Clone LD23072 Report

Search the DGRC for LD23072

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:230
Well:72
Vector:pOT2
Associated Gene/Transcriptpasha-RA
Protein status:LD23072.pep: gold
Preliminary Size:2942
Sequenced Size:2859

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1800 2001-01-01 Release 2 assignment
CG1800 2001-09-19 Blastp of sequenced clone
CG1800 2003-01-01 Sim4 clustering to Release 3
pasha 2008-04-29 Release 5.5 accounting
pasha 2008-08-15 Release 5.9 accounting
pasha 2008-12-18 5.12 accounting

Clone Sequence Records

LD23072.complete Sequence

2859 bp (2859 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058524

> LD23072.complete
TGGTCACACTGTCTTGCACTAAATAAATTAGGGGGCGTCTTTAAATTGCA
AAATTTCTTGCAAAATCAGTAGAAAAGTGCTTGGAGCTGCTGTTACAATA
GATCCTAAGACCAAACGTTCTTCTCCGGAGGATAATACCTGGAACCATCA
CTAACCCCAATTCAAAAGTGTCAATCTGTTTCCGCAAAACTGCATGTGGT
GTTTGTTTCGCTTGTTTGGTTATTTTTCCCAACTAACATCCTCTCTCTAA
AATCTCGATTTCGTACTTGAATTGCGCAGCTTTTGCTTTGGGATTTTGTC
CGACAATTAGGCAGAATCCATAGCGAAAGACGCAGCAAGTAGCATCGTTT
ACAATCCGCGAAAGTGCAGTCGCAGAATTTTCCGGCGGGGCTTCTGGCTT
AACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCT
CTCAGTATTGGTTATTGGCGAGATTGGCTCCGGGACAGCATTACTAGACA
GTTCCGATCAGTCCGCACTAAACCCCTCCCGCTTTAGACACACACATCCA
ATACAATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACTCTGGGCAGGTC
CGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTCAAGGTGGCCGG
CTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAGGGACAACGAGC
TGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCCAGGTTCTCGAC
GAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGACAACGCTAGCGA
GCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGAGGAAGAGGCGG
CTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCGATGATGACGAG
ATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTCCGCGAGTCAAA
GCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGAAGAAAAGCGCC
TCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGGTGACCCACAAC
AGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTCTGTTGCGCATC
GAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCATGCAGTGCCCT
TGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGGAGGAAGAGTCG
GAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTGGCTGTATGTCC
CATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGACGTGGAGGGAA
AAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAACCAGATGGAATA
ACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAACGAGAATACCCA
AAAGGAATCCATTACACCGGAGCAACTAAACACCTACTGCCAGAAACTCT
TCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTTGGAATGCTCGC
CGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATTCAACGACCCAC
GCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACTAGCGAATGCTG
GCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGATCATGAATCCC
AATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTGCAGCATGCTCT
GAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAACGCAGCCACGC
CTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATGGCACGGGCTAT
GGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGGGAAACGCTGGA
AATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAACAATAAGGACC
AAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGTCTGTTTTCGAT
GACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGCAACAAGACGAC
GGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCAGCGCAACTACG
GCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCGCGAATAACAAG
AACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAAGTGGTGTGTAA
AAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAATCCTCCAGATTT
TGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCCTCTACGGCAAC
AACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAGCAGGAGATCAC
CGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTACGCCATACTGG
ACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGCAGGAGAGCGTC
CTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGATCTGCCCACTTC
CTCCGGGTCCAATTTGAACAACGTGGAACTTTGATTGGGAAACACACATC
TCTCTCGCCAACATTGATTCTCTAGTAGTGCATGACAACCTCCTAGTCTC
TTAGTTACCCACCCATTTCCATATTCGAAAAGCTAATGACAACAACGACG
CGTTCTCTAGAGGCATACGAACTGATTTCAAATCGGCTTCATCTATCTGA
GCTGGTTAATCTGAAGTGGCTTTAGCAAGTGGCCAAAAATGAAGAACAAT
TGCCTATCAAGTGGTTTTACATTAAGGTAAATTCATCACTAAATTTGCCA
AATATAAGTAGTTCATGCTTGCAATAGCTAAGATTAGGGGTTCAATTTCA
CTTGTATAATATAAGCTTGAATAAAATACTATTAAAAACGCAAAAAAAAA
AAAAAAAAA

LD23072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RA 2902 pasha-RA 18..2859 1..2842 14195 99.9 Plus
pasha.a 2167 pasha.a 65..2124 783..2842 10300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27441891..27442844 990..1943 4725 99.7 Plus
chr3R 27901430 chr3R 27440366..27441152 1..787 3920 99.9 Plus
chr3R 27901430 chr3R 27443210..27443857 2194..2841 3225 99.8 Plus
chr3R 27901430 chr3R 27442899..27443153 1942..2196 1275 100 Plus
chr3R 27901430 chr3R 27441621..27441827 785..991 1035 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31619508..31620461 990..1943 4770 100 Plus
3R 32079331 3R 31617983..31618769 1..787 3920 99.9 Plus
3R 32079331 3R 31620827..31621475 2194..2842 3245 100 Plus
3R 32079331 3R 31620516..31620770 1942..2196 1275 100 Plus
3R 32079331 3R 31619238..31619444 785..991 1035 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31360339..31361292 990..1943 4770 100 Plus
3R 31820162 3R 31358814..31359600 1..787 3920 99.8 Plus
3R 31820162 3R 31361658..31362306 2194..2842 3245 100 Plus
3R 31820162 3R 31361347..31361601 1942..2196 1275 100 Plus
3R 31820162 3R 31360069..31360275 785..991 1035 100 Plus
Blast to na_te.dros performed on 2019-03-16 09:34:53 has no hits.

LD23072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:36:07 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27441624..27441827 788..991 100 -> Plus
chr3R 27440366..27441152 1..787 99 -> Plus
chr3R 27441893..27442842 992..1941 99 -> Plus
chr3R 27442899..27443153 1942..2196 100 -> Plus
chr3R 27443213..27443857 2197..2841 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:36 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 556..2484 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:48 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 556..2484 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:02:40 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 556..2484 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:24 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 556..2484 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:13:42 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 556..2484 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:34 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 7..2847 1..2841 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:48 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 7..2847 1..2841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:02:40 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 7..2847 1..2841 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:24 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 7..2847 1..2841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:13:42 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 7..2847 1..2841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:07 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31617983..31618769 1..787 99 -> Plus
3R 31619241..31619444 788..991 100 -> Plus
3R 31619510..31620459 992..1941 100 -> Plus
3R 31620516..31620770 1942..2196 100 -> Plus
3R 31620830..31621474 2197..2841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:07 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31617983..31618769 1..787 99 -> Plus
3R 31619241..31619444 788..991 100 -> Plus
3R 31619510..31620459 992..1941 100 -> Plus
3R 31620516..31620770 1942..2196 100 -> Plus
3R 31620830..31621474 2197..2841 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:07 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31617983..31618769 1..787 99 -> Plus
3R 31619241..31619444 788..991 100 -> Plus
3R 31619510..31620459 992..1941 100 -> Plus
3R 31620516..31620770 1942..2196 100 -> Plus
3R 31620830..31621474 2197..2841 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:02:40 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27443705..27444491 1..787 99 -> Plus
arm_3R 27444963..27445166 788..991 100 -> Plus
arm_3R 27445232..27446181 992..1941 100 -> Plus
arm_3R 27446238..27446492 1942..2196 100 -> Plus
arm_3R 27446552..27447196 2197..2841 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:18 Download gff for LD23072.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31361347..31361601 1942..2196 100 -> Plus
3R 31358814..31359600 1..787 99 -> Plus
3R 31360072..31360275 788..991 100 -> Plus
3R 31360341..31361290 992..1941 100 -> Plus
3R 31361661..31362305 2197..2841 100   Plus

LD23072.pep Sequence

Translation from 555 to 2483

> LD23072.pep
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*

LD23072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22976-PA 649 GF22976-PA 7..649 10..642 2976 87.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11821-PA 642 GG11821-PA 1..642 1..642 3366 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18644-PA 654 GH18644-PA 17..654 7..642 2673 80.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-PC 642 CG1800-PC 1..642 1..642 3334 100 Plus
pasha-PA 642 CG1800-PA 1..642 1..642 3334 100 Plus
pasha-PB 580 CG1800-PB 15..580 77..642 2946 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23404-PA 655 GI23404-PA 22..655 17..642 2629 81.5 Plus
Dmoj\GI23123-PA 94 GI23123-PA 34..79 153..198 242 91.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23989-PA 387 GL23989-PA 4..387 258..642 1906 92.2 Plus
Dper\GL23988-PA 219 GL23988-PA 11..211 16..232 444 55.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14761-PA 651 GA14761-PA 18..651 16..642 2762 84.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16438-PA 642 GM16438-PA 1..642 1..642 3381 97.8 Plus
Dsec\GM19663-PA 267 GM19663-PA 1..267 376..642 1414 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21592-PA 642 GD21592-PA 1..642 1..642 3408 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23095-PA 659 GJ23095-PA 19..659 15..642 2781 83.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12111-PA 649 GK12111-PA 25..649 17..642 2853 86.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10954-PA 643 GE10954-PA 1..643 1..642 3340 96.7 Plus

LD23072.hyp Sequence

Translation from 555 to 2483

> LD23072.hyp
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*

LD23072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-PC 642 CG1800-PC 1..642 1..642 3334 100 Plus
pasha-PA 642 CG1800-PA 1..642 1..642 3334 100 Plus
pasha-PB 580 CG1800-PB 15..580 77..642 2946 100 Plus