Clone LD22919 Report

Search the DGRC for LD22919

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:229
Well:19
Vector:pOT2
Associated Gene/Transcriptcsul-RB
Protein status:LD22919.pep: gold
Sequenced Size:1927

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
csul-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LD22919.complete Sequence

1927 bp assembled on 2011-01-03

GenBank Submission: BT125861.1

> LD22919.complete
AAAGATGAATTACTACGTCTGTCTGCACCAGGAGGGTGTTAATAGCATAC
CCAAGTTAATCGAGAAGGCCTTCGCGAACAACTATAATGTGGTTTCCACC
TCTATCAACGCCAATATGTTGCCCTTCGAACCACACGAATCGGATCCCAC
ATATCCGGCCACAATTTTGAGCGGCAGCGACTGGAATTCCAAGGTGATAT
TTACCATGTCCGACGTGAATGTGGACTCGCCGAATGACAAGCTGCGCGAA
CACGCAAAGGAGGTATTCATGAGGGACGTGGCCTGGGCGGAGCACCTGCA
AAATGTGGGCAACCTGATGGTACGGCTGCGCGGTCCGGAAAACGAGAATC
TGGCCTCCATTGTGCTGGCCAAAACAAAGGGGAACTGGTTCATCCAAGTG
CCCATCACCAATCCAGAACTGGCCACATTCGAGCACCGAAAGGATGCCAC
CGCCGAGGAGGTGGCTGAAGCGGAATCGAATGACCCGTGGAACTGGTGGA
ATAACCTGCGCATGGTCACCAAACACAGCACCAAAGTGAAGGTTGTGATA
GAGCTAAACGATGCTGATCGACCCAGCAAGGAAACAGTGCGTCGCTGGTT
GGGCGAACCAATCGAGGCAATCATCATTCCGTCTTCCCTGTTCGTCAGAA
ACCGCTCCAACTACTGTGTGCTGAAGAAGGAGTGGCAGCTCATCGTCGGG
CACTTCATCTCGGTACGGGCCAACATCATCATCTCCACAAATCCCAACGA
TAAGGCTTTGTGCCAGTACGCGGATTACGTAAATAAGCTAATTAATGATA
ACTGCGATAAGCACATGCTAAACAGCTATGAAAACATGCTGGAAATTCCA
CTGCAGCCTCTTTGCGATAATCTGGACACCTATACCTATGAGGTATTCGA
AACTGATCCTGTCAAATACAAACTCTATCAGGATGCCGTACAAGCGGCCC
TGTTGGATCGAGTAAGCGCTGCGGAGGCTAAAACGAAACTGACAGTTGTA
ATGCTACTGGGTGGAGGACGAGGTCCTTTAGCGAGAGCTGTTTTCAATGC
TGCCGAGTTAACGAAGCGCAAAGTTCGCCTCTACATCATAGAAAAGAATC
CCAATGCCATCCGCACCCTCTCCAACATGGTTAAAACGCTTTGGGCCGAT
AAGGATGTTCACATTTTTTCAAAGGACATGCGGGACTTTTCCCCTCCAGA
GCTGGCTGACATCATGGTTTCGGAGTTACTTGGTTCCTTTGGCGATAATG
AACTTTCGCCCGAGTGCCTTGATGGAGCACTGAAGCTGCTCAAACCGGAT
GGAATCAGTATACCCTACAAATCCACCTCCTACATTAATCCACTGATGTC
AGCAGTGCTGCACCAAAATGTCTGCCAATTGTTACCAACCTATCCTGCCT
TCGACTACGGCTATGTGTCGCTGCTAAAGAATATTTACCATATTGACGAG
CCGCAGGCTCTGTTTGAATTCGTACATCCTAATCGAGCGGAAAATATTGA
CAATACTCGCTGCAAGACGGTTTCATTTAAAGTCAATAAAGATTGCGTGC
TGCACGGAATCGGCGGATACTTTGATACCCATTTGTACAAGGACATCTGC
CTAAGCATCAATCCTCTGACCCATACGCCTGGCATGTTCTCCTGGTTCCC
CATGTTCTTCGCAACGCGTCCAAGAACTCTGAGGGAGGGACAGACTATAT
CCATCCAGTTTTGGCGATGCGTGGATGCAACCAAAGTGTGGTACGAATGG
CAGGTGGTCAATTCTCCAGACGATTGGGAGCACCATAACACACGCGGGAC
AGGTTACAACATGCGATTGTAACAGCAGACGATGTAATAACAACCAATAG
CCAAATAATCGGCATAATTTTTTTGAACTGCAATAAGAATCAAACTAAAG
AGACCTTAAAAAAAAAAAAAAAAAAAA

LD22919.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12153494..12154006 1154..1666 2565 100 Plus
chr2R 21145070 chr2R 12152534..12152979 380..825 2230 100 Plus
chr2R 21145070 chr2R 12152096..12152476 1..381 1905 100 Plus
chr2R 21145070 chr2R 12154071..12154312 1666..1907 1210 100 Plus
chr2R 21145070 chr2R 12153039..12153206 824..991 840 100 Plus
chr2R 21145070 chr2R 12153266..12153429 991..1154 820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:23:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16266141..16266653 1154..1666 2565 100 Plus
2R 25286936 2R 16265181..16265626 380..825 2230 100 Plus
2R 25286936 2R 16264743..16265123 1..381 1905 100 Plus
2R 25286936 2R 16266718..16266961 1666..1909 1220 100 Plus
2R 25286936 2R 16265686..16265853 824..991 840 100 Plus
2R 25286936 2R 16265913..16266076 991..1154 820 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16267340..16267852 1154..1666 2565 100 Plus
2R 25260384 2R 16266380..16266825 380..825 2230 100 Plus
2R 25260384 2R 16265942..16266322 1..381 1905 100 Plus
2R 25260384 2R 16267917..16268160 1666..1909 1220 100 Plus
2R 25260384 2R 16266885..16267052 824..991 840 100 Plus
2R 25260384 2R 16267112..16267275 991..1154 820 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:23:01 has no hits.

LD22919.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:24:14 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12152096..12152475 1..380 100 -> Plus
chr2R 12152535..12152979 381..825 100 -> Plus
chr2R 12153041..12153206 826..991 100 -> Plus
chr2R 12153267..12153429 992..1154 100 -> Plus
chr2R 12153495..12154006 1155..1666 100 -> Plus
chr2R 12154072..12154312 1667..1907 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-05 09:00:58 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 1..1818 5..1822 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:37:09 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 1..1818 5..1822 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:56:20 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 1..1818 5..1822 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 09:00:58 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 69..1975 1..1907 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:37:09 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 92..1998 1..1907 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:56:20 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
csul-RB 92..1998 1..1907 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:14 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1667..1907 100   Plus
2R 16264743..16265122 1..380 100 -> Plus
2R 16265182..16265626 381..825 100 -> Plus
2R 16265688..16265853 826..991 100 -> Plus
2R 16265914..16266076 992..1154 100 -> Plus
2R 16266142..16266653 1155..1666 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:14 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1667..1907 100   Plus
2R 16264743..16265122 1..380 100 -> Plus
2R 16265182..16265626 381..825 100 -> Plus
2R 16265688..16265853 826..991 100 -> Plus
2R 16265914..16266076 992..1154 100 -> Plus
2R 16266142..16266653 1155..1666 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:24:14 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16266719..16266959 1667..1907 100   Plus
2R 16264743..16265122 1..380 100 -> Plus
2R 16265182..16265626 381..825 100 -> Plus
2R 16265688..16265853 826..991 100 -> Plus
2R 16265914..16266076 992..1154 100 -> Plus
2R 16266142..16266653 1155..1666 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:37:09 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12153419..12153581 992..1154 100 -> Plus
arm_2R 12152248..12152627 1..380 100 -> Plus
arm_2R 12152687..12153131 381..825 100 -> Plus
arm_2R 12153193..12153358 826..991 100 -> Plus
arm_2R 12153647..12154158 1155..1666 100 -> Plus
arm_2R 12154224..12154464 1667..1907 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:53:28 Download gff for LD22919.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16267113..16267275 992..1154 100 -> Plus
2R 16265942..16266321 1..380 100 -> Plus
2R 16266381..16266825 381..825 100 -> Plus
2R 16266887..16267052 826..991 100 -> Plus
2R 16267341..16267852 1155..1666 100 -> Plus
2R 16267918..16268158 1667..1907 100   Plus

LD22919.hyp Sequence

Translation from 0 to 1821

> LD22919.hyp
KMNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPT
YPATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQ
NVGNLMVRLRGPENENLASIVLAKTKGNWFIQVPITNPELATFEHRKDAT
AEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETVRRWL
GEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIISTNPND
KALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTYEVFE
TDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARAVFNA
AELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDFSPPE
LADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYINPLMS
AVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRAENID
NTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMFSWFP
MFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHNTRGT
GYNMRL*

LD22919.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
csul-PB 605 CG3730-PB 1..605 2..606 3235 100 Plus
csul-PA 610 CG3730-PA 1..610 2..606 3219 99.2 Plus

LD22919.pep Sequence

Translation from 1 to 1821

> LD22919.pep
KMNYYVCLHQEGVNSIPKLIEKAFANNYNVVSTSINANMLPFEPHESDPT
YPATILSGSDWNSKVIFTMSDVNVDSPNDKLREHAKEVFMRDVAWAEHLQ
NVGNLMVRLRGPENENLASIVLAKTKGNWFIQVPITNPELATFEHRKDAT
AEEVAEAESNDPWNWWNNLRMVTKHSTKVKVVIELNDADRPSKETVRRWL
GEPIEAIIIPSSLFVRNRSNYCVLKKEWQLIVGHFISVRANIIISTNPND
KALCQYADYVNKLINDNCDKHMLNSYENMLEIPLQPLCDNLDTYTYEVFE
TDPVKYKLYQDAVQAALLDRVSAAEAKTKLTVVMLLGGGRGPLARAVFNA
AELTKRKVRLYIIEKNPNAIRTLSNMVKTLWADKDVHIFSKDMRDFSPPE
LADIMVSELLGSFGDNELSPECLDGALKLLKPDGISIPYKSTSYINPLMS
AVLHQNVCQLLPTYPAFDYGYVSLLKNIYHIDEPQALFEFVHPNRAENID
NTRCKTVSFKVNKDCVLHGIGGYFDTHLYKDICLSINPLTHTPGMFSWFP
MFFATRPRTLREGQTISIQFWRCVDATKVWYEWQVVNSPDDWEHHNTRGT
GYNMRL*

LD22919.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13582-PA 605 GF13582-PA 1..605 2..606 2789 82.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20586-PA 605 GG20586-PA 1..605 2..606 3051 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:57:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22107-PA 604 GH22107-PA 1..604 2..606 2577 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
csul-PB 605 CG3730-PB 1..605 2..606 3235 100 Plus
csul-PA 610 CG3730-PA 1..610 2..606 3219 99.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19242-PA 604 GI19242-PA 1..604 2..606 2535 76.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10719-PA 604 GL10719-PA 1..604 2..606 2586 77.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17646-PA 604 GA17646-PA 1..604 2..606 2603 77.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21676-PA 605 GM21676-PA 1..605 2..606 3078 93.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11176-PA 605 GD11176-PA 1..605 2..606 3030 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20318-PA 604 GJ20318-PA 1..604 2..606 2598 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20749-PA 606 GK20749-PA 4..606 1..606 2589 76.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11771-PA 605 GE11771-PA 1..605 2..606 3025 93.4 Plus