Clone LD23157 Report

Search the DGRC for LD23157

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:231
Well:57
Vector:pOT2
Associated Gene/TranscripteRF1-RA
Protein status:LD23157.pep: gold
Preliminary Size:2200
Sequenced Size:1785

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5605 2001-01-01 Release 2 assignment
CG5605 2001-11-29 Blastp of sequenced clone
CG5605 2003-01-01 Sim4 clustering to Release 3
eRF1 2008-04-29 Release 5.5 accounting
eRF1 2008-08-15 Release 5.9 accounting
eRF1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23157.complete Sequence

1785 bp (1785 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069511

> LD23157.complete
TGAATACTTTAAAACGTTTTTAATCGTTGCAGTGTATTCATCGCCAGCCA
CGTTAAAAGGAAGAACGTGTATGTGAATACGACCATCAGAGGATCTTAGC
GAAGGATTCAGGAGCCCAAATTCTTAATCCCCATCCCACACACACACATA
TACTCGCACGTAGGCACGCTCTCTGTGAGAGGAAGGGTAAATAAAAGAAG
CAACGAGCAAAATGTCTGGCGAGGAAACGTCTGCCGATCGCAATGTCGAG
ATCTGGAAAATCAAGAAGCTCATCAAGAGCCTGGAAATGGCCCGCGGCAA
TGGAACCAGCATGATTTCTTTGATTATTCCGCCAAAGGATCAAATCTCGC
GCGTCAGCAAGATGTTGGCCGATGAGTTTGGAACGGCGTCGAACATCAAG
TCGCGTGTAAATCGGTTGTCCGTCCTCGGTGCCATTACGTCGGTACAGCA
CAGACTCAAATTATACACCAAAGTGCCTCCCAACGGTTTGGTCATCTACT
GCGGCACAATAGTCACAGAGGAGGGCAAGGAGAAGAAGGTGAACATAGAC
TTTGAGCCATTCAAGCCCATAAACACGTCGCTCTACCTCTGCGACAACAA
GTTCCACACGGAGGCCCTCACTGCCCTGCTCGCCGACGACAACAAATTTG
GATTCATCGTGATGGATGGTAACGGAGCGCTATTCGGTACCCTTCAGGGC
AACACGCGCGAGGTGCTCCACAAGTTCACCGTCGATCTGCCGAAGAAGCA
CGGTCGTGGTGGTCAGTCCGCCCTTCGTTTCGCCCGTCTGCGTATGGAGA
AGCGCCACAACTACGTGCGGAAGGTCGCCGAGGTGGCCACCCAGCTCTTC
ATCACGAACGACAAGCCCAACATTGCCGGACTCATCCTGGCTGGTAGTGC
GGATTTCAAGACTGAGCTTAGTCAGTCTGATATGTTCGATCCTCGTTTGC
AATCAAAAGTCATCAAGCTGGTGGACGTGTCGTATGGTGGGGAAAACGGT
TTTAACCAGGCCATTGAACTGGCGGCCGAATCATTGCAGAACGTTAAATT
CATACAGGAGAAGAAACTCATTGGTCGCTACTTTGATGAAATTTCTCAGG
ATACTGGCAAATACTGTTTTGGAGTGGAGGACACTTTGCGGGCACTGGAA
CTTGGCTCTGTAGAGACTCTCATTTGTTGGGAGAACCTGGATATTCAACG
TTATGTTCTCAAGAATCATGCCAACTCGACGTCAACGACAGTATTACATT
TGACGCCCGAGCAGGAAAAGGACAAGTCGCACTTCACTGACAAGGAGAGC
GGGGTAGAAATGGAGCTGATTGAGTCTCAGCCGCTGCTGGAATGGCTGGC
AAACAACTACAAAATGTTCGGCGCCACACTGGAGATTATCACGGATAAGT
CCCAGGAAGGAAGTCAGTTCGTGCGAGGTTTCGGTGGAATCGGCGGTATC
TTACGCTACAAGGTGGATTTCCAGAGTATGCAGCTCGATGAATTGGACAA
TGATGGCTTCGATCTAGATGATTACTAGGAAATGTATCTGTAGAAATGAA
TTTGCCACTACGTTCGACCGCAAACTGAACTGCAACTACAACTATATGAA
TCCAGGAAATCAAATAGAATATTTAAATAATATGAGAAAACACAAACCTT
CTTCCATTTTTACGTTGTTGGCGAAAAAAGTAAAATTTTAAATAATGCAT
ATAGATACAAACGATAAAATGTTAAATCGAGGAAAACATATTAAAATGCA
ACCGTTTTACGTGAACAAAAAAAAAAAAAAAAAAA

LD23157.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-RA 2286 eRF1-RA 519..2286 1..1768 8840 100 Plus
eRF1.e 1805 eRF1.e 68..1805 31..1768 8690 100 Plus
eRF1.j 2056 eRF1.j 319..2056 31..1768 8690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20339620..20340091 472..943 2360 100 Plus
chr3L 24539361 chr3L 20341867..20342188 1445..1766 1610 100 Plus
chr3L 24539361 chr3L 20337980..20338276 1..297 1485 100 Plus
chr3L 24539361 chr3L 20340385..20340584 1098..1297 1000 100 Plus
chr3L 24539361 chr3L 20339367..20339543 297..473 870 99.4 Plus
chr3L 24539361 chr3L 20340157..20340313 944..1100 770 99.4 Plus
chr3L 24539361 chr3L 20340644..20340796 1296..1448 765 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20350557..20351028 472..943 2360 100 Plus
3L 28110227 3L 20352806..20353130 1445..1769 1625 100 Plus
3L 28110227 3L 20348910..20349206 1..297 1485 100 Plus
3L 28110227 3L 20351322..20351521 1098..1297 1000 100 Plus
3L 28110227 3L 20350304..20350480 297..473 885 100 Plus
3L 28110227 3L 20351094..20351250 944..1100 785 100 Plus
3L 28110227 3L 20351581..20351733 1296..1448 765 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20343657..20344128 472..943 2360 100 Plus
3L 28103327 3L 20345906..20346230 1445..1769 1625 100 Plus
3L 28103327 3L 20342010..20342306 1..297 1485 100 Plus
3L 28103327 3L 20344422..20344621 1098..1297 1000 100 Plus
3L 28103327 3L 20343404..20343580 297..473 885 100 Plus
3L 28103327 3L 20344194..20344350 944..1100 785 100 Plus
3L 28103327 3L 20344681..20344833 1296..1448 765 100 Plus
Blast to na_te.dros performed 2019-03-15 20:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 223..291 1682..1750 119 69 Plus

LD23157.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20340387..20340584 1100..1297 100 -> Plus
chr3L 20340646..20340793 1298..1445 100 -> Plus
chr3L 20337980..20338276 1..297 100 -> Plus
chr3L 20339368..20339543 298..473 99 -> Plus
chr3L 20339622..20340091 474..943 100 -> Plus
chr3L 20340157..20340312 944..1099 99 -> Plus
chr3L 20341868..20342188 1446..1766 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:46 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 1..1317 212..1528 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:20:13 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 1..1317 212..1528 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:55:36 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 1..1317 212..1528 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RE 1..1317 212..1528 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:40:59 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RF 1..1317 212..1528 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:54:01 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RA 519..2284 1..1766 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:20:13 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RA 519..2284 1..1766 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:36 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RA 556..2321 1..1766 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RA 519..2284 1..1766 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:40:59 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
eRF1-RA 556..2321 1..1766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20348910..20349206 1..297 100 -> Plus
3L 20350305..20350480 298..473 100 -> Plus
3L 20350559..20351028 474..943 100 -> Plus
3L 20351094..20351249 944..1099 100 -> Plus
3L 20351324..20351521 1100..1297 100 -> Plus
3L 20351583..20351730 1298..1445 100 -> Plus
3L 20352807..20353127 1446..1766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20348910..20349206 1..297 100 -> Plus
3L 20350305..20350480 298..473 100 -> Plus
3L 20350559..20351028 474..943 100 -> Plus
3L 20351094..20351249 944..1099 100 -> Plus
3L 20351324..20351521 1100..1297 100 -> Plus
3L 20351583..20351730 1298..1445 100 -> Plus
3L 20352807..20353127 1446..1766 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:28 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20348910..20349206 1..297 100 -> Plus
3L 20350305..20350480 298..473 100 -> Plus
3L 20350559..20351028 474..943 100 -> Plus
3L 20351094..20351249 944..1099 100 -> Plus
3L 20351324..20351521 1100..1297 100 -> Plus
3L 20351583..20351730 1298..1445 100 -> Plus
3L 20352807..20353127 1446..1766 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:36 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20344683..20344830 1298..1445 100 -> Plus
arm_3L 20342010..20342306 1..297 100 -> Plus
arm_3L 20343405..20343580 298..473 100 -> Plus
arm_3L 20343659..20344128 474..943 100 -> Plus
arm_3L 20344194..20344349 944..1099 100 -> Plus
arm_3L 20344424..20344621 1100..1297 100 -> Plus
arm_3L 20345907..20346227 1446..1766 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:51 Download gff for LD23157.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20343405..20343580 298..473 100 -> Plus
3L 20342010..20342306 1..297 100 -> Plus
3L 20343659..20344128 474..943 100 -> Plus
3L 20344194..20344349 944..1099 100 -> Plus
3L 20344424..20344621 1100..1297 100 -> Plus
3L 20344683..20344830 1298..1445 100 -> Plus
3L 20345907..20346227 1446..1766 100   Plus

LD23157.hyp Sequence

Translation from 211 to 1527

> LD23157.hyp
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDY*

LD23157.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-PG 438 CG5605-PG 1..438 1..438 2246 100 Plus
eRF1-PA 438 CG5605-PA 1..438 1..438 2246 100 Plus
eRF1-PF 438 CG5605-PF 1..438 1..438 2246 100 Plus
eRF1-PE 438 CG5605-PE 1..438 1..438 2246 100 Plus
eRF1-PB 438 CG5605-PB 1..438 1..438 2246 100 Plus

LD23157.pep Sequence

Translation from 211 to 1527

> LD23157.pep
MSGEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSK
MLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTI
VTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIV
MDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHN
YVRKVAEVATQLFITNDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKV
IKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGK
YCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPE
QEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEG
SQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDDY*

LD23157.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10329-PA 438 GF10329-PA 1..438 1..438 2329 99.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16102-PA 438 GG16102-PA 1..438 1..438 2329 99.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14730-PA 438 GH14730-PA 1..438 1..438 2315 98.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:00
Subject Length Description Subject Range Query Range Score Percent Strand
eRF1-PG 438 CG5605-PG 1..438 1..438 2246 100 Plus
eRF1-PA 438 CG5605-PA 1..438 1..438 2246 100 Plus
eRF1-PF 438 CG5605-PF 1..438 1..438 2246 100 Plus
eRF1-PE 438 CG5605-PE 1..438 1..438 2246 100 Plus
eRF1-PB 438 CG5605-PB 1..438 1..438 2246 100 Plus
eRF1-PC 438 CG5605-PC 1..438 1..438 2246 100 Plus
eRF1-PH 437 CG5605-PH 1..437 1..438 2190 98.4 Plus
eRF1-PI 447 CG5605-PI 1..414 1..414 2111 99.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13383-PA 438 GI13383-PA 1..438 1..438 2329 99.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25132-PA 438 GL25132-PA 1..438 1..438 2339 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19001-PA 437 GA19001-PA 1..437 1..438 2281 98.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22278-PA 438 GM22278-PA 1..438 1..438 2319 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14876-PA 438 GD14876-PA 1..438 1..438 2324 99.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11507-PA 438 GJ11507-PA 1..438 1..438 2335 99.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16952-PA 438 GK16952-PA 1..438 1..438 2324 99.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19667-PA 438 GE19667-PA 1..438 1..438 2333 99.8 Plus