Clone LD22971 Report

Search the DGRC for LD22971

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:229
Well:71
Vector:pOT2
Associated Gene/TranscriptCG6276-RA
Protein status:LD22971.pep: gold
Preliminary Size:1901
Sequenced Size:1839

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6276 2001-01-01 Release 2 assignment
CG6276 2001-11-09 Blastp of sequenced clone
CG6276 2003-01-01 Sim4 clustering to Release 3
CG6276 2008-04-29 Release 5.5 accounting
CG6276 2008-08-15 Release 5.9 accounting
CG6276 2008-12-18 5.12 accounting

Clone Sequence Records

LD22971.complete Sequence

1839 bp (1839 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069510

> LD22971.complete
TTTGGTTCACAGCACTTAAAAGAACACTTGGGAAAAACAATAAAAATATT
TCGCAAAAGTTATGGCGAACGCTGGATAAGTCAGCCAAAAATTGAATCCA
TCGGAGCGACTGCCTTGGAGCCACAGCCCACCCATGATGACGACCGACTT
CGCGGGCAGCCAGTTCGTGTCCAGCAATCCCAACACCAGCTGTAGTGCAT
CCCGCTGGCTAACGGAGGAGGTCTTTAAACTAATCGAAATTGTGCAGCGC
GACGAGGCCATCTACAATCCGAGGCACAAATACTACTTTTGCCGCCCGTA
CGTGGAGAACTTTTGGCGCGAGGTGGATTTGAAGCTGGAAAAGAATCCGG
GCGCCAGTCTGGCCAAGTGGACCAATTTGCGCATCTCGTTCCGACGAGAG
TACACCAACTATCTGGAGGAAAAGGTGCCACCCTGCTGGTCCTACTTCGA
CCGCATGTTCTTTCTGCATCCGTATCTACGCAAGAAGCACCAGCAGCCCA
AATCGCTGGACACACAGGTGCAGGACGCCCTGGCACACCTCTCGAACCTT
TCTAGTCGTATGCAGCGTGAGCGTTCAGTGACCATTCCGGGCAGCAGCAG
TATTGGTGGCCAGCCCACGCCCTCCGCCCACCAGTCACCACCTGCACAGC
AGCTGGACAACTATCTGGACTACTTTGACGAGGCGGAACACAACAACTCC
GAGCTGGATGACATCATGGAGGAGGAGCAGCAGCGCAACAGTCGTTACCA
CGGCCAGTTGGACGGCAACGACATTAAGTCGGAGTGCGAGGAGCCGGTGG
ATGACTACGAACAAGAGGCGCACGAGCCCGAGGAGGATGAACAGGATGAC
CAGGACCTACACAAGATGGCGCCTACTTCTAGCTCTTCATCGGCGGAGGC
CCAGCGTCGTTATGCCAACCAGCATTCACACGCCAGCCGAATGCTTCCGG
GTCGCCTCCAAATGCGCACCTACCATGACGAGATGCGTGGCGCTATTCGT
CCGCGTTCCCAGGAACTCCAAGCTCCAACTGCAGCAGTGGCCGGGGTCAA
CTACTCCGCACAGCCGACTGCCCATCCAAACATTTCGTTTGTGCGACCTA
CTTTCAGCAAGCCCGTGGATTTGGTTAGCACTACAACGCACGCCGGAGGC
GGAGGAGGAGGAGGTGTTCCAGGAACTGCTGGCTTATCCGAAGCGGAACT
GCCCACACCATCCACTGCGGCCGTGGCCACCCCGATGGCGCCCAGTAGTA
GTGTTAGTGCCAGCAGTAGCAGTAGCTACTTGAGTCAACGGCATGGGCAC
AACCATATGCATGGAGGACATCCACAGGTGCCGCCGTCAGCGCTTCCTCT
GCGTTTGGAAGCCAACAACGCGTCCGGCGGATCCGTGTCCAACGGCGGTG
CGGAGCTGTGCGACTGCAAGACCGATCCGGATGCCATGTTTCTGATGAGC
CTGCTGCCCGACATCCAAAAGCTGAACGGCCGTGATCGCGGCAAGATAAA
GATAGCCTTCCAGAACATCCTGCAGGACTACCTGTATCCGGATTAGCGTT
GATCTCTGTGTATACCTTCCGCTTAACGCAAACGGAACCCAGTTCCAGTA
TCGATTTTGTTTAATATTCTCTTTTGTATTTTCGTTGGAGAAAAAAAAAG
AATCCTTTAAGCTTCGCTGTGCAAGAACAAAGTATCCTTAAAAACGTTTT
GAAAACTATCCGGTATGTTTATTAATTGTATAAATATTTATAAATATTTA
ATGTGTAACACAAGAATAAATTCATTTGAAATTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD22971.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6276-RA 1926 CG6276-RA 143..1926 1..1784 8920 100 Plus
CG14866-RA 1791 CG14866-RA 1703..1791 1784..1696 445 100 Minus
CG14866.a 1823 CG14866.a 1735..1823 1784..1696 445 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11142830..11144394 1783..219 7795 99.9 Minus
chr3R 27901430 chr3R 11144448..11144673 226..1 1115 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:46:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15318202..15319767 1784..219 7830 100 Minus
3R 32079331 3R 15319821..15320046 226..1 1115 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15059033..15060598 1784..219 7830 100 Minus
3R 31820162 3R 15060652..15060877 226..1 1115 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 08:46:52 has no hits.

LD22971.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:47:39 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11142830..11144392 221..1783 97 <- Minus
chr3R 11144454..11144673 1..220 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:30 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1413 134..1546 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:54 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1413 134..1546 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1413 134..1546 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:30 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1413 134..1546 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:27 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1413 134..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:47 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1783 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:53 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1783 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:43 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 24..1806 1..1783 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:30 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 1..1783 1..1783 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:27 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
CG6276-RA 24..1806 1..1783 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:39 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15318203..15319765 221..1783 100 <- Minus
3R 15319827..15320046 1..220 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:39 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15318203..15319765 221..1783 100 <- Minus
3R 15319827..15320046 1..220 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:47:39 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15318203..15319765 221..1783 100 <- Minus
3R 15319827..15320046 1..220 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:43 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11143925..11145487 221..1783 100 <- Minus
arm_3R 11145549..11145768 1..220 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:12 Download gff for LD22971.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15059034..15060596 221..1783 100 <- Minus
3R 15060658..15060877 1..220 100   Minus

LD22971.pep Sequence

Translation from 133 to 1545

> LD22971.pep
MMTTDFAGSQFVSSNPNTSCSASRWLTEEVFKLIEIVQRDEAIYNPRHKY
YFCRPYVENFWREVDLKLEKNPGASLAKWTNLRISFRREYTNYLEEKVPP
CWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDALAHLSNLSSRMQRERSVT
IPGSSSIGGQPTPSAHQSPPAQQLDNYLDYFDEAEHNNSELDDIMEEEQQ
RNSRYHGQLDGNDIKSECEEPVDDYEQEAHEPEEDEQDDQDLHKMAPTSS
SSSAEAQRRYANQHSHASRMLPGRLQMRTYHDEMRGAIRPRSQELQAPTA
AVAGVNYSAQPTAHPNISFVRPTFSKPVDLVSTTTHAGGGGGGGVPGTAG
LSEAELPTPSTAAVATPMAPSSSVSASSSSSYLSQRHGHNHMHGGHPQVP
PSALPLRLEANNASGGSVSNGGAELCDCKTDPDAMFLMSLLPDIQKLNGR
DRGKIKIAFQNILQDYLYPD*

LD22971.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11714-PA 471 GF11714-PA 1..471 2..470 1755 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20693-PA 467 GG20693-PA 1..467 1..470 2140 94.7 Plus
Dere\GG20704-PA 103 GG20704-PA 1..103 368..470 387 93.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18744-PA 489 GH18744-PA 1..489 2..470 1451 62.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6276-PA 470 CG6276-PA 1..470 1..470 2497 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24660-PA 496 GI24660-PA 1..496 2..470 1348 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12066-PA 463 GL12066-PA 1..463 2..470 1619 71.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26181-PA 463 GA26181-PA 1..463 2..470 1613 71.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25786-PA 470 GM25786-PA 1..470 1..470 2497 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20363-PA 470 GD20363-PA 1..470 1..470 2494 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24034-PA 491 GJ24034-PA 1..491 2..470 1358 59.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13487-PA 473 GK13487-PA 1..473 2..470 1451 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26391-PA 467 GE26391-PA 1..467 1..470 2111 94.3 Plus

LD22971.hyp Sequence

Translation from 133 to 1545

> LD22971.hyp
MMTTDFAGSQFVSSNPNTSCSASRWLTEEVFKLIEIVQRDEAIYNPRHKY
YFCRPYVENFWREVDLKLEKNPGASLAKWTNLRISFRREYTNYLEEKVPP
CWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDALAHLSNLSSRMQRERSVT
IPGSSSIGGQPTPSAHQSPPAQQLDNYLDYFDEAEHNNSELDDIMEEEQQ
RNSRYHGQLDGNDIKSECEEPVDDYEQEAHEPEEDEQDDQDLHKMAPTSS
SSSAEAQRRYANQHSHASRMLPGRLQMRTYHDEMRGAIRPRSQELQAPTA
AVAGVNYSAQPTAHPNISFVRPTFSKPVDLVSTTTHAGGGGGGGVPGTAG
LSEAELPTPSTAAVATPMAPSSSVSASSSSSYLSQRHGHNHMHGGHPQVP
PSALPLRLEANNASGGSVSNGGAELCDCKTDPDAMFLMSLLPDIQKLNGR
DRGKIKIAFQNILQDYLYPD*

LD22971.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6276-PA 470 CG6276-PA 1..470 1..470 2497 100 Plus