Clone LD22866 Report

Search the DGRC for LD22866

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:228
Well:66
Vector:pOT2
Associated Gene/Transcriptric8a-RA
Protein status:LD22866.pep: gold
Preliminary Size:2200
Sequenced Size:2440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15797 2001-01-01 Release 2 assignment
CG15797 2003-01-01 Sim4 clustering to Release 3
CG15797 2003-02-22 Blastp of sequenced clone
ric8a 2008-04-29 Release 5.5 accounting
ric8a 2008-08-15 Release 5.9 accounting
ric8a 2008-12-18 5.12 accounting

Clone Sequence Records

LD22866.complete Sequence

2440 bp (2440 high quality bases) assembled on 2003-02-22

GenBank Submission: BT004873

> LD22866.complete
GCAAAGGTGCGGTCACACTGGCGGAAATTATAAAAATTAATTAAATTAAC
TTAAACGACCTAAAAAGCGAACTCAACGACAGCTTTGAACGGCCACCGTT
GGCGACATGGAAACGGAGCACCTGAAACGACTAGAGGCCAAGGAGGCGGA
CCACATTCCCGCCATCCTGGACGAATTCAACACAAAGAATGCGGATCTGC
TGGTCTTCGACAGTTTCCGCACAGACAACCTGTGGCACGAACTGTGGCTG
GCCATCTTCGGCATATTGGACGACCAGCGGCTTAGTCATCTGCATACGCA
GTGCCTGAACACGGTGAGGATTCTAACGCGTGACGAGTTCAGCCTGCAGA
CGAACTACATCGAACAGGAGGTTAACACCCTGCTGAAGCTGGCTAGGATT
GAGGCCGGCTCACTAAAGCTGCCAGCCACGCCGGACGAGCTTAAACAGGA
GGAACGCGAGGAGCCCCAGCTGGAGCCCAGCCAGGCCCAATCGGAGGTGA
TTGCCGAAGCACTTAAGTGTCTGTGCAACTTGGTCTACCAGAGCTCCGAC
TGCAGGCGCCAGTGCCTGCGGCAACACTGCCTGGATGCAATCCTGAAGAG
GGTGGCGTCCTCGATGCGACATCCCTGTGCGTTGGAGTACTACGACATGA
AGCTCCTCTTCTTGCTCACTGCATTAGAGCCAGCGGCGCGCTCTCGCCTC
CAAATCGATCTGAATGGCCTCACCTACATGACTAAGTGGCTGGACGACAA
GCTGGGCGAAGACTCAGTTGGCGAGGAGCAGCTGAACATCATCTGCGAAC
TGCTCAAGGTGATGTTCAACGTGACCAGTGCTCCGGACAAGAGCCCCAAC
GAATACGAAATCCAGAGCTTGCATTTGACGGGAGTGCTGAGGGAGCTACT
CCTGCGTTTCGGCGACTTGGCCACAGAAAAGGATCGCGCCGTCGTCACAC
ACGCCATCAATCTGCTGACAAACATCTCCGGCAGCTGCCTGACAGAACTC
ACCCTGCGTTGCTCCAATGCCGAGTTGGAGTCGCACAAGGAAAGAGAGCA
GGACAACGAGAAGGAAAAAGATACAGAAGCTGGAGCGGGAGCCAAACCCC
GTGAGTGCTGCTCGCAGTGCTTCGAAAAGCGCAATGTTCGGAGTCTGGAC
GTGCTACTCCGCTACCTAAGGCAATCTCTGGCCCAACAGGAGGCCGAGGC
TAGCTCGCATGAGTTGCTTTCCCCAGTGCTGACCGTGCTGGTGAAATGTG
CGCGCAGCGATCGAGTTATGCGTCACTATCTACGCCAGGAGATTCTGCCG
CCGCTGCGGGACGTTAGTCAACGACCTGAGGTTGGTCAGGAGCTGCGCAA
TCATCTGTGTCGGTTCCTTACACTGCCCGCGATGATCCTACGAGATCTGT
CCGCCGAACTGCTGTTCGTACTGTGCAAAGAAAATGTCGGCAGGATGATC
AAATATACGGGCTATGGCAACGCAGCCGGGCTCTTTGCCAAGCGGGGTAT
ACTCGACTGCCGGCGAGTGGAGGGCACCGACTACTCCTCCGACAGCGAGG
ACAGCGACACCGAGGAGTACAAGCAGCAGCAGCAGGGCATCAATCCAGTC
CTTGGCTGCGTAGAGCCGCGCAGCAAGTCGCATCTGGACGACATAAGCGA
AGAGCAGAAGGAATACGAGGCTATGCAGCTGGTCAATCTCATCGAACAGC
TGCGTCAGGGCGGGATCGTAAAGCCGGCGATGATAGACAAGGACGGGCGC
CCGCAGCCGCTGGAACACATCCTTCAGCTGCAGGAGGAGCTGCCGCAGCA
GCAGCTCGACCAGAAGCGGAAAACCTAAGCCACAAATGTATTGCGGGATC
TGCTATGGCACAACTTCCAAATAGCTACCAAAAAATCACCTTAAACTCTG
CATTTATTCCATAAGTTTACTGTCGAATGTAGCTTCGAATGTGTTCAAAA
AGCAGATTTTTTTTTTTACATAGTTTATATATTTTATACCACATATTCGA
GAACATCTCATTATAACCTACAATTTGTTAACCAAAAATTATCCAATCTG
GCTTTGATTTCAGTGATCAGCTTTTGTCTAAATGCCATTATTATTAGTGT
TAGCTAAAATAATTATAATCTATCCAATTAGCTTCAATTCGTAGATAAGT
TCGGTCTCCCAACTTTTACAGAATTTCTTTAACCATTAACCATGTAGAAC
GTTGTACTTATTAAGTTATTACGCACTTCGTTGTTATTTTGTTGTCCCGT
GAATTGTTCGCACTTTTAAAGTTGATACCATGGCATCCCATAACGTACGG
CTTGAAAAAAATAACTAAATGCAAAACAATCGTTGGGGTCTTCCAATTTC
AGGAAGTAGGGAGCAGATGAACATCAAATCTGAATTCATTTAAATACACG
CCCACACTATAGGACAAAAAAAAAAAAAAAAAAAAAAAAA

LD22866.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a.a 2918 ric8a.a 15..2431 1..2417 12085 100 Plus
ric8a-RA 2508 ric8a-RA 15..2431 1..2417 12085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9148264..9150492 186..2415 11100 100 Plus
chrX 22417052 chrX 9152576..9153057 893..1374 2335 99 Plus
chrX 22417052 chrX 9148014..9148200 1..187 935 100 Plus
chrX 22417052 chrX 9152474..9152584 695..805 465 94.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
ric8b-RA 654 CR15910-RA 76..557 893..1374 2335 98.9 Plus
ric8b-RA 654 CR15910-RA 19..84 740..805 285 95.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9256441..9258672 186..2417 11160 100 Plus
X 23542271 X 9260754..9261235 893..1374 2335 99 Plus
X 23542271 X 9256191..9256377 1..187 935 100 Plus
X 23542271 X 9260652..9260762 695..805 465 94.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9264539..9266770 186..2417 11160 100 Plus
X 23527363 X 9268852..9269333 893..1374 2335 98.9 Plus
X 23527363 X 9264289..9264475 1..187 935 100 Plus
X 23527363 X 9268750..9268860 695..805 465 94.5 Plus
Blast to na_te.dros performed 2019-03-16 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2396 1742..1835 123 61.5 Plus

LD22866.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9148266..9150492 188..2415 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:21 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 107..1828 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 107..1828 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:38 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 107..1828 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:20 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 107..1828 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:19 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..1722 107..1828 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 19:12:22 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8b-RA 72..557 887..1374 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:29 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..2415 1..2415 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 15..2429 1..2415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:38 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 24..2438 1..2415 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:21 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 1..2415 1..2415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:19 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
ric8a-RA 24..2438 1..2415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
X 9256191..9256377 1..187 100 -> Plus
X 9256443..9258670 188..2415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
X 9256191..9256377 1..187 100 -> Plus
X 9256443..9258670 188..2415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:56 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
X 9256191..9256377 1..187 100 -> Plus
X 9256443..9258670 188..2415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:38 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9150224..9150410 1..187 100 -> Plus
arm_X 9150476..9152703 188..2415 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:42 Download gff for LD22866.complete
Subject Subject Range Query Range Percent Splice Strand
X 9264541..9266768 188..2415 100   Plus
X 9264289..9264475 1..187 100 -> Plus

LD22866.hyp Sequence

Translation from 106 to 1827

> LD22866.hyp
METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWHELWLAI
FGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEA
GSLKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCR
RQCLRQHCLDAILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQI
DLNGLTYMTKWLDDKLGEDSVGEEQLNIICELLKVMFNVTSAPDKSPNEY
EIQSLHLTGVLRELLLRFGDLATEKDRAVVTHAINLLTNISGSCLTELTL
RCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVRSLDVL
LRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPL
RDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY
TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLG
CVEPRSKSHLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQ
PLEHILQLQEELPQQQLDQKRKT*

LD22866.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-PB 573 CG15797-PB 1..573 1..573 2948 100 Plus
ric8a-PA 573 CG15797-PA 1..573 1..573 2948 100 Plus

LD22866.pep Sequence

Translation from 106 to 1827

> LD22866.pep
METEHLKRLEAKEADHIPAILDEFNTKNADLLVFDSFRTDNLWHELWLAI
FGILDDQRLSHLHTQCLNTVRILTRDEFSLQTNYIEQEVNTLLKLARIEA
GSLKLPATPDELKQEEREEPQLEPSQAQSEVIAEALKCLCNLVYQSSDCR
RQCLRQHCLDAILKRVASSMRHPCALEYYDMKLLFLLTALEPAARSRLQI
DLNGLTYMTKWLDDKLGEDSVGEEQLNIICELLKVMFNVTSAPDKSPNEY
EIQSLHLTGVLRELLLRFGDLATEKDRAVVTHAINLLTNISGSCLTELTL
RCSNAELESHKEREQDNEKEKDTEAGAGAKPRECCSQCFEKRNVRSLDVL
LRYLRQSLAQQEAEASSHELLSPVLTVLVKCARSDRVMRHYLRQEILPPL
RDVSQRPEVGQELRNHLCRFLTLPAMILRDLSAELLFVLCKENVGRMIKY
TGYGNAAGLFAKRGILDCRRVEGTDYSSDSEDSDTEEYKQQQQGINPVLG
CVEPRSKSHLDDISEEQKEYEAMQLVNLIEQLRQGGIVKPAMIDKDGRPQ
PLEHILQLQEELPQQQLDQKRKT*

LD22866.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19073-PA 576 GF19073-PA 1..576 1..573 2544 90 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18307-PA 573 GG18307-PA 1..573 1..573 2993 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12796-PA 557 GH12796-PA 1..557 1..573 2147 74 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
ric8a-PB 573 CG15797-PB 1..573 1..573 2948 100 Plus
ric8a-PA 573 CG15797-PA 1..573 1..573 2948 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15241-PA 559 GI15241-PA 1..559 1..573 2119 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16497-PA 294 GL16497-PA 1..294 271..573 1148 81.6 Plus
Dper\GL16496-PA 240 GL16496-PA 1..235 1..232 814 69.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13961-PA 566 GA13961-PA 1..566 1..573 2372 84.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22447-PA 331 GM22447-PA 1..331 243..573 1736 99.7 Plus
Dsec\GM22436-PA 202 GM22436-PA 1..186 1..186 964 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16949-PA 573 GD16949-PA 1..573 1..573 2995 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18843-PA 560 GJ18843-PA 1..560 1..573 2103 74.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25114-PA 566 GK25114-PA 1..566 1..573 2338 83 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17786-PA 573 GE17786-PA 1..573 1..573 2966 97.9 Plus