Clone LD23009 Report

Search the DGRC for LD23009

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:230
Well:9
Vector:pOT2
Associated Gene/TranscriptCG32512-RA
Protein status:LD23009.pep: gold
Preliminary Size:3541
Sequenced Size:2225

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1739 2001-01-01 Release 2 assignment
CG32512 2001-09-19 Blastp of sequenced clone
CG32512 2003-01-01 Sim4 clustering to Release 3
CG32512 2008-04-29 Release 5.5 accounting
CG32512 2008-08-15 Release 5.9 accounting
CG32512 2008-12-18 5.12 accounting

Clone Sequence Records

LD23009.complete Sequence

2225 bp assembled on 2007-03-08

GenBank Submission: AY060370

> LD23009.complete
CACACCTCAACGCGCCGCGTGTCGCACTTGGTCCCCCCGGAATCCAAAAA
AAAAAAAAATAACCACCCCAAATATTAACCCAACCCCACGTTAGAATCGC
AGTCAAAACCCACAAACCGATCCGAAAGCGCGGTGTAGAAAAATCCCAAA
ATCCAATATTTAAAATATACAAACGGAAAGTTAAGTAACCCCCATTAAAT
TTTTTTGCTGTGCGAAGCGAGACAAAGAAGAGTGCCAAAAAGAATACAGA
GCATCTAAAAAGGATTATCAATTCAAAGAGGAGCCACAGAAACCAATGCA
AAGATGTGCCACAATTCAGGGATCGTGGAGAAAAACAACGAGCAGCAGAT
CGAGCGCTACATGGCCTGTGGGATGCCATCGAAGGCGGTGAAGAGTGTCA
AGTACACGCTGAAGAAGCGCGAGAAGAAGGAGCAGCAGCGGAGAGATCTG
GAAAAGGATCTGCACAGGGAACAGCAGTTCCTTGAGGAACTCGAGCTAAG
CAGTAGCGCCAGCGACTCCTCCTCCTCCTCCTCGTCCTCCTCGGTCACCG
GCAGCGATAGCGAGGATAGCGGCGTTACCGAAACCGTTTTGAAATCGTCG
CCGTCGGCGGATATGACAACCAGTCCAAAGGTCATCTCACCGGCCCCCAC
ACCCAGAAGCGACCTCTTACGATTCTGCCCGCGATTTCGCAAGCTGCAGC
AGGAGCAGCAGCAGCAGATGCTCAAGGAGATGGAGTTGCAGGAGGAGGAG
CCCTTGGCCACCAGCACGCCCGCCGCCGCCCTGAAGGCTCAACAGCAGCG
CAAGCTGAGCTCCATGGAGCCGTCAATGGACGACGCCCTGGCCATCGGCA
CCCAGATGACTAGGCAGGTGTCCGAGCGAATCACCTGCCTGGTGGCCAAG
CTGCAGGCCAGTCGCCTGTACACAATTCTGACGCGTACGACACAGCCAGC
ACACTTGATAGCTGTTTGCATCTTGGCCTTTGTGCTGATGACTGTGGGAC
GCGACCTCATCGACCCAACGACAACGGTGGCAACAGCAGAAGCAGCAGCG
TCTGCAACAGCAGCATCGACGAGAACAGCAACGGGCGGAGTTATGGCGGC
CTTGGTCTTCCTGGGCGCCTTTGCCACCCACTTTGGGTCTCAGATCTGGA
TGACATTTGTCTCGGGACTCTCGCTGTATTTCTCTCTGCCCCGCCACGTT
TTCGGGCAGTGCCAGCAGATCCTCTTCCCGCGCTACTTCGCCCTGAACGC
CATGCTCAGTCTGACGATGCTGGTGGTGTATGCCAAGTATTTCCTCAGCG
GATGGACGACATCGGCGGGCATCCAGATGGGATCGCTGGCCCTGGCGGCG
GGAATTGAGGTGGTGGTGCGCCTGTACCTGGTGCCACCGATGCTGCAGCT
GATGCACGAGAAGTACAGGATCGAGGATGCGATCGGCAGTGGCCAGGAGG
TGGGCAGCCTTGTCCAGGGCGACCTCGTCGACTGCCCGCACTATCAGCGC
ATCCACAAGGGATTCCGGCGCATTCACATGACCATCGCCATTGGCAATAT
GACGGTCATGCTGACCACCTGCCTGCAGCTGTATTTTCTGGCATCGAAAA
TACGCCTTAGCTAAGGCAAGCCCGAAGTGAAGAATTTATAGATTTAGGTA
TCCACCACATAACAACGCATACACACACACACACATTACTACTACTGTAC
GTTCCACGTTCGATAAATGTCTCAAATTCAAATATGGCTTATTGAACACT
TGAGTTTTTGAACTGGTCCTCCATCCGGCCCCAAATGCCCTTCCTCCGCC
CCACACACGCCCACACCACCCATACGCCCATGCACGAAAATATTTAATTT
CTCCCAAGGACGCCTTGTTTGCGACGACCTTTCCAATCTGATTTCCTGTG
ATAAACTCAGCCCAAAACTCCCAAAACAAAACACCCACCCGCAAACCACA
GCACATTTAGCCTAGAGTTGATAGCCAATAATTTACAAGAAGTTATTAAT
TAATAGCCTATTGATAATTAATTATACTGTTTTTTTTTTTTTGTCTCATT
CATTAATTTTCTTCTGTTATTTATTAATCCACCGAAAACTATGTTTTTCT
CTGTTTTAAGTGCGGATATTAAGTGAATGTAATTTATATTAAAACAAACA
AACAAAAACAACAACAAAAGAAACAAAATCAAAAACCAAAAAAGCACAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

LD23009.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG32512-RA 2518 CG32512-RA 223..2447 1..2225 11065 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 20927541..20928573 2197..1165 5165 100 Minus
chrX 22417052 chrX 20931757..20932679 923..1 4615 100 Minus
chrX 22417052 chrX 20928958..20929200 1166..924 1215 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21062356..21063416 2225..1165 5245 99.6 Minus
X 23542271 X 21066600..21067522 923..1 4615 100 Minus
X 23542271 X 21063801..21064043 1166..924 1215 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21047448..21048508 2225..1165 5245 99.6 Minus
X 23527363 X 21051692..21052614 923..1 4615 100 Minus
X 23527363 X 21048893..21049135 1166..924 1215 100 Minus
Blast to na_te.dros performed 2019-03-15 16:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2390 1016..1084 167 73.9 Plus
roo 9092 roo DM_ROO 9092bp 1076..1144 1022..1090 156 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6857 1016..1082 155 70.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6815 1016..1100 154 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6781 1000..1084 152 65.9 Plus
roo 9092 roo DM_ROO 9092bp 1093..1162 1012..1084 151 69.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2582..2666 990..1075 148 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6828 1016..1077 148 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6818 1016..1082 145 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2752..2832 1004..1082 139 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1099..1151 1030..1082 139 73.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6827..6898 1016..1084 137 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2360 1029..1084 136 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2364..2432 1016..1081 131 68.1 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 133..439 41..352 128 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2762..2817 1027..1082 127 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2369 1019..1084 125 68.2 Plus
roo 9092 roo DM_ROO 9092bp 1061..1112 1031..1082 125 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1040..1121 1016..1100 121 64 Plus
rover 7318 rover ROVER 7318bp 5572..5629 2106..2049 119 67.2 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 508..567 1009..1067 117 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1533..1589 1016..1069 116 70.2 Plus
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 1839..1948 2058..1953 115 60.9 Minus

LD23009.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:36 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 20927598..20928572 1166..2140 100 <- Minus
chrX 20928959..20929039 1085..1165 100 == Minus
chrX 20929109..20929200 924..1015 100 <- Minus
chrX 20931757..20932679 1..923 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:32 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..1311 304..1614 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:19:43 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..1311 304..1614 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:54:44 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..1311 304..1614 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:16:31 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..1311 304..1614 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:31 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..1311 304..1614 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:35:29 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..2197 1..2197 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:19:43 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 12..2208 1..2197 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:44 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 19..2215 1..2197 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:16:31 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 1..2197 1..2197 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:31 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
CG32512-RA 19..2215 1..2197 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:36 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
X 21062384..21063415 1166..2197 100 <- Minus
X 21063802..21064043 924..1165 100 <- Minus
X 21066600..21067522 1..923 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:36 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
X 21062384..21063415 1166..2197 100 <- Minus
X 21063802..21064043 924..1165 100 <- Minus
X 21066600..21067522 1..923 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:36 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
X 21062384..21063415 1166..2197 100 <- Minus
X 21063802..21064043 924..1165 100 <- Minus
X 21066600..21067522 1..923 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:44 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20934829..20935070 924..1165 100 <- Minus
arm_X 20933411..20934442 1166..2197 100 <- Minus
arm_X 20937627..20938549 1..923 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:08:25 Download gff for LD23009.complete
Subject Subject Range Query Range Percent Splice Strand
X 21047476..21048507 1166..2197 100 <- Minus
X 21048894..21049135 924..1165 100 <- Minus
X 21051692..21052614 1..923 100   Minus

LD23009.pep Sequence

Translation from 303 to 1613

> LD23009.pep
MCHNSGIVEKNNEQQIERYMACGMPSKAVKSVKYTLKKREKKEQQRRDLE
KDLHREQQFLEELELSSSASDSSSSSSSSSVTGSDSEDSGVTETVLKSSP
SADMTTSPKVISPAPTPRSDLLRFCPRFRKLQQEQQQQMLKEMELQEEEP
LATSTPAAALKAQQQRKLSSMEPSMDDALAIGTQMTRQVSERITCLVAKL
QASRLYTILTRTTQPAHLIAVCILAFVLMTVGRDLIDPTTTVATAEAAAS
ATAASTRTATGGVMAALVFLGAFATHFGSQIWMTFVSGLSLYFSLPRHVF
GQCQQILFPRYFALNAMLSLTMLVVYAKYFLSGWTTSAGIQMGSLALAAG
IEVVVRLYLVPPMLQLMHEKYRIEDAIGSGQEVGSLVQGDLVDCPHYQRI
HKGFRRIHMTIAIGNMTVMLTTCLQLYFLASKIRLS*

LD23009.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21856-PA 477 GF21856-PA 1..477 1..436 1495 69 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17557-PA 441 GG17557-PA 1..441 1..436 1885 88.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12899-PA 465 GH12899-PA 141..465 123..436 1137 68 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32512-PD 436 CG32512-PD 1..436 1..436 2183 100 Plus
CG32512-PA 436 CG32512-PA 1..436 1..436 2183 100 Plus
CG32512-PC 233 CG32512-PC 4..233 207..436 1163 100 Plus
CG32512-PB 208 CG32512-PB 1..208 229..436 1055 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14453-PA 466 GI14453-PA 1..466 1..436 1217 56.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:26:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16582-PA 154 GL16582-PA 1..154 283..436 789 91.6 Plus
Dper\GL16581-PA 226 GL16581-PA 1..222 1..234 378 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22297-PA 427 GA22297-PA 1..427 1..436 1344 67.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22641-PA 310 GM22641-PA 10..310 141..436 1101 75.3 Plus
Dsec\GM22641-PA 310 GM22641-PA 1..65 1..69 335 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15508-PA 202 GD15508-PA 1..202 1..207 847 92.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:26:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18788-PA 469 GJ18788-PA 1..469 1..436 1203 55.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25329-PA 504 GK25329-PA 216..504 160..436 1134 75.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15318-PA 432 GE15318-PA 1..432 1..436 1769 89.1 Plus

LD23009.hyp Sequence

Translation from 303 to 1613

> LD23009.hyp
MCHNSGIVEKNNEQQIERYMACGMPSKAVKSVKYTLKKREKKEQQRRDLE
KDLHREQQFLEELELSSSASDSSSSSSSSSVTGSDSEDSGVTETVLKSSP
SADMTTSPKVISPAPTPRSDLLRFCPRFRKLQQEQQQQMLKEMELQEEEP
LATSTPAAALKAQQQRKLSSMEPSMDDALAIGTQMTRQVSERITCLVAKL
QASRLYTILTRTTQPAHLIAVCILAFVLMTVGRDLIDPTTTVATAEAAAS
ATAASTRTATGGVMAALVFLGAFATHFGSQIWMTFVSGLSLYFSLPRHVF
GQCQQILFPRYFALNAMLSLTMLVVYAKYFLSGWTTSAGIQMGSLALAAG
IEVVVRLYLVPPMLQLMHEKYRIEDAIGSGQEVGSLVQGDLVDCPHYQRI
HKGFRRIHMTIAIGNMTVMLTTCLQLYFLASKIRLS*

LD23009.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32512-PD 436 CG32512-PD 1..436 1..436 2183 100 Plus
CG32512-PA 436 CG32512-PA 1..436 1..436 2183 100 Plus
CG32512-PC 233 CG32512-PC 4..233 207..436 1163 100 Plus
CG32512-PB 208 CG32512-PB 1..208 229..436 1055 100 Plus