLQQKFENIKIE
KERLNNYQESLMPESPVSKDMDKVTERDGNQDFVRLLDFQKETLHELQLQ
RLRLQEFSELVSLAKIKLKRCCKANKQCIEAFNDQIQDLADCVVLRNRNI
GLLTQLHLNDNPKEEELHERMKQLQRLYEDNYSNLLQLNIKPPQGSP*

LD22825.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
Kebab-PA 547 CG31672-PA 1..547 1..547 2831 100 Plus
Kebab-PB 548 CG31672-PB 1..548 1..547 2819 99.8 Plus