Clone LD23191 Report

Search the DGRC for LD23191

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:231
Well:91
Vector:pOT2
Associated Gene/TranscriptGot1-RA
Protein status:LD23191.pep: gold
Preliminary Size:1797
Sequenced Size:1674

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8430 2001-01-01 Release 2 assignment
CG8430 2001-10-10 Blastp of sequenced clone
CG8430 2003-01-01 Sim4 clustering to Release 3
Got1 2008-04-29 Release 5.5 accounting
Got1 2008-08-15 Release 5.9 accounting
Got1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23191.complete Sequence

1674 bp (1674 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061313

> LD23191.complete
CCGACACTATTCCAAATTAATTTATTTGTTATTGTCGCTCCGTTTGGACT
TGTTTCCCAAGCTATCCACGATGTCCATCTACGCCGACGTTCCAAAAGGA
CCCGCCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAA
TCCCAACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAG
TTCCTTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGC
GATGAGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATT
CACCAATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCA
AGGAGAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTG
CGCGTTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTA
CTACTCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCG
GCTTTACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAG
TTGGACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGC
TGTGATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCA
CCCAGGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTG
TTCCCGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGA
TCGCGATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCT
TCATCTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACC
GGCAATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCA
CTCTCAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGT
ATGGAGCTCGCATCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAG
GAGTGGATGGCCTCCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCG
TACAGCTTTGCGGGACAAGCTGGTTGCCTTGGGCACCCCCGGCACCTGGG
ATCACATTGTCAACCAGATCGGCATGTTCTCCTACACCGGTCTGAACGAG
AGCCATGTTCGTGTGCTGATCGACCAGTACCACATTTACCTGCTGAAGAC
GGGACGCATCAGCATGAGTGGCCTGAATAAGGGCAACGTTGAATATGTGG
CCAAGGCGATCCATGCCGCTGTCACCGGATCAGGAGAAAGTGCATCATGT
CCTTGCGAAAACAAATTGTAATCGTACCATTGGATCGCACCATTGGATAG
ATACGTACAACGACTAGCTATGTACATATATTGGGCATGCGATTTAGAAA
TCCCAAAGCTGGATCACAGATGTCTGCACCATTGGCATTTAAATCAAACC
AACAACAATTGCAATTACTAAACGTTTATACGCGGCTTTTAGATGGATAT
ACACATATTATACACCGGAAACGAATGTTCCACATTAAAGTAAAAACTTT
ACAAAAATTACGCACTATTGAAAGCCGTCGAAGATTGGTTAAATAATTTA
AGCTTACAACGTTTATTGACCTGTGTGTAGTAACTAAATAAATCGACAAT
ATCATTAAAAAAAAAAAAAAAAAA

LD23191.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1726 Got1-RA 59..1715 1..1657 8285 100 Plus
Got1-RB 1726 Got1-RB 123..1720 60..1657 7990 100 Plus
Got2-RB 1560 Got2-RB 1183..1233 1096..1146 165 88.2 Plus
Got2-RB 1560 Got2-RB 696..751 609..664 160 85.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 12027952..12029246 362..1656 6325 99.2 Plus
chr2R 21145070 chr2R 12026037..12026215 1..179 895 100 Plus
chr2R 21145070 chr2R 12027647..12027756 179..288 550 100 Plus
chr2R 21145070 chr2R 12027817..12027892 287..362 380 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140634..16141929 362..1657 6480 100 Plus
2R 25286936 2R 16138706..16138884 1..179 895 100 Plus
2R 25286936 2R 16140329..16140438 179..288 550 100 Plus
2R 25286936 2R 16140499..16140574 287..362 380 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 16141833..16143128 362..1657 6480 100 Plus
2R 25260384 2R 16139905..16140083 1..179 895 100 Plus
2R 25260384 2R 16141528..16141637 179..288 550 100 Plus
2R 25260384 2R 16141698..16141773 287..362 380 100 Plus
2L 23513712 2L 1984839..1984889 1146..1096 165 88.2 Minus
2L 23513712 2L 1985321..1985376 664..609 160 85.7 Minus
Blast to na_te.dros performed on 2019-03-16 10:33:09 has no hits.

LD23191.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:34:05 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 12026037..12026215 1..179 100 -> Plus
chr2R 12027648..12027755 180..287 100 -> Plus
chr2R 12027818..12027891 288..361 100 -> Plus
chr2R 12027952..12029246 362..1656 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:50 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 49..1314 54..1321 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:47 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 49..1314 54..1321 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:54:45 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 49..1314 54..1321 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:40 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 49..1314 54..1321 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:59 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 49..1314 54..1321 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:12 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 31..1686 1..1656 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:47 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 31..1686 1..1656 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:54:45 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 28..1683 1..1656 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:40 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 31..1686 1..1656 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:59 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 28..1683 1..1656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:05 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16138706..16138884 1..179 100 -> Plus
2R 16140330..16140437 180..287 100 -> Plus
2R 16140500..16140573 288..361 100 -> Plus
2R 16140634..16141928 362..1656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:05 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16138706..16138884 1..179 100 -> Plus
2R 16140330..16140437 180..287 100 -> Plus
2R 16140500..16140573 288..361 100 -> Plus
2R 16140634..16141928 362..1656 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:34:05 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16138706..16138884 1..179 100 -> Plus
2R 16140330..16140437 180..287 100 -> Plus
2R 16140500..16140573 288..361 100 -> Plus
2R 16140634..16141928 362..1656 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:54:45 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12026211..12026389 1..179 100 -> Plus
arm_2R 12027835..12027942 180..287 100 -> Plus
arm_2R 12028005..12028078 288..361 100 -> Plus
arm_2R 12028139..12029433 362..1656 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:35 Download gff for LD23191.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16141833..16143127 362..1656 100   Plus
2R 16139905..16140083 1..179 100 -> Plus
2R 16141529..16141636 180..287 100 -> Plus
2R 16141699..16141772 288..361 100 -> Plus

LD23191.hyp Sequence

Translation from 0 to 1320

> LD23191.hyp
RHYSKLIYLLLSLRLDLFPKLSTMSIYADVPKGPAIEVFALTQAFKDDSN
PNKVNLSVGAYRTDAGVPWVLPVVRKTEISIASDEQVNHEYLPVTGLETF
TNAATELVLGADSPAIKENRAFGVQTISGTGALRVAADFLHTQLNRNVVY
YSNPTWENHHKIFCDAGFTTVKSYRYWDQNKRELDFKNMLADLNDAPPGA
VIILHACAHNPTGIDPTQEQWTELADLMEKKKLFPLFDSAYQGFASGDPD
RDAWAARYFVQRGFELFICQSFAKNFGLYCERTGNLAVVQKNGATKAAVH
SQLTLLIRGQYSNPPAYGARIVSKVLNTPELRKEWMASIQAMSSRIREMR
TALRDKLVALGTPGTWDHIVNQIGMFSYTGLNESHVRVLIDQYHIYLLKT
GRISMSGLNKGNVEYVAKAIHAAVTGSGESASCPCENKL*

LD23191.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-PB 437 CG8430-PB 18..437 20..439 2199 99.8 Plus
Got1-PA 416 CG8430-PA 1..416 24..439 2185 100 Plus
Got2-PA 424 CG4233-PA 9..420 9..421 941 46 Plus
Got2-PB 431 CG4233-PB 34..427 27..421 938 46.9 Plus

LD23191.pep Sequence

Translation from 70 to 1320

> LD23191.pep
MSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPV
VRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFG
VQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKS
YRYWDQNKRELDFKNMLADLNDAPPGAVIILHACAHNPTGIDPTQEQWTE
LADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFICQSFA
KNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVS
KVLNTPELRKEWMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQI
GMFSYTGLNESHVRVLIDQYHIYLLKTGRISMSGLNKGNVEYVAKAIHAA
VTGSGESASCPCENKL*

LD23191.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11770-PA 416 GF11770-PA 1..416 1..416 1959 84.6 Plus
Dana\GF15312-PA 424 GF15312-PA 25..420 2..398 969 47 Plus
Dana\GF10678-PA 674 GF10678-PA 249..643 1..398 694 37.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20572-PA 436 GG20572-PA 21..436 1..416 2141 93.3 Plus
Dere\GG24563-PA 424 GG24563-PA 27..420 4..398 980 46.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21676-PA 413 GH21676-PA 4..406 2..404 1778 79.7 Plus
Dgri\GH25015-PA 428 GH25015-PA 31..424 4..398 947 45.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-PA 416 CG8430-PA 1..416 1..416 2185 100 Plus
Got1-PB 437 CG8430-PB 22..437 1..416 2185 100 Plus
Got2-PA 424 CG4233-PA 27..420 4..398 938 46.9 Plus
Got2-PB 431 CG4233-PB 34..427 4..398 938 46.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18831-PA 410 GI18831-PA 4..404 2..402 1796 81.3 Plus
Dmoj\GI13534-PA 441 GI13534-PA 27..429 2..404 1095 48.4 Plus
Dmoj\GI13682-PA 427 GI13682-PA 30..423 4..398 924 45.3 Plus
Dmoj\GI11671-PA 467 GI11671-PA 47..426 18..398 808 43.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:36:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10236-PA 415 GL10236-PA 1..415 1..416 1919 84.4 Plus
Dper\GL18459-PA 427 GL18459-PA 28..423 2..398 991 47.7 Plus
Dper\GL19583-PA 462 GL19583-PA 37..433 1..398 687 36.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24132-PA 415 GA24132-PA 1..415 1..416 1919 84.4 Plus
Dpse\GA18050-PA 427 GA18050-PA 28..423 2..398 996 48 Plus
Dpse\GA26018-PA 462 GA26018-PA 37..433 1..398 685 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21664-PA 437 GM21664-PA 22..437 1..416 2201 96.6 Plus
Dsec\GM19419-PA 148 GM19419-PA 1..148 269..416 767 95.9 Plus
Dsec\GM16578-PA 1044 GM16578-PA 27..192 4..170 319 41.4 Plus
Dsec\GM13274-PA 70 GM13274-PA 1..65 1..58 189 64.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11164-PA 437 GD11164-PA 22..437 1..416 2201 96.6 Plus
Dsim\GD22881-PA 424 GD22881-PA 27..420 4..398 964 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21858-PA 411 GJ21858-PA 4..409 2..407 1787 78.8 Plus
Dvir\GJ13488-PA 826 GJ13488-PA 2..406 2..410 1175 51.6 Plus
Dvir\GJ13489-PA 421 GJ13489-PA 3..389 15..401 1121 53 Plus
Dvir\GJ17439-PA 427 GJ17439-PA 30..423 4..398 947 46.1 Plus
Dvir\GJ11347-PA 463 GJ11347-PA 47..426 18..398 792 42.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21961-PA 415 GK21961-PA 1..415 1..416 1923 83.9 Plus
Dwil\GK24813-PA 424 GK24813-PA 25..421 2..399 947 45.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11758-PA 437 GE11758-PA 22..437 1..416 2091 91.1 Plus
Dyak\GE15280-PA 424 GE15280-PA 27..420 4..398 980 46.9 Plus