Clone LD22945 Report

Search the DGRC for LD22945

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:229
Well:45
Vector:pOT2
Associated Gene/TranscriptCG44254-RA
Protein status:LD22945.pep: gold
Preliminary Size:3700
Sequenced Size:1823

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31120 2001-09-19 Blastp of sequenced clone
CG31120 2008-04-29 Release 5.5 accounting
CG31120 2008-08-15 Release 5.9 accounting
CG31120 2008-12-18 5.12 accounting

Clone Sequence Records

LD22945.complete Sequence

1823 bp (1823 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058522

> LD22945.complete
CTCTAGCTGCACAAGCCAATTTTTTTATTTTCCCTGGCAAAAATTCACGT
TTTTAACCGAAAATTTGACTCACAGCATCATGGAAACCTCGAGCTCCAGT
CCAGTAAAGCCCAGGAGAAAAGACAAGGACGAAGATGGTCGTGCAGAGCA
GGAGGATTCCGCAGATCAGGTGGGCGAGCCGCACAGGAAGCTTTTGCGCC
TGGGCGACATCCTTGAAACGAACGAAGTGCTCCTGAACGAGGCGTATCAG
CAACCGGAACTTACCAAGTGGCTCCAAACAGCCTGGACGGAGGAGAAGAG
CCAAGGGACCAAGGAGACGCAAACCGGTGCTCAGGTCTTCTCGGATCCCT
TTCAAATCTGCCTTCTGCCCGGCATGCTGGAGAAGGGCCAAAGCCAGGCG
CTGGTCGCCGAGATCATCCAGAAGGTGCAGTGGTCGCGCAAACAGATGGA
TTTGTATGAGTTCTACCAGAGCGCCGACCTCTCCAACATGCCCGCTTGCC
GACTGTTGACCAACTTCCTGCAGGTGCTGCGCAAACAAGTGCGTCCCTGG
CTGGAGAAGGTTACCAACCTCAAGCTGGACTATGTGTCCGCCTCCTGCAG
CATGTACACCTGCGGCGACTATCTGCTCGTGCACGACGATCTGCTTAAGG
ACCGACAAGTGGCCTTCATTTACTATCTATCGCCTTGGGAAGGAGCGGAG
GAATGGACGGATGAGCAGGGCGGATGCCTAGAGATCTTCGGTAGCGACGA
TCAGTGCTTTCCACAGTTTCCAGTGCAGCGAAAGATCGCCCCCAAAGACA
ACCAGTTTGCCTTCTTCAAGGTGGGCTCGCGCTCCTTCCACCAAGTAGGC
GAGGTTACTACATTCGACTACCCGCGTCTTACCATAAACGGATGGTTCCA
CGGCGATACCAATGAGGCCTTCGTGGCCGACTCCCTGCGCGCCTTTCCCC
GCCTGAATTACCTGCAACCTGATGGCCTTAATAGGCCACCGCTTGGCCTG
TTTCTAAACAACGTGTATCTAAAGGGGGCCACCCGCCGGAGCATCCAAAA
GCGGATCGAAGAAAACTCCGAGATTTGTTTATACGAGTTCTTCAAGCGAG
AGAAATTCGAATTGGCCCGGTCGCAGCTGTTGGCCGATTCGGATACCTTG
AAGTGGCGAAGACAGGGACCCGCAAACGCACACAACTATGAAGTGCTGGA
TTTGACAACAGCCAGAGGCACCATACTGGAACTACTGCAACTGTTCCGTA
GCCACGCCATGTTTGATTTGCTGCGAGATTTCACCGATCTGGATTTGGCA
GGCACCGATGCCGAAAGTCCAACATGCAGCGTGGAACTGCAGCGCTGGTC
CCACGGCAACTACACAGTGCTGGGCGACGGTTTGACCAGCGAGGAGAACA
CTTTGGACCTGGTTTACTACCTGAACGCGGCAGAAGGAGCAGCGGTGATC
ACATACCTCGCACCCGACGCCGAAATGCCAACAGCAAAAGCACCGACGGA
CGGAAGGCGATCGGACTACGATGACGAGGAAGAGGACGATTCCGTTCTGC
TTACTATCACGCCGGTGGACAACGCCCTGAACATAGTATACCGGTGCGAG
GGCACCACCAAGTTCACCAAATACGTGTCGCGCAACACGCCCCTTGAAAA
GGGACCTGTTTTTGTTATTTCGTGCAGCTACAAGGAGTAGCATGTGATCC
TGTTTCACAACATGCGCACAATTACTCGTCAAGGACTATTAACATTCATA
CCGTTCTCCTGTACAGAAACTAATTTACATAATAAACTTTATAAAACACA
AATCAAAAAAAAAAAAAAAAAAA

LD22945.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31120-RA 1825 CG31120-RA 19..1825 1..1807 9035 100 Plus
CG31120-RB 1778 CG31120-RB 19..154 1..136 680 100 Plus
CG31120.a 2128 CG31120.a 19..154 1..136 680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20739026..20740697 1804..133 8360 100 Minus
chr3R 27901430 chr3R 20740895..20741028 134..1 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24915836..24917511 1808..133 8380 100 Minus
3R 32079331 3R 24917709..24917842 134..1 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24656667..24658342 1808..133 8380 100 Minus
3R 31820162 3R 24658540..24658673 134..1 670 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:53:58 has no hits.

LD22945.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:51 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20739026..20740695 135..1804 100 <- Minus
chr3R 20740895..20741028 1..134 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:28 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 1..1611 80..1690 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:45 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 1..1611 80..1690 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:39 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG44254-RA 1..1611 80..1690 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:21 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 1..1611 80..1690 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:32 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG44254-RA 1..1611 80..1690 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:31 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 1..1804 1..1804 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:45 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 19..1822 1..1804 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:39 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG44254-RA 23..1826 1..1804 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:22 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RA 1..1804 1..1804 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:32 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
CG44254-RA 23..1826 1..1804 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24915840..24917509 135..1804 100 <- Minus
3R 24917709..24917842 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24915840..24917509 135..1804 100 <- Minus
3R 24917709..24917842 1..134 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24915840..24917509 135..1804 100 <- Minus
3R 24917709..24917842 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:39 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20741562..20743231 135..1804 100 <- Minus
arm_3R 20743431..20743564 1..134 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:14 Download gff for LD22945.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24658540..24658673 1..134 100   Minus
3R 24656671..24658340 135..1804 100 <- Minus

LD22945.hyp Sequence

Translation from 0 to 1689

> LD22945.hyp
SSCTSQFFYFPWQKFTFLTENLTHSIMETSSSSPVKPRRKDKDEDGRAEQ
EDSADQVGEPHRKLLRLGDILETNEVLLNEAYQQPELTKWLQTAWTEEKS
QGTKETQTGAQVFSDPFQICLLPGMLEKGQSQALVAEIIQKVQWSRKQMD
LYEFYQSADLSNMPACRLLTNFLQVLRKQVRPWLEKVTNLKLDYVSASCS
MYTCGDYLLVHDDLLKDRQVAFIYYLSPWEGAEEWTDEQGGCLEIFGSDD
QCFPQFPVQRKIAPKDNQFAFFKVGSRSFHQVGEVTTFDYPRLTINGWFH
GDTNEAFVADSLRAFPRLNYLQPDGLNRPPLGLFLNNVYLKGATRRSIQK
RIEENSEICLYEFFKREKFELARSQLLADSDTLKWRRQGPANAHNYEVLD
LTTARGTILELLQLFRSHAMFDLLRDFTDLDLAGTDAESPTCSVELQRWS
HGNYTVLGDGLTSEENTLDLVYYLNAAEGAAVITYLAPDAEMPTAKAPTD
GRRSDYDDEEEDDSVLLTITPVDNALNIVYRCEGTTKFTKYVSRNTPLEK
GPVFVISCSYKE*

LD22945.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG44254-PA 536 CG44254-PA 1..536 27..562 2827 100 Plus

LD22945.pep Sequence

Translation from 79 to 1689

> LD22945.pep
METSSSSPVKPRRKDKDEDGRAEQEDSADQVGEPHRKLLRLGDILETNEV
LLNEAYQQPELTKWLQTAWTEEKSQGTKETQTGAQVFSDPFQICLLPGML
EKGQSQALVAEIIQKVQWSRKQMDLYEFYQSADLSNMPACRLLTNFLQVL
RKQVRPWLEKVTNLKLDYVSASCSMYTCGDYLLVHDDLLKDRQVAFIYYL
SPWEGAEEWTDEQGGCLEIFGSDDQCFPQFPVQRKIAPKDNQFAFFKVGS
RSFHQVGEVTTFDYPRLTINGWFHGDTNEAFVADSLRAFPRLNYLQPDGL
NRPPLGLFLNNVYLKGATRRSIQKRIEENSEICLYEFFKREKFELARSQL
LADSDTLKWRRQGPANAHNYEVLDLTTARGTILELLQLFRSHAMFDLLRD
FTDLDLAGTDAESPTCSVELQRWSHGNYTVLGDGLTSEENTLDLVYYLNA
AEGAAVITYLAPDAEMPTAKAPTDGRRSDYDDEEEDDSVLLTITPVDNAL
NIVYRCEGTTKFTKYVSRNTPLEKGPVFVISCSYKE*

LD22945.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18678-PA 1037 GF18678-PA 1..519 1..507 2259 82.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14257-PA 425 GH14257-PA 1..425 123..536 1830 80.3 Plus
Dgri\GH14256-PA 113 GH14256-PA 4..103 6..104 192 46.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
sud1-PA 536 CG44254-PA 1..536 1..536 2827 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23150-PA 547 GI23150-PA 1..547 1..536 2126 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23075-PA 536 GL23075-PA 1..536 1..536 2350 81 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30146-PA 536 GA30146-PA 1..536 1..536 2356 81.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16466-PA 536 GM16466-PA 1..536 1..536 2832 97.9 Plus
Dsec\GM17768-PA 523 GM17768-PA 1..523 1..536 2614 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10452-PA 551 GJ10452-PA 4..551 6..536 2115 72.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14270-PA 529 GK14270-PA 1..529 1..536 2132 76.1 Plus