Clone LD23056 Report

Search the DGRC for LD23056

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:230
Well:56
Vector:pOT2
Associated Gene/Transcriptl(2)gd1-RA
Protein status:LD23056.pep: gold
Preliminary Size:2875
Sequenced Size:2982

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4713 2001-01-01 Release 2 assignment
CG4713 2001-09-19 Blastp of sequenced clone
CG4713 2003-01-01 Sim4 clustering to Release 3
l(2)gd1 2008-04-29 Release 5.5 accounting
l(2)gd1 2008-08-15 Release 5.9 accounting
l(2)gd1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23056.complete Sequence

2982 bp (2982 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058523

> LD23056.complete
TTGTCTGCGGCTGAACTGTTGCGACGCAAAAATTTAAAGGATTTGAAAGT
CTTTATAGACTTATTTTAGTTAATAAACAGCCTCTGTGCAATCAAGGATG
TTCTCCAGAAAGAAGCCAGAGCCAGCGAAAAGAAGGCAACACGATTTATC
GCAGTTCGGTCTTACGGAAATCCCAGATGATTTTGATCCCAGCGCTGGAT
ATGGTGAGGACGATGGGGGTGACAGTGATTTGGAGGCAGAGCTTGCGGCC
ATAACCGGCGGAGAAGGAGCCAAGCCAAAGCCCAAGCCCAAAGCAAAGCT
GTTACCCGCCAGTGATTTGGACAAAATGATAGCCGACAGCTTGCGTGATG
TCAGCGACGATGATGATGATGACAATTTGGAAAGCGATCCGGATCTTCTT
GGCGAGCTGAGCGGAATCGGTGGTCTAGAGGAGGCAGAGGAAGAGGAGCC
TGTCGCACAACCGCCAGCTGCCTCTGAGGAACCCGTCCAGACCTTTCTGC
CCACGACGACTGTGGACACATTAAGCATTATCAAACAGCGCCTGGAAATG
TACAAGCAGGCCGAGGCCAATGCCAAGACTGCCGGCGATTCTGGCAAAGC
AAGGCGATTTGGAAGAGGCCTTAAGACTCTGAAAGATCTGCACAGGCAGG
CAGCGGCTGGCAAGTCCATTAACGTGGATGACATTCCACCTGAAGTCAGT
GTAAAGCCAATTGGCGGGCAGGCTCCTCCAGTGCCTGCAGAGGAGTCACC
AGCTCCTTCCACACCTGCTTCCCCTCCGCCTGTGCCTAGTCGTGCAGCTC
CAGATCCACCAACCCCCGGCACCCCCGTGGAGCCCACTACATCTGTGGCT
CCCACATCTCCCCCTAATCCTCTTGTGACGCAAATGCGCAGCCGCCAGAC
GGACTACAAAGCTGCTGCACTGCAATCTAAGCGCAGTGGTGACATATCTA
CTGCCCTTCAGTTTCTCAAAGTGGTCAAGCAATTTGACGTAGTTATAAAA
ATGTGTGAAGACGGACAGGAAGTTGATTTGAGTGACATGCCCCCTCCACC
AGCTGAGTTTCTTGAATTCCTTAAAAAAATGCAAGAAGAAGCAGCCGCAG
AAGCTGTCGCAGAACCTACTGCTGCCCCAGAACCCACACCTGTTGCTCCT
GCTCCTGTTCTAGCAGCTGCAACAAATATGTTGGAGGCTCTGCAGCAACG
TTTAGAGAAATATCAATCTGTAGAAGCGGCAGCCAAGGCAGAAAACAATA
GCGGAAAAGCAAGACGCTTTGGAAGGATTGTGAAGCAATACGAAGATGCC
ATAAAGTTGTACAAGGCAGGCAAACCAGTGCCTTACGATGAGCTGCCTGT
GCCACCAGGTTTTGGACCGCTGCCTACGGCTGATGCTGCTCCTGTCGCGC
CGACACCGTCGCTGCCCACTTCGCCTACATCTCCACCGCCAACAGCAAGT
ACTTCCGCAGGAGGAACACCCTCCAGTTCCAGTGCGACGACACCTACAGC
TCCTCGAAAAGCACCTTCACCTCCTAAGCCCAAAGAGTTAACAACACGCA
CGTCTGGCAATCAGCAGAAGAATAATATTGCCGAGCAACAAATGAAACTG
CTCCTCGAGCGCCAAAAGGAGTTTAAGCTAGCTGCTATAGAGGCCAAAAA
AGCGGGAGAAATAGATCAGGCGAAGGAGTACCTCAAGATCTTCAAGGGAT
TCGATTCCCTTCTTAATGCAGCGAGTAGTGGATTGCCAGTGGACCTCAGC
ACTCTTCCCGTCCCGCCTTCACAAAGGGATAATCTAGAAGCCTCCTTTGC
CATTGTATCTGCTGAGGAATGCGATCCGACAGATGATATCTGTGAAATTG
GTGTTCGCATGGAGGAGCAGCTGGCAAAACAACTGATGATGTGCAAAAAT
ACGCGAGATCATCACAAAGCTATGGGAGATGTAGCAGGCATGAATCGGTT
TGAAAATTTAGCCTTAACTGTGCAAAAGGATTTGGATTTGGTGCGATACT
CGAAACGAAAGAATGAACCACTGCCAAAGTTTCACTATGAAAAGCGTAGC
TTCAACATTGTGCATTGCAACACAGATCTCACAGACAGTGAGCTTGAAAT
TGTTGTGGTCCGGGGAATCAGCTACAATGTGGCCAATCCCAAGGACGTGG
ATACTTATGTGCGCGTAGAGTTTCCCCTGCTCAATGATGAATCTTTCAAG
ACTAAAACCAATGTTATCAGAGACACCAGCAGTCCTGACTACGATGAACG
CTTCAAGGTTGACATCCAGCGGACCAATCGTCAGTTCCAGAGAATCTTTA
AGCGGCATGGCGTCAAGTTTGAAATATACTCTAGAGGAGGTTTTCTGCGA
TCGGATACGTTGATCGGAACCGTAAATGTCAAGCTGCAGCCATTGGAGAC
CAAGTGCGAGATACACGACACATATGATCTAATGGATGGTCGCAAGCAAG
TAGGTGGAAAATTGGAAGTCAAGATACGCGTTCGCAATCCTATTCTCACC
AAGCAAATGGAGCACATCACCGAAAAGTGGTTGGTCTTGGATGCCTAGGG
CTAAACAAGAAAATTTAAATAAAATAGGAACGCGTCCCCTTGCGATTGTT
CTCGATTAAGTCACTAAGTTATTTGTTTGTAAATATCCCTCACAGAAAAT
TCAATTTATCTAAGTATGTACGCTTTTGCCGATTCCTTCGCAGGAAGAAG
GCATTTATATATTACGAACACAACACATATAATGTACTATAAATATCTTT
ATATATAAATAATATATGTATATATGATATTGCCGGCGTTAAGGCGAAGG
CGCAAGTCCAGAAGATTGTGCCGGTGAAGTCAGTCCATTCCAAGAGAGAC
AGATTGAGAGTAGGATCGGTCCACTAGCGCCTAGCCGAAACCTGATTATG
TTAGCTTTCACATTGCATAAATATTTTCTTTTGATTTATAAACTGTTTGT
TGAACTACAACTCCAAAAAAAAAAAAAAAAAA

LD23056.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)gd1-RA 3161 l(2)gd1-RA 166..3130 1..2965 14825 100 Plus
l(2)gd1.a 3107 l(2)gd1.a 58..2394 1..2337 11685 100 Plus
l(2)gd1.a 3107 l(2)gd1.a 2448..3076 2337..2965 3145 100 Plus
CG6201.a 2264 CG6201.a 1969..2264 2965..2670 1480 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11105961..11107561 153..1753 8005 100 Plus
chr2L 23010047 chr2L 11109070..11109605 2429..2964 2680 100 Plus
chr2L 23010047 chr2L 11107620..11108052 1754..2186 2165 100 Plus
chr2L 23010047 chr2L 11105722..11105875 1..154 770 100 Plus
chr2L 23010047 chr2L 11108110..11108261 2186..2337 760 100 Plus
chr2L 23010047 chr2L 11108912..11109007 2337..2432 465 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11107207..11108807 153..1753 8005 100 Plus
2L 23513712 2L 11110316..11110852 2429..2965 2685 100 Plus
2L 23513712 2L 11108866..11109298 1754..2186 2165 100 Plus
2L 23513712 2L 11106968..11107121 1..154 770 100 Plus
2L 23513712 2L 11109356..11109507 2186..2337 760 100 Plus
2L 23513712 2L 11110158..11110253 2337..2432 465 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11107207..11108807 153..1753 8005 100 Plus
2L 23513712 2L 11110316..11110852 2429..2965 2685 100 Plus
2L 23513712 2L 11108866..11109298 1754..2186 2165 100 Plus
2L 23513712 2L 11106968..11107121 1..154 770 100 Plus
2L 23513712 2L 11109356..11109507 2186..2337 760 100 Plus
2L 23513712 2L 11110158..11110253 2337..2432 465 98.9 Plus
Blast to na_te.dros performed 2019-03-16 19:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 6335..6381 1216..1170 118 72.3 Minus

LD23056.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:29:47 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11108913..11109003 2338..2428 100 -> Plus
chr2L 11109070..11109363 2429..2722 100 == Plus
chr2L 11109422..11109605 2781..2964 100   Plus
chr2L 11105722..11105875 1..154 100 -> Plus
chr2L 11105963..11107561 155..1753 100 -> Plus
chr2L 11107620..11108051 1754..2185 100 -> Plus
chr2L 11108110..11108261 2186..2337 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:35 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 1..2451 98..2548 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:47 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 1..2451 98..2548 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:34 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 1..2451 98..2548 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:23 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 1..2451 98..2548 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:21 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 1..2451 98..2548 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:32 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 17..2980 1..2964 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:46 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 17..2980 1..2964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:34 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 26..2989 1..2964 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:23 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 17..2980 1..2964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:21 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)gd1-RA 26..2989 1..2964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:47 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11106968..11107121 1..154 100 -> Plus
2L 11107209..11108807 155..1753 100 -> Plus
2L 11108866..11109297 1754..2185 100 -> Plus
2L 11109356..11109507 2186..2337 100 -> Plus
2L 11110159..11110249 2338..2428 100 -> Plus
2L 11110316..11110851 2429..2964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:47 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11106968..11107121 1..154 100 -> Plus
2L 11107209..11108807 155..1753 100 -> Plus
2L 11108866..11109297 1754..2185 100 -> Plus
2L 11109356..11109507 2186..2337 100 -> Plus
2L 11110159..11110249 2338..2428 100 -> Plus
2L 11110316..11110851 2429..2964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:47 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11106968..11107121 1..154 100 -> Plus
2L 11107209..11108807 155..1753 100 -> Plus
2L 11108866..11109297 1754..2185 100 -> Plus
2L 11109356..11109507 2186..2337 100 -> Plus
2L 11110159..11110249 2338..2428 100 -> Plus
2L 11110316..11110851 2429..2964 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:34 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11106968..11107121 1..154 100 -> Plus
arm_2L 11107209..11108807 155..1753 100 -> Plus
arm_2L 11108866..11109297 1754..2185 100 -> Plus
arm_2L 11109356..11109507 2186..2337 100 -> Plus
arm_2L 11110159..11110249 2338..2428 100 -> Plus
arm_2L 11110316..11110851 2429..2964 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:16 Download gff for LD23056.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11106968..11107121 1..154 100 -> Plus
2L 11107209..11108807 155..1753 100 -> Plus
2L 11108866..11109297 1754..2185 100 -> Plus
2L 11109356..11109507 2186..2337 100 -> Plus
2L 11110159..11110249 2338..2428 100 -> Plus
2L 11110316..11110851 2429..2964 100   Plus

LD23056.pep Sequence

Translation from 97 to 2547

> LD23056.pep
MFSRKKPEPAKRRQHDLSQFGLTEIPDDFDPSAGYGEDDGGDSDLEAELA
AITGGEGAKPKPKPKAKLLPASDLDKMIADSLRDVSDDDDDDNLESDPDL
LGELSGIGGLEEAEEEEPVAQPPAASEEPVQTFLPTTTVDTLSIIKQRLE
MYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAGKSINVDDIPPEV
SVKPIGGQAPPVPAEESPAPSTPASPPPVPSRAAPDPPTPGTPVEPTTSV
APTSPPNPLVTQMRSRQTDYKAAALQSKRSGDISTALQFLKVVKQFDVVI
KMCEDGQEVDLSDMPPPPAEFLEFLKKMQEEAAAEAVAEPTAAPEPTPVA
PAPVLAAATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYED
AIKLYKAGKPVPYDELPVPPGFGPLPTADAAPVAPTPSLPTSPTSPPPTA
STSAGGTPSSSSATTPTAPRKAPSPPKPKELTTRTSGNQQKNNIAEQQMK
LLLERQKEFKLAAIEAKKAGEIDQAKEYLKIFKGFDSLLNAASSGLPVDL
STLPVPPSQRDNLEASFAIVSAEECDPTDDICEIGVRMEEQLAKQLMMCK
NTRDHHKAMGDVAGMNRFENLALTVQKDLDLVRYSKRKNEPLPKFHYEKR
SFNIVHCNTDLTDSELEIVVVRGISYNVANPKDVDTYVRVEFPLLNDESF
KTKTNVIRDTSSPDYDERFKVDIQRTNRQFQRIFKRHGVKFEIYSRGGFL
RSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEVKIRVRNPIL
TKQMEHITEKWLVLDA*

LD23056.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15641-PA 816 GF15641-PA 1..814 1..816 3076 80.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23706-PA 816 GG23706-PA 1..816 1..816 3557 93.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10307-PA 828 GH10307-PA 1..828 1..816 2988 76.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)gd1-PA 816 CG4713-PA 1..816 1..816 4203 100 Plus
l(2)gd1-PB 834 CG4713-PB 1..834 1..816 4174 97.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17069-PA 838 GI17069-PA 1..836 1..816 2951 75.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19542-PA 793 GL19542-PA 1..791 1..816 3064 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18377-PA 814 GA18377-PA 1..812 1..816 3199 83.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18896-PA 816 GM18896-PA 1..816 1..816 4172 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23762-PA 836 GD23762-PA 1..836 1..816 4152 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10553-PA 821 GJ10553-PA 1..819 1..816 3110 80.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18364-PA 817 GK18364-PA 1..815 1..816 3105 77.9 Plus
Dwil\GK20266-PA 387 GK20266-PA 1..385 1..383 1202 69.3 Plus
Dwil\GK20266-PA 387 GK20266-PA 125..318 332..559 250 32 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18513-PA 816 GE18513-PA 1..816 1..816 3430 95.1 Plus

LD23056.hyp Sequence

Translation from 97 to 2547

> LD23056.hyp
MFSRKKPEPAKRRQHDLSQFGLTEIPDDFDPSAGYGEDDGGDSDLEAELA
AITGGEGAKPKPKPKAKLLPASDLDKMIADSLRDVSDDDDDDNLESDPDL
LGELSGIGGLEEAEEEEPVAQPPAASEEPVQTFLPTTTVDTLSIIKQRLE
MYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAGKSINVDDIPPEV
SVKPIGGQAPPVPAEESPAPSTPASPPPVPSRAAPDPPTPGTPVEPTTSV
APTSPPNPLVTQMRSRQTDYKAAALQSKRSGDISTALQFLKVVKQFDVVI
KMCEDGQEVDLSDMPPPPAEFLEFLKKMQEEAAAEAVAEPTAAPEPTPVA
PAPVLAAATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYED
AIKLYKAGKPVPYDELPVPPGFGPLPTADAAPVAPTPSLPTSPTSPPPTA
STSAGGTPSSSSATTPTAPRKAPSPPKPKELTTRTSGNQQKNNIAEQQMK
LLLERQKEFKLAAIEAKKAGEIDQAKEYLKIFKGFDSLLNAASSGLPVDL
STLPVPPSQRDNLEASFAIVSAEECDPTDDICEIGVRMEEQLAKQLMMCK
NTRDHHKAMGDVAGMNRFENLALTVQKDLDLVRYSKRKNEPLPKFHYEKR
SFNIVHCNTDLTDSELEIVVVRGISYNVANPKDVDTYVRVEFPLLNDESF
KTKTNVIRDTSSPDYDERFKVDIQRTNRQFQRIFKRHGVKFEIYSRGGFL
RSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEVKIRVRNPIL
TKQMEHITEKWLVLDA*

LD23056.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)gd1-PA 816 CG4713-PA 1..816 1..816 4203 100 Plus
l(2)gd1-PB 834 CG4713-PB 1..834 1..816 4174 97.8 Plus