BDGP Sequence Production Resources |
Search the DGRC for LD23072
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 230 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | pasha-RA |
Protein status: | LD23072.pep: gold |
Preliminary Size: | 2942 |
Sequenced Size: | 2859 |
Gene | Date | Evidence |
---|---|---|
CG1800 | 2001-01-01 | Release 2 assignment |
CG1800 | 2001-09-19 | Blastp of sequenced clone |
CG1800 | 2003-01-01 | Sim4 clustering to Release 3 |
pasha | 2008-04-29 | Release 5.5 accounting |
pasha | 2008-08-15 | Release 5.9 accounting |
pasha | 2008-12-18 | 5.12 accounting |
2859 bp (2859 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058524
> LD23072.complete TGGTCACACTGTCTTGCACTAAATAAATTAGGGGGCGTCTTTAAATTGCA AAATTTCTTGCAAAATCAGTAGAAAAGTGCTTGGAGCTGCTGTTACAATA GATCCTAAGACCAAACGTTCTTCTCCGGAGGATAATACCTGGAACCATCA CTAACCCCAATTCAAAAGTGTCAATCTGTTTCCGCAAAACTGCATGTGGT GTTTGTTTCGCTTGTTTGGTTATTTTTCCCAACTAACATCCTCTCTCTAA AATCTCGATTTCGTACTTGAATTGCGCAGCTTTTGCTTTGGGATTTTGTC CGACAATTAGGCAGAATCCATAGCGAAAGACGCAGCAAGTAGCATCGTTT ACAATCCGCGAAAGTGCAGTCGCAGAATTTTCCGGCGGGGCTTCTGGCTT AACCAATGTGGCACTTCCAATGAGAAATCAATTGCAAGGCGTTGGATGCT CTCAGTATTGGTTATTGGCGAGATTGGCTCCGGGACAGCATTACTAGACA GTTCCGATCAGTCCGCACTAAACCCCTCCCGCTTTAGACACACACATCCA ATACAATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACTCTGGGCAGGTC CGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTCAAGGTGGCCGG CTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAGGGACAACGAGC TGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCCAGGTTCTCGAC GAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGACAACGCTAGCGA GCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGAGGAAGAGGCGG CTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCGATGATGACGAG ATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTCCGCGAGTCAAA GCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGAAGAAAAGCGCC TCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGGTGACCCACAAC AGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTCTGTTGCGCATC GAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCATGCAGTGCCCT TGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGGAGGAAGAGTCG GAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTGGCTGTATGTCC CATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGACGTGGAGGGAA AAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAACCAGATGGAATA ACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAACGAGAATACCCA AAAGGAATCCATTACACCGGAGCAACTAAACACCTACTGCCAGAAACTCT TCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTTGGAATGCTCGC CGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATTCAACGACCCAC GCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACTAGCGAATGCTG GCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGATCATGAATCCC AATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTGCAGCATGCTCT GAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAACGCAGCCACGC CTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATGGCACGGGCTAT GGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGGGAAACGCTGGA AATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAACAATAAGGACC AAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGTCTGTTTTCGAT GACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGCAACAAGACGAC GGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCAGCGCAACTACG GCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCGCGAATAACAAG AACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAAGTGGTGTGTAA AAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAATCCTCCAGATTT TGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCCTCTACGGCAAC AACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAGCAGGAGATCAC CGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTACGCCATACTGG ACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGCAGGAGAGCGTC CTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGATCTGCCCACTTC CTCCGGGTCCAATTTGAACAACGTGGAACTTTGATTGGGAAACACACATC TCTCTCGCCAACATTGATTCTCTAGTAGTGCATGACAACCTCCTAGTCTC TTAGTTACCCACCCATTTCCATATTCGAAAAGCTAATGACAACAACGACG CGTTCTCTAGAGGCATACGAACTGATTTCAAATCGGCTTCATCTATCTGA GCTGGTTAATCTGAAGTGGCTTTAGCAAGTGGCCAAAAATGAAGAACAAT TGCCTATCAAGTGGTTTTACATTAAGGTAAATTCATCACTAAATTTGCCA AATATAAGTAGTTCATGCTTGCAATAGCTAAGATTAGGGGTTCAATTTCA CTTGTATAATATAAGCTTGAATAAAATACTATTAAAAACGCAAAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 27441891..27442844 | 990..1943 | 4725 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 27440366..27441152 | 1..787 | 3920 | 99.9 | Plus |
chr3R | 27901430 | chr3R | 27443210..27443857 | 2194..2841 | 3225 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 27442899..27443153 | 1942..2196 | 1275 | 100 | Plus |
chr3R | 27901430 | chr3R | 27441621..27441827 | 785..991 | 1035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 31619508..31620461 | 990..1943 | 4770 | 100 | Plus |
3R | 32079331 | 3R | 31617983..31618769 | 1..787 | 3920 | 99.9 | Plus |
3R | 32079331 | 3R | 31620827..31621475 | 2194..2842 | 3245 | 100 | Plus |
3R | 32079331 | 3R | 31620516..31620770 | 1942..2196 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 31619238..31619444 | 785..991 | 1035 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 31360339..31361292 | 990..1943 | 4770 | 100 | Plus |
3R | 31820162 | 3R | 31358814..31359600 | 1..787 | 3920 | 99.8 | Plus |
3R | 31820162 | 3R | 31361658..31362306 | 2194..2842 | 3245 | 100 | Plus |
3R | 31820162 | 3R | 31361347..31361601 | 1942..2196 | 1275 | 100 | Plus |
3R | 31820162 | 3R | 31360069..31360275 | 785..991 | 1035 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 27441624..27441827 | 788..991 | 100 | -> | Plus |
chr3R | 27440366..27441152 | 1..787 | 99 | -> | Plus |
chr3R | 27441893..27442842 | 992..1941 | 99 | -> | Plus |
chr3R | 27442899..27443153 | 1942..2196 | 100 | -> | Plus |
chr3R | 27443213..27443857 | 2197..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 1..1929 | 556..2484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 1..1929 | 556..2484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 1..1929 | 556..2484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 1..1929 | 556..2484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 1..1929 | 556..2484 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 7..2847 | 1..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 7..2847 | 1..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 7..2847 | 1..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 7..2847 | 1..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pasha-RA | 7..2847 | 1..2841 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31617983..31618769 | 1..787 | 99 | -> | Plus |
3R | 31619241..31619444 | 788..991 | 100 | -> | Plus |
3R | 31619510..31620459 | 992..1941 | 100 | -> | Plus |
3R | 31620516..31620770 | 1942..2196 | 100 | -> | Plus |
3R | 31620830..31621474 | 2197..2841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31617983..31618769 | 1..787 | 99 | -> | Plus |
3R | 31619241..31619444 | 788..991 | 100 | -> | Plus |
3R | 31619510..31620459 | 992..1941 | 100 | -> | Plus |
3R | 31620516..31620770 | 1942..2196 | 100 | -> | Plus |
3R | 31620830..31621474 | 2197..2841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31617983..31618769 | 1..787 | 99 | -> | Plus |
3R | 31619241..31619444 | 788..991 | 100 | -> | Plus |
3R | 31619510..31620459 | 992..1941 | 100 | -> | Plus |
3R | 31620516..31620770 | 1942..2196 | 100 | -> | Plus |
3R | 31620830..31621474 | 2197..2841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 27443705..27444491 | 1..787 | 99 | -> | Plus |
arm_3R | 27444963..27445166 | 788..991 | 100 | -> | Plus |
arm_3R | 27445232..27446181 | 992..1941 | 100 | -> | Plus |
arm_3R | 27446238..27446492 | 1942..2196 | 100 | -> | Plus |
arm_3R | 27446552..27447196 | 2197..2841 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 31361347..31361601 | 1942..2196 | 100 | -> | Plus |
3R | 31358814..31359600 | 1..787 | 99 | -> | Plus |
3R | 31360072..31360275 | 788..991 | 100 | -> | Plus |
3R | 31360341..31361290 | 992..1941 | 100 | -> | Plus |
3R | 31361661..31362305 | 2197..2841 | 100 | Plus |
Translation from 555 to 2483
> LD23072.pep MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22976-PA | 649 | GF22976-PA | 7..649 | 10..642 | 2976 | 87.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11821-PA | 642 | GG11821-PA | 1..642 | 1..642 | 3366 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18644-PA | 654 | GH18644-PA | 17..654 | 7..642 | 2673 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pasha-PC | 642 | CG1800-PC | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PA | 642 | CG1800-PA | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PB | 580 | CG1800-PB | 15..580 | 77..642 | 2946 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23404-PA | 655 | GI23404-PA | 22..655 | 17..642 | 2629 | 81.5 | Plus |
Dmoj\GI23123-PA | 94 | GI23123-PA | 34..79 | 153..198 | 242 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23989-PA | 387 | GL23989-PA | 4..387 | 258..642 | 1906 | 92.2 | Plus |
Dper\GL23988-PA | 219 | GL23988-PA | 11..211 | 16..232 | 444 | 55.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14761-PA | 651 | GA14761-PA | 18..651 | 16..642 | 2762 | 84.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16438-PA | 642 | GM16438-PA | 1..642 | 1..642 | 3381 | 97.8 | Plus |
Dsec\GM19663-PA | 267 | GM19663-PA | 1..267 | 376..642 | 1414 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21592-PA | 642 | GD21592-PA | 1..642 | 1..642 | 3408 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23095-PA | 659 | GJ23095-PA | 19..659 | 15..642 | 2781 | 83.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12111-PA | 649 | GK12111-PA | 25..649 | 17..642 | 2853 | 86.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10954-PA | 643 | GE10954-PA | 1..643 | 1..642 | 3340 | 96.7 | Plus |
Translation from 555 to 2483
> LD23072.hyp MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pasha-PC | 642 | CG1800-PC | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PA | 642 | CG1800-PA | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PB | 580 | CG1800-PB | 15..580 | 77..642 | 2946 | 100 | Plus |