Clone LD22902 Report

Search the DGRC for LD22902

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:229
Well:2
Vector:pOT2
Associated Gene/TranscriptMRG15-RA
Protein status:LD22902.pep: gold
Preliminary Size:1604
Sequenced Size:1495

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6363 2001-01-01 Release 2 assignment
CG6363 2001-07-04 Blastp of sequenced clone
CG6363 2003-01-01 Sim4 clustering to Release 3
MRG15 2008-04-29 Release 5.5 accounting
MRG15 2008-08-15 Release 5.9 accounting
MRG15 2008-12-18 5.12 accounting

Clone Sequence Records

LD22902.complete Sequence

1495 bp (1495 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051679

> LD22902.complete
CGTCACGCACGGTCACTCTAGGATTTGTTAATTATCTATTATTGAAAATA
AAATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACTATAGCACGGGGACC
GATGCAAACACTCTGTTCGTGGATGGGGAACGGGTTCTGTGCTTCCACGG
ACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAAACCCGATGCGACGC
CGGTTGAGTACTACATCCACTACGCGGGCTGGAGTAAAAACTGGGACGAG
TGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGATGACAACGTCAAGCG
ACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTCCAAGAAGGATAATA
AGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGATGCGGAACGAATCT
CGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCGCAATCGACCGCTAG
CAGCACACCAACAACTAGCGCCGGACCGGGAAGCAAATCGGAAGCCGGGA
GCACTGGCACCACGACTACTAACAGCACCGCCAACTCTACAACCAGCCGG
GCCCACCGAAAGTCCACACAATCGACGCCATCCACAGCAAGACCTGGCAC
GCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGAGACCACTGAGGAAG
AGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCGAACAACGGCCTTCT
CTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCGCCCACTACCACTCC
ATCCACACCCACCACGGAGCCGGCACCGTGTGTGGAAAGCGAGGAGGCCT
ACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCGACGAGTTAAAGCAC
TATCTGACCGACGACTGGTATGCGGTGGTGCGGGAGCACAAACTGCTGGA
GCTGCCCGCCAAGGTTACCGTGCAGCAGATCTCTGAGCAGTATTTGGCGC
ACAAGAAGTCCGTGAAATCGACCAGTGCCAGCAAGGAGGTTGCCATAAAC
GATGTACTCGACGGAATTGTAGAGTACTTCAATGTAATGCTGGGCTCCCA
GTTGCTGTACAAATTCGAACGCACCCAGTACGCGGATGTGATGCAGAAGC
ATCCGGACACACCGTTGTCCGAGCTTTACGGATCTTTTCACCTGCTGCGT
CTGTTTGTCCGCCTTGGCTCAATGCTCAGCTACTCTGCGTTGGATCAGCA
GTCCATGCAGAACCTACTCACGCACGTGCAGGATTTCCTTAAATTCCTCG
TAAAGAACAGCTCAATATTTTTCAGCATGAGCAACTTTATCAACGTTGAT
CCCGAGTACGTGCGAAATGCACAGTAAGCAATAATCTTTTCTTGACTTGA
AGTAAATATTTCATCAAAACAGTTTGCAATAATTCGGTGGTTGCTCTCAA
TTTGCTCCCAAATTGTAAATTAAAACACAAGTAAAATGTTTTGTCATAAG
GTAATAAATGTCAGCACCTTGTAAAAAAAAAAAAAAAAAAAAAAA

LD22902.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
MRG15-RA 1544 MRG15-RA 73..1544 1..1472 7360 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11101070..11102187 1472..355 5590 100 Minus
chr3R 27901430 chr3R 11102590..11102715 126..1 630 100 Minus
chr3R 27901430 chr3R 11102243..11102359 357..241 585 100 Minus
chr3R 27901430 chr3R 11102416..11102531 240..125 580 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15276439..15277557 1473..355 5595 100 Minus
3R 32079331 3R 15277960..15278085 126..1 630 100 Minus
3R 32079331 3R 15277613..15277729 357..241 585 100 Minus
3R 32079331 3R 15277786..15277901 240..125 580 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15017270..15018388 1473..355 5595 100 Minus
3R 31820162 3R 15018791..15018916 126..1 630 100 Minus
3R 31820162 3R 15018444..15018560 357..241 585 100 Minus
3R 31820162 3R 15018617..15018732 240..125 580 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:25:20 has no hits.

LD22902.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:26:26 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11101070..11102185 357..1472 100 <- Minus
chr3R 11102244..11102359 241..356 100 <- Minus
chr3R 11102416..11102530 126..240 100 <- Minus
chr3R 11102591..11102715 1..125 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:23 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 1..1275 53..1327 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:18 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 1..1275 53..1327 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:17:22 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 1..1275 53..1327 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:57 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 1..1275 53..1327 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:31 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 1..1275 53..1327 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:32 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 25..1496 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:17 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 25..1496 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:17:22 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 25..1496 1..1472 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:57 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 25..1496 1..1472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:31 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
MRG15-RA 25..1496 1..1472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:26 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15276440..15277555 357..1472 100 <- Minus
3R 15277614..15277729 241..356 100 <- Minus
3R 15277786..15277900 126..240 100 <- Minus
3R 15277961..15278085 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:26 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15276440..15277555 357..1472 100 <- Minus
3R 15277614..15277729 241..356 100 <- Minus
3R 15277786..15277900 126..240 100 <- Minus
3R 15277961..15278085 1..125 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:26:26 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15276440..15277555 357..1472 100 <- Minus
3R 15277614..15277729 241..356 100 <- Minus
3R 15277786..15277900 126..240 100 <- Minus
3R 15277961..15278085 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:17:22 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11102162..11103277 357..1472 100 <- Minus
arm_3R 11103336..11103451 241..356 100 <- Minus
arm_3R 11103508..11103622 126..240 100 <- Minus
arm_3R 11103683..11103807 1..125 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:39 Download gff for LD22902.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15017271..15018386 357..1472 100 <- Minus
3R 15018445..15018560 241..356 100 <- Minus
3R 15018617..15018731 126..240 100 <- Minus
3R 15018792..15018916 1..125 100   Minus

LD22902.hyp Sequence

Translation from 52 to 1326

> LD22902.hyp
MGEVKPAKVENYSTGTDANTLFVDGERVLCFHGPLIYEAKVLKTKPDATP
VEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCGERSKKDNK
KGSAKAKKMEQMRNESRASTPSKDSNTSQSTASSTPTTSAGPGSKSEAGS
TGTTTTNSTANSTTSRAHRKSTQSTPSTARPGTPSDKKEDPAAAETTEEE
GPVAPKKKRMSEQRPSLTGSDVAEKPLPPTTTPSTPTTEPAPCVESEEAY
AAKVEVKIKIPDELKHYLTDDWYAVVREHKLLELPAKVTVQQISEQYLAH
KKSVKSTSASKEVAINDVLDGIVEYFNVMLGSQLLYKFERTQYADVMQKH
PDTPLSELYGSFHLLRLFVRLGSMLSYSALDQQSMQNLLTHVQDFLKFLV
KNSSIFFSMSNFINVDPEYVRNAQ*

LD22902.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
MRG15-PA 424 CG6363-PA 1..424 1..424 2193 100 Plus
MRG15-PB 429 CG6363-PB 1..429 1..424 2177 98.8 Plus

LD22902.pep Sequence

Translation from 52 to 1326

> LD22902.pep
MGEVKPAKVENYSTGTDANTLFVDGERVLCFHGPLIYEAKVLKTKPDATP
VEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCGERSKKDNK
KGSAKAKKMEQMRNESRASTPSKDSNTSQSTASSTPTTSAGPGSKSEAGS
TGTTTTNSTANSTTSRAHRKSTQSTPSTARPGTPSDKKEDPAAAETTEEE
GPVAPKKKRMSEQRPSLTGSDVAEKPLPPTTTPSTPTTEPAPCVESEEAY
AAKVEVKIKIPDELKHYLTDDWYAVVREHKLLELPAKVTVQQISEQYLAH
KKSVKSTSASKEVAINDVLDGIVEYFNVMLGSQLLYKFERTQYADVMQKH
PDTPLSELYGSFHLLRLFVRLGSMLSYSALDQQSMQNLLTHVQDFLKFLV
KNSSIFFSMSNFINVDPEYVRNAQ*

LD22902.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11736-PA 423 GF11736-PA 1..423 1..424 1924 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20726-PA 426 GG20726-PA 1..426 1..424 2073 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18746-PA 451 GH18746-PA 1..451 1..424 1514 69.7 Plus
Dgri\GH17043-PA 509 GH17043-PA 10..344 21..359 158 23.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
MRG15-PA 424 CG6363-PA 1..424 1..424 2193 100 Plus
MRG15-PB 429 CG6363-PB 1..429 1..424 2177 98.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24663-PA 462 GI24663-PA 1..462 1..424 1518 68.5 Plus
Dmoj\GI12047-PA 523 GI12047-PA 2..341 13..340 193 24.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12068-PA 427 GL12068-PA 1..427 9..424 1684 76.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19541-PA 427 GA19541-PA 1..427 9..424 1690 76.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25788-PA 424 GM25788-PA 1..424 1..424 2222 97.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20365-PA 424 GD20365-PA 1..424 1..424 2212 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24036-PA 459 GJ24036-PA 1..459 1..424 1566 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13489-PA 446 GK13489-PA 1..446 1..424 1619 72 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26393-PA 426 GE26393-PA 1..426 1..424 2051 95.1 Plus