Clone LD23129 Report

Search the DGRC for LD23129

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:231
Well:29
Vector:pOT2
Associated Gene/TranscriptLst8-RA
Protein status:LD23129.pep: gold
Preliminary Size:1812
Sequenced Size:1758

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3004 2001-01-01 Release 2 assignment
CG3004 2001-10-10 Blastp of sequenced clone
CG3004 2003-01-01 Sim4 clustering to Release 3
CG3004 2008-04-29 Release 5.5 accounting
CG3004 2008-08-15 Release 5.9 accounting
CG3004 2008-12-18 5.12 accounting

Clone Sequence Records

LD23129.complete Sequence

1758 bp (1758 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061311

> LD23129.complete
ATAGGTCTGGTGAAATGAAAACATTGGGGCAAAAAAACGCGGAAATTGTC
AATTAATCTGTGCAATCACAGGATGGGGGACCAACAGCAGCTGATCCTGG
CCACCGGTGGTTATGACCACACCATTAAGGTGTGGCAGGCGCACACGGGC
AACTGCATTAAGACGATGAGATTCGTGGAGACCTCGCAAGTGAATGCGCT
AGACAGGACACCGGATAAGACGCGACTGGCGGCGTGCGGATACCAGTGCA
TCCGGCTGTACGACCTGGAGTCCAACTGCACCGCACCGGTGATCAATTTC
GATGGCGTGCAAAAGAATGTGACGCGACTTGGCTTCCAAGAGGACGGCAA
TTGGATGTTCACCGCCGGCGAGGATCATCACGTGCGGATCTGGGACATGA
TTGCCGCACCGCCACACTGTTCCCGGATCTTTGATTGTGAGGCGCCGGTA
AATGCCGCCTGTTTGCATCCCAACCAGGTGGAGATCGCCATGGGCTCACA
AAATGGCAGCGTCTTTCTGTGGGACGTCAAGTCGGAGCGGCACGAACGCA
TCGTGCCCGAGGTGGACGCATCCATTCAGGATGTTGCCATCTCGCCGGAT
GGCAGATACTTGGCGGCGGCCAATAACAAGGGCAACTGCTACATCTGGTC
GCTGACCAGTCAGGATCAGAAGATGAGCACGCTGCGGCCGAACAGGAAAA
TTCCGGCCCACTCTCGCTACATACTGCGCTGCAAATTCAGTCCCGATTCC
AGGCTACTGCTGACGACATCCGGCGATGGCACTGTGTGCATTTGGAAGAC
GGATGACTTTAGCAAATGGCGCGAGCTGTGCATCGAGAACTATTGGGTGT
GGGATGCCGCCTTTAGCGCCGATTCTAAATGGCTGTTCACAGCCTCATCC
GACGGCATTGCACGACTGTGGAAGCTGCAGACAAAGAGTTCGATTAGGGA
TTATACTGGTCACACCAAGGCCATCACTGCCCTGTCCTTCAAGGACGAGA
TCGTGGGCAAATAGCAGTAGTTGTAGTAGTAGTAGTAGTAGCTAGCGGCT
AGAGTCTAGGCACTTTGTAAGTGGCTCCTGGTGGCGGATTTTCATTTGGC
TTTCCCCAAAGATTGGCCTACTAGTTTTAGTCATTCTACCAATTAGCTGG
CTTAAGTCCACACAAAATGAATGGCAATTGTAATGGTTTGTTAAGCATCG
CGGTTTTAGTTTCTACTCTTAATTAGACTCAATGTTTTAGTTCAGCTTAC
GTTTCCCAATTAGATGCATATATATAAAATGGTAATTCATAGTCTCAAAA
AAATTGATATCCTTAATGTTTGAAAAACTGCCAGCAGTGCTCATTAATTC
ACTTCCGAACTTAATTACGATCTATCTTAAGCCAGTTAAATCAACAAATA
TCTCAGATGTACAATCATCCGCAAAACCGCCAACCCAGCGAGACAATCCG
CCAGGAACAAATAATTTGGCATTTTTTGAAACAGTGGGGAGAGTAGCAAT
GAATCCATATATGGGCAACACGACAACTGAACTGAACTGAAGCATCAACT
AAAACAACATCCACACAACAATTGAACAGATTAATGAGAATACCTCTGAA
AATGAGCGCTTGGCTTTTGTAGCGACTTTTTCATAATTTATAAACCTTTG
ATACATAATTATATTACGACTAAATCGTTTGTATGCAAAATGCAATTTGA
ATAAAAATCTTATCAGCGTACATACACATACAATACAGAAAAAAAAAAAA
AAAAAAAA

LD23129.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3004-RA 1909 CG3004-RA 125..1865 1..1741 8705 100 Plus
Gga-RB 2488 Gga-RB 2344..2488 1741..1597 725 100 Minus
Gga.b 2200 Gga.b 2069..2200 1741..1610 660 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9495869..9497421 1738..186 7765 100 Minus
chrX 22417052 chrX 9497477..9497662 186..1 930 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9604151..9605706 1741..186 7780 100 Minus
X 23542271 X 9605762..9605947 186..1 930 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9612249..9613804 1741..186 7780 100 Minus
X 23527363 X 9613860..9614045 186..1 930 100 Minus
Blast to na_te.dros performed 2019-03-16 04:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
G5A 2841 G5A G5A 2841bp 2026..2075 88..137 124 72 Plus

LD23129.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:05:07 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9495869..9497420 187..1738 98 <- Minus
chrX 9497477..9497662 1..186 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:39 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 1..942 73..1014 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:50:51 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 1..942 73..1014 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:18 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 1..942 73..1014 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:19:58 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 1..942 73..1014 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:29 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 1..942 73..1014 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:35:36 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 20..1757 1..1738 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:50:51 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 20..1757 1..1738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:18 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 23..1760 1..1738 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:19:58 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
CG3004-RA 20..1757 1..1738 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:29 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
Lst8-RA 23..1760 1..1738 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:07 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
X 9604154..9605705 187..1738 100 <- Minus
X 9605762..9605947 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:07 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
X 9604154..9605705 187..1738 100 <- Minus
X 9605762..9605947 1..186 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:07 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
X 9604154..9605705 187..1738 100 <- Minus
X 9605762..9605947 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:18 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9498187..9499738 187..1738 100 <- Minus
arm_X 9499795..9499980 1..186 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:56:38 Download gff for LD23129.complete
Subject Subject Range Query Range Percent Splice Strand
X 9612252..9613803 187..1738 100 <- Minus
X 9613860..9614045 1..186 100   Minus

LD23129.hyp Sequence

Translation from 72 to 1013

> LD23129.hyp
MGDQQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKT
RLAACGYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGE
DHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQVEIAMGSQNGSVFLW
DVKSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQDQK
MSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWR
ELCIENYWVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKA
ITALSFKDEIVGK*

LD23129.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-PA 313 CG3004-PA 1..313 1..313 1699 100 Plus
CG7568-PD 467 CG7568-PD 197..467 9..284 211 25.2 Plus
CG7568-PE 482 CG7568-PE 197..467 9..284 211 25.2 Plus
U4-U6-60K-PA 553 CG6322-PA 319..552 3..244 200 25.2 Plus
wds-PB 361 CG17437-PB 112..331 78..301 193 22.7 Plus

LD23129.pep Sequence

Translation from 72 to 1013

> LD23129.pep
MGDQQQLILATGGYDHTIKVWQAHTGNCIKTMRFVETSQVNALDRTPDKT
RLAACGYQCIRLYDLESNCTAPVINFDGVQKNVTRLGFQEDGNWMFTAGE
DHHVRIWDMIAAPPHCSRIFDCEAPVNAACLHPNQVEIAMGSQNGSVFLW
DVKSERHERIVPEVDASIQDVAISPDGRYLAAANNKGNCYIWSLTSQDQK
MSTLRPNRKIPAHSRYILRCKFSPDSRLLLTTSGDGTVCIWKTDDFSKWR
ELCIENYWVWDAAFSADSKWLFTASSDGIARLWKLQTKSSIRDYTGHTKA
ITALSFKDEIVGK*

LD23129.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22378-PA 312 GF22378-PA 1..312 1..313 1607 94.9 Plus
Dana\GF22879-PA 448 GF22879-PA 177..448 9..284 219 24.7 Plus
Dana\GF23908-PA 550 GF23908-PA 314..549 2..244 205 27.1 Plus
Dana\GF22217-PA 361 GF22217-PA 63..331 31..301 189 22.8 Plus
Dana\GF11768-PA 792 GF11768-PA 355..615 48..305 188 24.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18968-PA 313 GG18968-PA 1..313 1..313 1656 97.4 Plus
Dere\GG12011-PA 467 GG12011-PA 197..467 9..284 221 27.1 Plus
Dere\GG15805-PA 552 GG15805-PA 316..551 2..244 193 25.9 Plus
Dere\GG12938-PA 361 GG12938-PA 63..331 31..301 189 22.8 Plus
Dere\GG24111-PA 787 GG24111-PA 350..610 48..305 184 22.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24634-PA 314 GH24634-PA 5..311 4..309 1411 83.1 Plus
Dgri\GH18693-PA 446 GH18693-PA 179..446 9..284 225 27.2 Plus
Dgri\GH15383-PA 559 GH15383-PA 323..558 1..244 208 27.1 Plus
Dgri\GH24921-PA 357 GH24921-PA 59..327 31..301 189 22.8 Plus
Dgri\GH22022-PA 358 GH22022-PA 121..358 8..255 178 25.2 Plus
Dgri\GH22022-PA 358 GH22022-PA 105..327 78..304 158 24.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lst8-PA 313 CG3004-PA 1..313 1..313 1699 100 Plus
CG7568-PD 467 CG7568-PD 197..467 9..284 211 25.2 Plus
CG7568-PE 482 CG7568-PE 197..467 9..284 211 25.2 Plus
U4-U6-60K-PA 553 CG6322-PA 319..552 3..244 200 25.2 Plus
wds-PB 361 CG17437-PB 112..331 78..301 193 22.7 Plus
wds-PA 361 CG17437-PA 112..331 78..301 193 22.7 Plus
CG1671-PA 787 CG1671-PA 350..610 48..305 193 23.5 Plus
Gbeta76C-PA 346 CG8770-PA 77..240 141..306 165 22.9 Plus
Gbeta13F-PH 340 CG10545-PH 70..234 138..306 162 22.5 Plus
Gbeta13F-PG 340 CG10545-PG 70..234 138..306 162 22.5 Plus
Gbeta13F-PF 340 CG10545-PF 70..234 138..306 162 22.5 Plus
Gbeta13F-PE 340 CG10545-PE 70..234 138..306 162 22.5 Plus
Gbeta13F-PC 340 CG10545-PC 70..234 138..306 162 22.5 Plus
Gbeta13F-PA 340 CG10545-PA 70..234 138..306 162 22.5 Plus
wds-PB 361 CG17437-PB 75..225 126..283 161 26.6 Plus
wds-PA 361 CG17437-PA 75..225 126..283 161 26.6 Plus
CG10459-PA 322 CG10459-PA 72..297 8..242 161 26.1 Plus
CG3909-PA 331 CG3909-PA 64..304 60..306 157 21.9 Plus
Poc1-PA 391 CG10191-PA 28..194 133..306 153 25.9 Plus
Poc1-PB 403 CG10191-PB 28..194 133..306 153 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15823-PA 315 GI15823-PA 5..314 4..312 1486 87.1 Plus
Dmoj\GI24459-PA 445 GI24459-PA 178..445 9..284 211 26.5 Plus
Dmoj\GI12988-PA 540 GI12988-PA 304..539 1..244 202 26.6 Plus
Dmoj\GI21774-PA 358 GI21774-PA 60..328 31..301 188 22.8 Plus
Dmoj\GI11805-PA 346 GI11805-PA 62..240 126..306 162 22.1 Plus
Dmoj\GI11805-PA 346 GI11805-PA 115..345 8..241 152 22.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20333-PA 315 GL20333-PA 1..312 1..313 1550 90.8 Plus
Dper\GL13584-PA 390 GL13584-PA 117..390 9..284 227 26.9 Plus
Dper\GL13093-PA 356 GL13093-PA 58..326 31..301 189 23.2 Plus
Dper\GL10096-PA 787 GL10096-PA 350..610 48..305 181 22 Plus
Dper\GL17219-PA 345 GL17219-PA 58..281 83..312 170 22 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15597-PA 315 GA15597-PA 1..312 1..313 1550 90.8 Plus
Dpse\GA20446-PA 449 GA20446-PA 176..449 9..284 228 26.9 Plus
Dpse\GA19511-PA 558 GA19511-PA 322..557 2..244 205 27.1 Plus
Dpse\GA14510-PA 356 GA14510-PA 58..326 31..301 189 23.2 Plus
Dpse\GA10650-PB 368 GA10650-PB 81..304 83..312 178 22.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11356-PA 313 GM11356-PA 1..313 1..313 1660 97.8 Plus
Dsec\GM12236-PA 446 GM12236-PA 176..446 9..284 203 25.3 Plus
Dsec\GM24327-PA 553 GM24327-PA 318..552 3..244 192 26 Plus
Dsec\GM19230-PA 361 GM19230-PA 63..331 31..301 187 22.8 Plus
Dsec\GM24417-PA 787 GM24417-PA 350..610 48..305 184 23.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16055-PA 313 GD16055-PA 1..313 1..313 1660 97.8 Plus
Dsim\GD17720-PA 446 GD17720-PA 176..446 9..284 202 25.3 Plus
Dsim\GD12400-PA 553 GD12400-PA 317..552 2..244 192 25.9 Plus
Dsim\GD16610-PA 361 GD16610-PA 63..331 31..301 187 22.8 Plus
Dsim\GD10690-PA 787 GD10690-PA 350..610 48..305 182 23.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18676-PA 315 GJ18676-PA 5..314 4..312 1498 87.7 Plus
Dvir\GJ13130-PA 541 GJ13130-PA 305..540 1..244 209 27 Plus
Dvir\GJ16947-PA 358 GJ16947-PA 60..328 31..301 189 22.8 Plus
Dvir\GJ10548-PA 431 GJ10548-PA 178..431 9..284 177 24 Plus
Dvir\GJ13508-PA 346 GJ13508-PA 62..240 126..306 168 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25539-PA 311 GK25539-PA 3..311 6..313 1532 91.3 Plus
Dwil\GK11178-PA 453 GK11178-PA 180..453 9..284 226 25.6 Plus
Dwil\GK18046-PA 583 GK18046-PA 348..582 3..244 206 27.1 Plus
Dwil\GK20642-PA 791 GK20642-PA 354..617 48..308 192 24 Plus
Dwil\GK19997-PA 358 GK19997-PA 60..328 31..301 189 22.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15442-PA 313 GE15442-PA 1..313 1..313 1668 98.1 Plus
Dyak\GE10447-PA 467 GE10447-PA 197..467 9..284 211 27 Plus
Dyak\GE22143-PA 552 GE22143-PA 316..551 2..244 193 25.9 Plus
Dyak\GE16263-PA 361 GE16263-PA 63..331 31..301 189 22.8 Plus
Dyak\GE19297-PA 322 GE19297-PA 72..297 8..242 180 27.2 Plus