Clone LD23131 Report

Search the DGRC for LD23131

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:231
Well:31
Vector:pOT2
Associated Gene/Transcriptarm-RA
Protein status:LD23131.pep: gold
Preliminary Size:3607
Sequenced Size:3141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11579 2001-01-01 Release 2 assignment
CG11579 2002-05-15 Blastp of sequenced clone
CG11579 2003-01-01 Sim4 clustering to Release 3
arm 2008-04-29 Release 5.5 accounting
arm 2008-08-15 Release 5.9 accounting
arm 2008-12-18 5.12 accounting

Clone Sequence Records

LD23131.complete Sequence

3141 bp (3141 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118525

> LD23131.complete
GGACAGCAGCAGGCCATCGCTAGTTGGGTTTCGTCGCCATATACACAGTT
TTTCTCGAGCAGACAATTCGCTGTTATTTTGTTTCTTATAGCGTTTTAAA
TAAATAAATCCTGCTCTAAAGCAGACTTAAATTCCTTGGACGCGGTGTGG
TGTAAAGCGCCTCAATCACCAAGATGAGTTACATGCCAGCCCAGAATCGA
ACCATGTCGCATAATAATCAATACAATCCACCTGATCTGCCGCCGATGGT
ATCCGCCAAGGAGCAGACCCTCATGTGGCAGCAGAATTCGTACTTGGGCG
ACTCCGGCATCCACTCGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGC
AAGGAGGACGAGGAGATGGAGGGAGATCCACTTATGTTCGACCTGGACAC
CGGTTTCCCGCAGAATTTCACACAAGACCAAGTGGACGATATGAACCAGC
AACTGAGCCAGACACGCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAA
ACCCTGGAGGAGGGCATTGAGATTCCCTCCACCCAGTTTGATCCCCAACA
GCCGACGGCAGTGCAACGTCTTTCGGAACCGTCACAAATGCTAAAGCACG
CGGTGGTCAATCTGATCAACTACCAGGACGACGCTGAGCTGGCAACCAGG
GCCATACCCGAGTTGATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGT
TTCCCAGGCCGCCATGATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGC
GACATGCCATTATGAACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCC
ATCTCTAACAGCAACGATCTGGAGAGCACCAAGGCAGCGGTAGGAACACT
GCACAACTTATCACACCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTG
GCGGCATCCCGGCACTCGTCAAGTTGCTCTCCTCGCCAGTGGAGAGTGTG
CTGTTCTATGCAATTACCACTCTGCACAATTTGCTGCTCCACCAGGATGG
CTCTAAGATGGCTGTGCGCCTGGCCGGCGGGCTTCAGAAGATGGTTACTC
TGCTGCAACGAAACAACGTTAAGTTTCTGGCTATCGTCACAGATTGCTTG
CAAATTCTGGCCTATGGTAACCAGGAGAGCAAGTTAATAATTCTTGCCTC
CGGAGGGCCCAACGAACTCGTGCGCATTATGCGCTCCTACGACTACGAGA
AGCTTCTGTGGACCACTTCGCGGGTACTGAAAGTGCTCTCCGTTTGCTCC
AGCAACAAGCCGGCCATCGTGGATGCCGGTGGAATGCAGGCGCTGGCTAT
GCACTTGGGTAACATGTCACCGCGCCTTGTGCAAAACTGTTTGTGGACGC
TCCGCAATCTTTCGGATGCAGCCACTAAGGTGGAGGGCCTTGAAGCTTTG
CTCCAATCTCTCGTCCAGGTTCTGGGCTCGACCGATGTCAACGTGGTCAC
CTGTGCCGCCGGTATCCTTTCAAATCTGACGTGCAACAATCAGCGCAACA
AGGCCACCGTTTGTCAGGTGGGCGGTGTGGACGCCCTCGTCCGTACTATT
ATCAATGCTGGAGATCGCGAAGAGATTACCGAGCCGGCTGTATGTGCCCT
GCGTCACTTGACCTCGCGTCATGTGGACTCTGAGTTGGCCCAGAATGCCG
TACGCTTAAACTACGGACTATCGGTGATTGTAAAGCTATTGCATCCACCA
TCACGCTGGCCCTTGATCAAGGCCGTCATTGGACTCATACGCAATTTGGC
CCTCTGTCCGGCCAATCACGCCCCGTTGCGGGAGCACGGGGCCATCCACC
ATCTGGTGCGACTGCTTATGCGCGCCTTCCAAGACACAGAGAGGCAACGT
TCCTCGATAGCCACCACTGGTTCACAGCAGCCGTCCGCATACGCTGACGG
CGTTCGCATGGAGGAGATTGTCGAGGGCACGGTGGGGGCGCTACATATCC
TGGCCCGCGAGTCTCACAACCGGGCACTCATTCGCCAGCAGTCGGTAATA
CCGATCTTTGTACGATTGCTGTTCAACGAAATCGAGAACATACAGCGCGT
GGCTGCTGGCGTTCTTTGTGAGCTCGCCGCTGACAAGGAGGGCGCCGAGA
TTATCGAGCAGGAGGGCGCCACTGGGCCGCTGACCGATCTCCTGCACTCG
CGCAATGAAGGCGTGGCCACATACGCCGCCGCTGTTCTCTTTCGCATGAG
TGAGGACAAGCCGCAGGATTACAAGAAGCGGCTATCCATAGAGCTGACCA
ACTCGCTGCTGCGCGAGGACAACAACATATGGGCCAATGCCGACCTGGGC
ATGGGTCCCGATCTACAGGATATGCTTGGACCAGAAGAAGCATATGAGGG
CCTGTACGGACAAGGTCCGCCCAGCGTGCACAGTTCACACGGAGGTCGCG
CATTCCATCAGCAAGGATATGATACTCTACCAATAGATTCGATGCAGGGT
CTGGAGATCAGCAGCCCAGTGGGCGGCGGCGGTGCTGGCGGTGCTCCCGG
CAATGGTGGAGCTGTAGGCGGAGCTAGCGGCGGCGGTGGTAACATCGGCG
CCATTCCGCCTAGCGGCGCACCAACTTCGCCCTATTCCATGGACATGGAC
GTTGGCGAGATTGATGCCGGTGCATTGAACTTTGACTTGGACGCCATGCC
GACGCCACCCAATGACAACAACAACCTGGCTGCCTGGTACGATACCGATT
GTTAGACAAGCCGAGCTAAGGGTAAGGGTCGAGTATCCATTCGACCCCAT
AACATAAAACACACGAATTCCCATCCCTGCACAATAGCCCTCTTCCACCG
GCTTTGATTCCATCCCGGATCCCGGAATCGCGATCACCGAAACTTGACTA
GATCAACGAAGGTGTGGATTTTACTTGACAAATACGAGGAGCTGCGGCAG
GTCAAAGTTCTGCTTCCAGAACTGAAGTCCGTGGGAGAAGGCTATTTGCT
CACACACCATACCCCGCGACAAAGCATACACACACGCATACATGCATAAT
ATTATACATTTATTATAATGCGAACGAAACGGCAAGAAAAACATATTATA
TGATGCATTACATATTACCCACGTAAACGAAATGGAAAATTAAACAAATG
TTTGCAATAGAACTCGTAAAAAAAAAAAAAAAAAAAAAAAA

LD23131.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
arm-RA 3235 arm-RA 46..3163 1..3118 15590 100 Plus
arm-RD 3181 arm-RD 133..3109 142..3118 14885 100 Plus
arm.b 3089 arm.b 46..2369 1..2324 11620 100 Plus
arm.b 3089 arm.b 2362..3066 2414..3118 3525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1788957..1790596 1844..205 8200 100 Minus
chrX 22417052 chrX 1785261..1785964 3117..2414 3520 100 Minus
chrX 22417052 chrX 1788350..1788625 2319..2044 1380 100 Minus
chrX 22417052 chrX 1788684..1788885 2045..1844 1010 100 Minus
chrX 22417052 chrX 1793884..1794030 147..1 735 100 Minus
chrX 22417052 chrX 1787245..1787346 2416..2315 510 100 Minus
chrX 22417052 chrX 1792823..1792883 204..144 305 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:39:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1895114..1896753 1844..205 8200 100 Minus
X 23542271 X 1891417..1892121 3118..2414 3525 100 Minus
X 23542271 X 1894507..1894782 2319..2044 1380 100 Minus
X 23542271 X 1894841..1895042 2045..1844 1010 100 Minus
X 23542271 X 1900041..1900187 147..1 735 100 Minus
X 23542271 X 1893402..1893503 2416..2315 510 100 Minus
X 23542271 X 1898980..1899040 204..144 305 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1903212..1904851 1844..205 8200 100 Minus
X 23527363 X 1899515..1900219 3118..2414 3525 100 Minus
X 23527363 X 1902605..1902880 2319..2044 1380 100 Minus
X 23527363 X 1902939..1903140 2045..1844 1010 100 Minus
X 23527363 X 1908139..1908285 147..1 735 100 Minus
X 23527363 X 1901500..1901601 2416..2315 510 100 Minus
X 23527363 X 1907078..1907138 204..144 305 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:39:20 has no hits.

LD23131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:40:02 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1785261..1785827 2551..3117 100 == Minus
chrX 1785907..1785962 2416..2471 100 <- Minus
chrX 1787246..1787342 2319..2415 100 <- Minus
chrX 1788351..1788623 2046..2318 100 <- Minus
chrX 1788684..1788884 1845..2045 100 <- Minus
chrX 1788957..1790596 205..1844 100 <- Minus
chrX 1792823..1792882 145..204 100 <- Minus
chrX 1793887..1794030 1..144 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:43 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RB 1..2532 174..2705 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:21 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RB 1..2532 174..2705 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:55:30 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RB 1..2532 174..2705 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:43:58 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RB 1..2532 174..2705 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:41 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RB 1..2532 174..2705 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:09 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RA 3..3119 1..3117 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:21 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RA 3..3119 1..3117 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:30 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RA 3..3119 1..3117 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:43:58 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RA 3..3119 1..3117 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:41 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm-RA 1..3103 15..3117 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:02 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900044..1900187 1..144 100   Minus
X 1895114..1896753 205..1844 100 <- Minus
X 1891418..1892119 2416..3117 100 <- Minus
X 1893403..1893499 2319..2415 100 <- Minus
X 1894508..1894780 2046..2318 100 <- Minus
X 1894841..1895041 1845..2045 100 <- Minus
X 1898980..1899039 145..204 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:02 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900044..1900187 1..144 100   Minus
X 1895114..1896753 205..1844 100 <- Minus
X 1891418..1892119 2416..3117 100 <- Minus
X 1893403..1893499 2319..2415 100 <- Minus
X 1894508..1894780 2046..2318 100 <- Minus
X 1894841..1895041 1845..2045 100 <- Minus
X 1898980..1899039 145..204 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:02 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900044..1900187 1..144 100   Minus
X 1895114..1896753 205..1844 100 <- Minus
X 1891418..1892119 2416..3117 100 <- Minus
X 1893403..1893499 2319..2415 100 <- Minus
X 1894508..1894780 2046..2318 100 <- Minus
X 1894841..1895041 1845..2045 100 <- Minus
X 1898980..1899039 145..204 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:30 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1788874..1789074 1845..2045 100 <- Minus
arm_X 1785451..1786152 2416..3117 100 <- Minus
arm_X 1787436..1787532 2319..2415 100 <- Minus
arm_X 1788541..1788813 2046..2318 100 <- Minus
arm_X 1789147..1790786 205..1844 100 <- Minus
arm_X 1793013..1793072 145..204 100 <- Minus
arm_X 1794077..1794220 1..144 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:17 Download gff for LD23131.complete
Subject Subject Range Query Range Percent Splice Strand
X 1899516..1900217 2416..3117 100 <- Minus
X 1901501..1901597 2319..2415 100 <- Minus
X 1902606..1902878 2046..2318 100 <- Minus
X 1902939..1903139 1845..2045 100 <- Minus
X 1903212..1904851 205..1844 100 <- Minus
X 1907078..1907137 145..204 100 <- Minus
X 1908142..1908285 1..144 100   Minus

LD23131.pep Sequence

Translation from 173 to 2704

> LD23131.pep
MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDSGIHSGA
VTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQ
RVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINY
QDDAELATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP
QMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVK
LLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNNVK
FLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSR
VLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAA
TKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG
GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLS
VIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMR
AFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNR
ALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGAT
GPLTDLLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDN
NIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHGGRAFHQQGYD
TLPIDSMQGLEISSPVGGGGAGGAPGNGGAVGGASGGGGNIGAIPPSGAP
TSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDC*

LD23131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19474-PA 844 GF19474-PA 1..844 1..843 4441 99.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12670-PA 843 GG12670-PA 1..843 1..843 4494 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17847-PA 836 GH17847-PA 1..836 1..843 4351 97.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
arm-PF 843 CG11579-PF 1..843 1..843 4318 100 Plus
arm-PE 843 CG11579-PE 1..843 1..843 4318 100 Plus
arm-PB 843 CG11579-PB 1..843 1..843 4318 100 Plus
arm-PD 843 CG11579-PD 1..843 1..843 4318 100 Plus
arm-PA 843 CG11579-PA 1..843 1..843 4318 100 Plus
arm-PC 721 CG11579-PC 1..718 1..718 3628 99.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21760-PA 706 GI21760-PA 1..624 1..624 3300 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27602-PA 721 GA27602-PA 1..718 1..718 3806 99.9 Plus
Dpse\GA27606-PA 82 GA27606-PA 1..82 757..843 306 81.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18941-PA 539 GM18941-PA 1..509 279..787 2684 99.8 Plus
Dsec\GM18939-PA 170 GM18939-PA 1..164 1..164 876 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16405-PA 169 GD16405-PA 1..169 675..843 901 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19138-PA 836 GJ19138-PA 1..836 1..843 4375 98.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16376-PA 841 GK16376-PA 1..841 1..843 4378 97.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16998-PA 719 GE16998-PA 1..715 1..715 3788 99.9 Plus

LD23131.hyp Sequence

Translation from 173 to 2704

> LD23131.hyp
MSYMPAQNRTMSHNNQYNPPDLPPMVSAKEQTLMWQQNSYLGDSGIHSGA
VTQVPSLSGKEDEEMEGDPLMFDLDTGFPQNFTQDQVDDMNQQLSQTRSQ
RVRAAMFPETLEEGIEIPSTQFDPQQPTAVQRLSEPSQMLKHAVVNLINY
QDDAELATRAIPELIKLLNDEDQVVVSQAAMMVHQLSKKEASRHAIMNSP
QMVAALVRAISNSNDLESTKAAVGTLHNLSHHRQGLLAIFKSGGIPALVK
LLSSPVESVLFYAITTLHNLLLHQDGSKMAVRLAGGLQKMVTLLQRNNVK
FLAIVTDCLQILAYGNQESKLIILASGGPNELVRIMRSYDYEKLLWTTSR
VLKVLSVCSSNKPAIVDAGGMQALAMHLGNMSPRLVQNCLWTLRNLSDAA
TKVEGLEALLQSLVQVLGSTDVNVVTCAAGILSNLTCNNQRNKATVCQVG
GVDALVRTIINAGDREEITEPAVCALRHLTSRHVDSELAQNAVRLNYGLS
VIVKLLHPPSRWPLIKAVIGLIRNLALCPANHAPLREHGAIHHLVRLLMR
AFQDTERQRSSIATTGSQQPSAYADGVRMEEIVEGTVGALHILARESHNR
ALIRQQSVIPIFVRLLFNEIENIQRVAAGVLCELAADKEGAEIIEQEGAT
GPLTDLLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSIELTNSLLREDN
NIWANADLGMGPDLQDMLGPEEAYEGLYGQGPPSVHSSHGGRAFHQQGYD
TLPIDSMQGLEISSPVGGGGAGGAPGNGGAVGGASGGGGNIGAIPPSGAP
TSPYSMDMDVGEIDAGALNFDLDAMPTPPNDNNNLAAWYDTDC*

LD23131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
arm-PF 843 CG11579-PF 1..843 1..843 4318 100 Plus
arm-PE 843 CG11579-PE 1..843 1..843 4318 100 Plus
arm-PB 843 CG11579-PB 1..843 1..843 4318 100 Plus
arm-PD 843 CG11579-PD 1..843 1..843 4318 100 Plus
arm-PA 843 CG11579-PA 1..843 1..843 4318 100 Plus