Clone LD22957 Report

Search the DGRC for LD22957

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:229
Well:57
Vector:pOT2
Associated Gene/TranscriptCycD-RD
Protein status:LD22957.pep: gold
Preliminary Size:2200
Sequenced Size:2137

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9096 2001-11-29 Blastp of sequenced clone
CG9096 2003-01-01 Sim4 clustering to Release 3
CycD 2008-04-29 Release 5.5 accounting
CycD 2008-08-15 Release 5.9 accounting
CycD 2008-12-18 5.12 accounting

Clone Sequence Records

LD22957.complete Sequence

2137 bp (2137 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069509

> LD22957.complete
AAGTGGCAAACGTGTGCAACTTCGAGTATACTTTTTTAATAGTTAATTTA
CATTACTCCATGAAGTGCTGTGCCGTTTGTATATAACCAGAATTCCGAGA
ATAGGCTGTTCCCATATCGGAGTTACCCAAAGTTCCTGATAAATCGGCAC
ACATAAATGGCTTGAGAGTGCGGCGATCCATAGAATCCATAGCTTTAAAC
GGAACGTATGGCCGATATAATGGATCTTTTATGCTCGGAAATCATAGTCT
ACGAATCAGATCCATCATTGTATCGTTTGAACAAACGACAGCAGCAAATG
TCCTCACCGGCGATCATTCGGGATCAATCATCGATATGTTCATCCTTGGG
GGACGCGGAATCCGATTCCCATCCGGATGCCCAGAACAATGCCGTAGTGT
GCAATATGAAGGAGCTGGTGTATATATACGCGTCCGTGGACTCGGCTGCG
AAAAATCCAGAACAATTGGAGCCGCCTCCGCCACCTCCACCACCGCCGCC
ACCACCACCGACAGCGACCCAATCAATCCAAAGTTATCCGCGTTACATCA
GCCAGGAGCCACCGACGTCACATTGCCAACGACTCGACGAACGCCTGACC
ACAACAGCCGATCCACCCGCAACCGACAACGTGAACACTGCCATCGGGGA
TCCCACATTGTATTCGGATCGGTGTCTGGAGAATTTCCTCAAGGTCGAGG
AGAAGCACCACAAAATTCCCGACACGTACTTTAGCATCCAGAAGGATATT
ACGCCACCGATGCGCAAAATTGTCGCCGAATGGATGATGGAAGTGTGTGC
CGAGGAAAATTGCCAGGAAGAGGTCGTATTACTGGCATTAAATTACATGG
ATCGATTTCTTTCGAGCAAATCAGTACGCAAGACCCAGCTACAAATTTTG
GCCGCAGCTTGCCTCTTACTGGCTTCAAAGCTCCGTGAACCCAGCTGTCG
TGCTCTTTCGGTGGATCTACTCGTTGTTTACACGGACAACAGCATCTACA
AGGATGATTTGATTAAATGGGAGCTGTATGTGCTAAGTCGCTTGGGCTGG
GACCTCTCATCTGTGACTCCCTTGGACTTCCTTGAGCTTCTGATGATGCG
CCTGCCGATAGGCAGCAAAAACTTTCCGGACATAAACATTGGCAAAGTGC
GGGGACATGCTCAGGCATTTATATCGTTGGCAGCAAAAGAACATAAGTTT
GCCAAGTTCTCGGCCAGCACCATAGCTGCATCGAGCATAGCTGCGTCAAT
GAATGGCCTAAAGTGGCATCTGCGATCGGGACACAATCTACACTTCCTTT
TGAGTCTGATGACCGATCTAACCAGCGTGGAGCAAGCTCAGGTGCGAGAT
TGTATGCTGCACATGGAGGACATCTTTAAGGAGCACAGTCGGAATCTAGA
GCCATTTCTAGTGAATATTGACCCAAAAGAAATGTCAACATTATACTACA
AGAGGCGCTTCCAAATACATCAATCGCAGCATCTCTCGCAAATCTCAATT
AGACCCTTGCCGCTACCGAAAGCTCCTGCCGAGTGCGTGGAGCAACACCA
GCAGCAGCACAACTTTGGGTCCGCAGCGCCACATCGGACGCACACGTGCA
AGATGCAGGCGCAGGCTCAGGCTCAAAACGAGATACAAGACGTTACATTT
TGAGGTGTCAAATGATAGTTATGCATACATGATAGTTATGTCAGGCTTAA
GTTGAAATTATATATAGGATCCAAATAGTCCGATCACTATAGGATTGGCC
AATATCACACTATTTACATTTGAATCGATGTATTTTATATGTACGCAACT
ATTTTTTACCAAACTATGGGTTATTATTTTTAGCTATCCTAAATATTTTG
TATAAAATAGTTTTAAATAATCATCATGAAACTTTGAAATGGATGAAACA
TAAAAACGAGACTGATTGTAAGCAGCAAAGCAACATTTTTTTTTTGTATA
TAAGCTTTTCGAAATCCTACACAGATAACCAAAAAAGAACGAACTATTAA
ATGCAATTTTTTTAAAAACCATCCAACATAAAGAGAAAAACAATATGTTA
AAGTTAACTTTGGATAACAATTATATAAGTTGGCAAATAAATGATAGAAA
AAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD22957.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-RD 2166 CycD-RD 54..2160 1..2107 10535 100 Plus
CycD-RE 2229 CycD-RE 231..2229 107..2105 9995 100 Plus
CycD-RF 2466 CycD-RF 468..2466 107..2105 9995 100 Plus
CycD-RE 2229 CycD-RE 14..119 1..106 530 100 Plus
CycD-RF 2466 CycD-RF 54..159 1..106 530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15796663..15797432 2105..1336 3850 100 Minus
chrX 22417052 chrX 15798375..15799063 795..107 3445 100 Minus
chrX 22417052 chrX 15797938..15798159 1014..793 1110 100 Minus
chrX 22417052 chrX 15797700..15797874 1189..1015 875 100 Minus
chrX 22417052 chrX 15797494..15797643 1336..1187 750 100 Minus
chrX 22417052 chrX 15799372..15799477 106..1 530 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15906820..15907591 2107..1336 3860 100 Minus
X 23542271 X 15908534..15909222 795..107 3445 100 Minus
X 23542271 X 15908097..15908318 1014..793 1110 100 Minus
X 23542271 X 15907859..15908033 1189..1015 875 100 Minus
X 23542271 X 15907653..15907802 1336..1187 750 100 Minus
X 23542271 X 15909531..15909636 106..1 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15914918..15915689 2107..1336 3860 100 Minus
X 23527363 X 15916632..15917320 795..107 3445 100 Minus
X 23527363 X 15916195..15916416 1014..793 1110 100 Minus
X 23527363 X 15915957..15916131 1189..1015 875 100 Minus
X 23527363 X 15915751..15915900 1336..1187 750 100 Minus
X 23527363 X 15917629..15917734 106..1 530 100 Minus
Blast to na_te.dros performed 2019-03-15 20:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1905..2048 1947..2086 134 59.9 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 871..994 460..582 122 56.5 Plus

LD22957.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:39:46 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15796663..15797432 1336..2105 100 <- Minus
chrX 15797495..15797640 1190..1335 100 <- Minus
chrX 15797700..15797874 1015..1189 100 <- Minus
chrX 15797938..15798159 793..1014 100 <- Minus
chrX 15798378..15799063 107..792 95 <- Minus
chrX 15799372..15799477 1..106 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:29 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RF 1..1434 220..1653 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:16 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RF 1..1434 220..1653 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:55:22 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 1..1434 220..1653 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:31 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 1..1446 208..1653 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:23 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 1..1434 220..1653 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:05 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 35..2139 1..2105 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:15 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 35..2139 1..2105 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:22 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 41..2145 1..2105 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:31 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RA 1..2105 1..2105 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:23 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
CycD-RD 41..2145 1..2105 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:46 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
X 15907654..15907799 1190..1335 100 <- Minus
X 15907859..15908033 1015..1189 100 <- Minus
X 15906822..15907591 1336..2105 100 <- Minus
X 15908097..15908318 793..1014 100 <- Minus
X 15908537..15909222 107..792 100 <- Minus
X 15909531..15909636 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:46 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
X 15907654..15907799 1190..1335 100 <- Minus
X 15907859..15908033 1015..1189 100 <- Minus
X 15906822..15907591 1336..2105 100 <- Minus
X 15908097..15908318 793..1014 100 <- Minus
X 15908537..15909222 107..792 100 <- Minus
X 15909531..15909636 1..106 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:46 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
X 15907654..15907799 1190..1335 100 <- Minus
X 15907859..15908033 1015..1189 100 <- Minus
X 15906822..15907591 1336..2105 100 <- Minus
X 15908097..15908318 793..1014 100 <- Minus
X 15908537..15909222 107..792 100 <- Minus
X 15909531..15909636 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:22 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15800855..15801624 1336..2105 100 <- Minus
arm_X 15801687..15801832 1190..1335 100 <- Minus
arm_X 15801892..15802066 1015..1189 100 <- Minus
arm_X 15802130..15802351 793..1014 100 <- Minus
arm_X 15802570..15803255 107..792 100 <- Minus
arm_X 15803564..15803669 1..106 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:54 Download gff for LD22957.complete
Subject Subject Range Query Range Percent Splice Strand
X 15914920..15915689 1336..2105 100 <- Minus
X 15915752..15915897 1190..1335 100 <- Minus
X 15915957..15916131 1015..1189 100 <- Minus
X 15916195..15916416 793..1014 100 <- Minus
X 15916635..15917320 107..792 100 <- Minus
X 15917629..15917734 1..106 100   Minus

LD22957.pep Sequence

Translation from 207 to 1652

> LD22957.pep
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTF*

LD22957.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24509-PA 466 GF24509-PA 199..336 152..292 197 34.8 Plus
Dana\GF14977-PA 713 GF14977-PA 356..470 181..296 171 30.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19360-PA 475 GG19360-PA 1..475 5..481 2256 93.5 Plus
Dere\GG13881-PA 491 GG13881-PA 204..341 152..292 184 33.3 Plus
Dere\GG24197-PA 708 GG24197-PA 357..556 181..355 176 26.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12170-PA 272 GH12170-PA 2..272 145..418 933 75.6 Plus
Dgri\GH16723-PA 484 GH16723-PA 206..343 152..292 210 35.5 Plus
Dgri\GH13253-PA 641 GH13253-PA 231..384 164..321 175 27.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-PF 477 CG9096-PF 1..477 5..481 2496 100 Plus
CycD-PE 477 CG9096-PE 1..477 5..481 2496 100 Plus
CycD-PD 477 CG9096-PD 1..477 5..481 2496 100 Plus
CycA-PC 490 CG5940-PC 202..339 152..292 187 34 Plus
CycA-PA 491 CG5940-PA 203..340 152..292 187 34 Plus
CycE-PB 602 CG3938-PB 250..449 181..355 169 27.1 Plus
CycE-PD 709 CG3938-PD 357..556 181..355 169 27.1 Plus
CycE-PE 709 CG3938-PE 357..556 181..355 169 27.1 Plus
CycE-PA 709 CG3938-PA 357..556 181..355 169 27.1 Plus
CycE-PC 709 CG3938-PC 357..556 181..355 169 27.1 Plus
CycE-PF 712 CG3938-PF 360..559 181..355 169 27.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14224-PA 201 GI14224-PA 1..198 196..394 608 68.8 Plus
Dmoj\GI13452-PA 525 GI13452-PA 233..370 152..292 207 35.5 Plus
Dmoj\GI17292-PA 647 GI17292-PA 272..386 181..296 171 29.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20678-PA 467 GL20678-PA 1..467 5..481 1292 59.3 Plus
Dper\GL15439-PA 721 GL15439-PA 362..476 181..296 166 31.6 Plus
Dper\GL20815-PA 306 GL20815-PA 4..116 178..292 164 34.7 Plus
Dper\GL18583-PA 439 GL18583-PA 160..304 148..293 158 31.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25615-PA 192 GA25615-PA 4..184 5..196 379 46.3 Plus
Dpse\GA27869-PA 159 GA27869-PA 1..159 324..481 359 52.2 Plus
Dpse\GA25616-PA 67 GA25616-PA 1..56 214..269 216 94.6 Plus
Dpse\GA25959-PA 349 GA25959-PA 93..274 170..361 188 29.2 Plus
Dpse\GA19247-PA 508 GA19247-PA 223..360 152..292 187 33.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22512-PA 481 GM22512-PA 1..481 1..481 2540 97.9 Plus
Dsec\GM24703-PA 490 GM24703-PA 202..339 152..292 189 34 Plus
Dsec\GM14232-PA 706 GM14232-PA 355..554 181..355 179 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15773-PA 481 GD15773-PA 1..481 1..481 2543 98.1 Plus
Dsim\GD12771-PA 490 GD12771-PA 202..339 152..292 189 34 Plus
Dsim\GD21944-PA 701 GD21944-PA 350..549 181..355 178 26.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14657-PA 392 GJ14657-PA 1..381 5..377 949 51.4 Plus
Dvir\GJ11813-PA 511 GJ11813-PA 223..360 152..292 198 34 Plus
Dvir\GJ17903-PA 624 GJ17903-PA 247..459 164..353 195 26.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15308-PA 504 GK15308-PA 164..498 130..477 971 63.4 Plus
Dwil\GK24275-PA 590 GK24275-PA 243..472 181..401 197 25 Plus
Dwil\GK13671-PA 520 GK13671-PA 198..355 130..292 185 31.9 Plus
Dwil\GK13804-PA 418 GK13804-PA 147..276 161..292 181 34.8 Plus
Dwil\GK22753-PA 583 GK22753-PA 322..503 159..350 156 28.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16008-PA 477 GE16008-PA 1..477 5..481 2202 93.3 Plus
Dyak\GE20173-PA 484 GE20173-PA 197..334 152..292 190 34 Plus
Dyak\GE19392-PA 713 GE19392-PA 362..561 181..355 182 26.6 Plus

LD22957.hyp Sequence

Translation from 207 to 1652

> LD22957.hyp
MADIMDLLCSEIIVYESDPSLYRLNKRQQQMSSPAIIRDQSSICSSLGDA
ESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPEQLEPPPPPPPPPPPP
PTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATDNVNTAIGDPT
LYSDRCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEE
NCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRAL
SVDLLVVYTDNSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLP
IGSKNFPDINIGKVRGHAQAFISLAAKEHKFAKFSASTIAASSIAASMNG
LKWHLRSGHNLHFLLSLMTDLTSVEQAQVRDCMLHMEDIFKEHSRNLEPF
LVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPLPKAPAECVEQHQQQ
HNFGSAAPHRTHTCKMQAQAQAQNEIQDVTF*

LD22957.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CycD-PF 477 CG9096-PF 1..477 5..481 2496 100 Plus
CycD-PE 477 CG9096-PE 1..477 5..481 2496 100 Plus
CycD-PD 477 CG9096-PD 1..477 5..481 2496 100 Plus
CycA-PC 490 CG5940-PC 202..339 152..292 187 34 Plus
CycA-PA 491 CG5940-PA 203..340 152..292 187 34 Plus