Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
LD22945.complete Sequence
1823 bp (1823 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058522
> LD22945.complete
CTCTAGCTGCACAAGCCAATTTTTTTATTTTCCCTGGCAAAAATTCACGT
TTTTAACCGAAAATTTGACTCACAGCATCATGGAAACCTCGAGCTCCAGT
CCAGTAAAGCCCAGGAGAAAAGACAAGGACGAAGATGGTCGTGCAGAGCA
GGAGGATTCCGCAGATCAGGTGGGCGAGCCGCACAGGAAGCTTTTGCGCC
TGGGCGACATCCTTGAAACGAACGAAGTGCTCCTGAACGAGGCGTATCAG
CAACCGGAACTTACCAAGTGGCTCCAAACAGCCTGGACGGAGGAGAAGAG
CCAAGGGACCAAGGAGACGCAAACCGGTGCTCAGGTCTTCTCGGATCCCT
TTCAAATCTGCCTTCTGCCCGGCATGCTGGAGAAGGGCCAAAGCCAGGCG
CTGGTCGCCGAGATCATCCAGAAGGTGCAGTGGTCGCGCAAACAGATGGA
TTTGTATGAGTTCTACCAGAGCGCCGACCTCTCCAACATGCCCGCTTGCC
GACTGTTGACCAACTTCCTGCAGGTGCTGCGCAAACAAGTGCGTCCCTGG
CTGGAGAAGGTTACCAACCTCAAGCTGGACTATGTGTCCGCCTCCTGCAG
CATGTACACCTGCGGCGACTATCTGCTCGTGCACGACGATCTGCTTAAGG
ACCGACAAGTGGCCTTCATTTACTATCTATCGCCTTGGGAAGGAGCGGAG
GAATGGACGGATGAGCAGGGCGGATGCCTAGAGATCTTCGGTAGCGACGA
TCAGTGCTTTCCACAGTTTCCAGTGCAGCGAAAGATCGCCCCCAAAGACA
ACCAGTTTGCCTTCTTCAAGGTGGGCTCGCGCTCCTTCCACCAAGTAGGC
GAGGTTACTACATTCGACTACCCGCGTCTTACCATAAACGGATGGTTCCA
CGGCGATACCAATGAGGCCTTCGTGGCCGACTCCCTGCGCGCCTTTCCCC
GCCTGAATTACCTGCAACCTGATGGCCTTAATAGGCCACCGCTTGGCCTG
TTTCTAAACAACGTGTATCTAAAGGGGGCCACCCGCCGGAGCATCCAAAA
GCGGATCGAAGAAAACTCCGAGATTTGTTTATACGAGTTCTTCAAGCGAG
AGAAATTCGAATTGGCCCGGTCGCAGCTGTTGGCCGATTCGGATACCTTG
AAGTGGCGAAGACAGGGACCCGCAAACGCACACAACTATGAAGTGCTGGA
TTTGACAACAGCCAGAGGCACCATACTGGAACTACTGCAACTGTTCCGTA
GCCACGCCATGTTTGATTTGCTGCGAGATTTCACCGATCTGGATTTGGCA
GGCACCGATGCCGAAAGTCCAACATGCAGCGTGGAACTGCAGCGCTGGTC
CCACGGCAACTACACAGTGCTGGGCGACGGTTTGACCAGCGAGGAGAACA
CTTTGGACCTGGTTTACTACCTGAACGCGGCAGAAGGAGCAGCGGTGATC
ACATACCTCGCACCCGACGCCGAAATGCCAACAGCAAAAGCACCGACGGA
CGGAAGGCGATCGGACTACGATGACGAGGAAGAGGACGATTCCGTTCTGC
TTACTATCACGCCGGTGGACAACGCCCTGAACATAGTATACCGGTGCGAG
GGCACCACCAAGTTCACCAAATACGTGTCGCGCAACACGCCCCTTGAAAA
GGGACCTGTTTTTGTTATTTCGTGCAGCTACAAGGAGTAGCATGTGATCC
TGTTTCACAACATGCGCACAATTACTCGTCAAGGACTATTAACATTCATA
CCGTTCTCCTGTACAGAAACTAATTTACATAATAAACTTTATAAAACACA
AATCAAAAAAAAAAAAAAAAAAA
LD22945.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31120-RA | 1825 | CG31120-RA | 19..1825 | 1..1807 | 9035 | 100 | Plus |
CG31120-RB | 1778 | CG31120-RB | 19..154 | 1..136 | 680 | 100 | Plus |
CG31120.a | 2128 | CG31120.a | 19..154 | 1..136 | 680 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 20739026..20740697 | 1804..133 | 8360 | 100 | Minus |
chr3R | 27901430 | chr3R | 20740895..20741028 | 134..1 | 670 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24915836..24917511 | 1808..133 | 8380 | 100 | Minus |
3R | 32079331 | 3R | 24917709..24917842 | 134..1 | 670 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 24656667..24658342 | 1808..133 | 8380 | 100 | Minus |
3R | 31820162 | 3R | 24658540..24658673 | 134..1 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 15:53:58 has no hits.
LD22945.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:51 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 20739026..20740695 | 135..1804 | 100 | <- | Minus |
chr3R | 20740895..20741028 | 1..134 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:28 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 1..1611 | 80..1690 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:45 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 1..1611 | 80..1690 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:39 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44254-RA | 1..1611 | 80..1690 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:21 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 1..1611 | 80..1690 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:32 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44254-RA | 1..1611 | 80..1690 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:31 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 1..1804 | 1..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:45 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 19..1822 | 1..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:39 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44254-RA | 23..1826 | 1..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:22 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31120-RA | 1..1804 | 1..1804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:32 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG44254-RA | 23..1826 | 1..1804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24915840..24917509 | 135..1804 | 100 | <- | Minus |
3R | 24917709..24917842 | 1..134 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24915840..24917509 | 135..1804 | 100 | <- | Minus |
3R | 24917709..24917842 | 1..134 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:51 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24915840..24917509 | 135..1804 | 100 | <- | Minus |
3R | 24917709..24917842 | 1..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:39 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20741562..20743231 | 135..1804 | 100 | <- | Minus |
arm_3R | 20743431..20743564 | 1..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:14 Download gff for
LD22945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24658540..24658673 | 1..134 | 100 | | Minus |
3R | 24656671..24658340 | 135..1804 | 100 | <- | Minus |
LD22945.hyp Sequence
Translation from 0 to 1689
> LD22945.hyp
SSCTSQFFYFPWQKFTFLTENLTHSIMETSSSSPVKPRRKDKDEDGRAEQ
EDSADQVGEPHRKLLRLGDILETNEVLLNEAYQQPELTKWLQTAWTEEKS
QGTKETQTGAQVFSDPFQICLLPGMLEKGQSQALVAEIIQKVQWSRKQMD
LYEFYQSADLSNMPACRLLTNFLQVLRKQVRPWLEKVTNLKLDYVSASCS
MYTCGDYLLVHDDLLKDRQVAFIYYLSPWEGAEEWTDEQGGCLEIFGSDD
QCFPQFPVQRKIAPKDNQFAFFKVGSRSFHQVGEVTTFDYPRLTINGWFH
GDTNEAFVADSLRAFPRLNYLQPDGLNRPPLGLFLNNVYLKGATRRSIQK
RIEENSEICLYEFFKREKFELARSQLLADSDTLKWRRQGPANAHNYEVLD
LTTARGTILELLQLFRSHAMFDLLRDFTDLDLAGTDAESPTCSVELQRWS
HGNYTVLGDGLTSEENTLDLVYYLNAAEGAAVITYLAPDAEMPTAKAPTD
GRRSDYDDEEEDDSVLLTITPVDNALNIVYRCEGTTKFTKYVSRNTPLEK
GPVFVISCSYKE*
LD22945.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG44254-PA | 536 | CG44254-PA | 1..536 | 27..562 | 2827 | 100 | Plus |
LD22945.pep Sequence
Translation from 79 to 1689
> LD22945.pep
METSSSSPVKPRRKDKDEDGRAEQEDSADQVGEPHRKLLRLGDILETNEV
LLNEAYQQPELTKWLQTAWTEEKSQGTKETQTGAQVFSDPFQICLLPGML
EKGQSQALVAEIIQKVQWSRKQMDLYEFYQSADLSNMPACRLLTNFLQVL
RKQVRPWLEKVTNLKLDYVSASCSMYTCGDYLLVHDDLLKDRQVAFIYYL
SPWEGAEEWTDEQGGCLEIFGSDDQCFPQFPVQRKIAPKDNQFAFFKVGS
RSFHQVGEVTTFDYPRLTINGWFHGDTNEAFVADSLRAFPRLNYLQPDGL
NRPPLGLFLNNVYLKGATRRSIQKRIEENSEICLYEFFKREKFELARSQL
LADSDTLKWRRQGPANAHNYEVLDLTTARGTILELLQLFRSHAMFDLLRD
FTDLDLAGTDAESPTCSVELQRWSHGNYTVLGDGLTSEENTLDLVYYLNA
AEGAAVITYLAPDAEMPTAKAPTDGRRSDYDDEEEDDSVLLTITPVDNAL
NIVYRCEGTTKFTKYVSRNTPLEKGPVFVISCSYKE*
LD22945.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18678-PA | 1037 | GF18678-PA | 1..519 | 1..507 | 2259 | 82.1 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH14257-PA | 425 | GH14257-PA | 1..425 | 123..536 | 1830 | 80.3 | Plus |
Dgri\GH14256-PA | 113 | GH14256-PA | 4..103 | 6..104 | 192 | 46.2 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sud1-PA | 536 | CG44254-PA | 1..536 | 1..536 | 2827 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI23150-PA | 547 | GI23150-PA | 1..547 | 1..536 | 2126 | 74 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL23075-PA | 536 | GL23075-PA | 1..536 | 1..536 | 2350 | 81 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA30146-PA | 536 | GA30146-PA | 1..536 | 1..536 | 2356 | 81.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16466-PA | 536 | GM16466-PA | 1..536 | 1..536 | 2832 | 97.9 | Plus |
Dsec\GM17768-PA | 523 | GM17768-PA | 1..523 | 1..536 | 2614 | 93.8 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ10452-PA | 551 | GJ10452-PA | 4..551 | 6..536 | 2115 | 72.8 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK14270-PA | 529 | GK14270-PA | 1..529 | 1..536 | 2132 | 76.1 | Plus |