Clone LD23193 Report

Search the DGRC for LD23193

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:231
Well:93
Vector:pOT2
Associated Gene/TranscriptNnp-1-RA
Protein status:LD23193.pep: gold
Preliminary Size:3700
Sequenced Size:2836

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12396 2001-01-01 Release 2 assignment
CG12396 2004-07-15 Blastp of sequenced clone
Nnp-1 2008-04-29 Release 5.5 accounting
Nnp-1 2008-08-15 Release 5.9 accounting
Nnp-1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23193.complete Sequence

2836 bp (2836 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015271

> LD23193.complete
CAACTAAAAGTTGAATTAGCCGGATAATGGTGACGCGCAAGAAGCCAGTT
AAGCGCAACGCCGAGGCGGCCGAAATCCAGGTCGAGCAGGAGGAGGACGC
TTCACAGCCGAAGGTGGCCAAGGAGCTGATGGTGGTCGCCCAGGAGGTGA
AAATTATACGTGCTCTTGCCTGCAACGATGTGGTGGAGCGTAATCGCCAG
ATCCGCATTTTGCGCAAGTGGTTCAAGGCGCGTGCCGGTAGCTCCTTTCC
CTTCAACGAGGACGACTTCATGCGCATCTGGAAGGGATTGTACTACACCA
TGTGGATGTCGGATAAGCCGCTGGTGCAGGAGGAGCTGGCCGAGAAGTTG
GCTCAAATGGTGGACAGCTTCGGCGGTAATACGGCCTGCAGTCTGGCCTA
CTTTAGTGCGTTTATGCGCACAATGTGCCAGGAGTACTTTGGCATAGATC
AGTGGCGCATGGACAAATTCCTGATGCTCACCCGCCGCATGGTGCGTTAT
CTACTGAGATTCCTCAAACAGAACAACTGGAATGCGGACCTGATAGCCGC
ATTCAACAGCAGCATGCAGCTTTCTGTGATGTCGGAGCAGCCTAAGTCTC
GCGGCATGACCATGCACTACCTAGATGTTTTCTTTGAGGAGCTGGCCAAG
GCGGCCAATGGTGAGATCACTGCTGCTCAGGTTAATATGTTCTTGCGTCC
GTTTGTCACCTACATTGCTACACAACGCGATGCTAAGCTAGTGGCACAGT
GCCGCACAAGGGTACTCTATCATCTGATGTACCAGAGCGACTTAGGACGA
CAGTACAGCGAAAAGTACAATGCCTGGAAGCAGATGGGTTTCCCCACCGC
CTCCATTGATGACATTGAGAAACTAGATTCTGGATTTGACGAGGAGGATG
ACGAGGTCAACGCCGAGGAGGAGCAGCCGCGGGCCACATCCTTGGATCCC
CGAGCGGGCAACGTGGACGTTCACATGCCGGAGCTGCCGCTCAACGCTGA
TTGCGTACTAGATGAGCTGCAGACGCAGCTACGCACCAACGATTTTAACA
GCAAGAGACGCAAGGGATTGCGCAAACTTATCCAGATCTTTGAGACTTAC
CAGAGAGGAGAGTTTCCACTTGGCGTGAGGACAATGCCAAAGGTGGAGGG
ACAAACTCTGTCCGAAATGGTGGAGCAAAAAGTGGCTGCCTTAGATAAGA
TGGAGGACGAGGTCTTTGCAACCGGAAGAAAACTGAAGAAGCTCAACAAA
TCCAAACGCAAACGCCTACTGCAGTCCATTAACTTTGAGGAGGTGGACGA
GCACAACTACGATGAGGTTATTAGCAAGGCTCTGCCTCCTGAGCTGCAGA
AGAAGGTGAATTACAATGCAAAGGTGCGTTCTAGCATAAACAACGCATGG
GTAGTAGAGGAGGTCAAGGAGGCCGAGCCCAAGTCGAAGAAAGCAAAAAA
GGAAGAACCGCCACAGCAGAACAAAGATGACCAGACGAAGGTGAAGAAGA
AAAGCCAGCTTAAGCCGAAGAATGACCAGTCCAAGCCCAAGATAGAGGAT
CAACCGACCTTGAAGGCAGAAAAAGAAGAGCCTGCGAAGCGCAAGAAATT
GGACCACTCCAAGACGAAGGAGGAGCAGTCGAAGCCGAAGACAGACGAGC
AGCCCAAGCCCACACCTAAGGTGGAGGGACAGTCCAAGGCCAAGCCGACT
CCCAAAACGAAGGCTGCCGGTGTTGATGATGATGCTCCGACCAACGGATG
GGATGCCCCTTTAGAGGACGGTGAGCAGGACATCTTTGTTCCCTCTCGAA
AACTGCAAGTGAAGCAGGCCAACAGTAAGCTGCCGCAGTCCACACCCAAA
CAGCCTGCGCGCGCAGAGTTTGCGACTCCACAAACGGGCAGTGGCAAGCA
TGTGCGGATCGTGACTAAGAGCAACTGCATCTACCCCAAGAGCGATTACT
ACCGCCAGCTGAAGCTGTCTCCGCAGGTGCCCTACGACGCGAATCGGTTG
CCCGGTAAGAGTGCCCTTAAGCCACACTGGATACCGGGACCGATTCATCC
GAGCTACAAGGCCAAGCGCTTGTTCAACGACACTCTGTGACAAAGCGTCT
AGTGGCAGCGACTGGGATTGGGACAGGATGAGGAAGATTAATTTGGACTT
AGTGCTCTGAGGGACGATGAAGAAGGGGGAGCGCTTCGCATCATACTACT
TCCTTATAAGGCAGTATAAGATAACACATCCACAATAGGCATGTCTTATG
CTGGTTTTATAATACGTCTATACACACGAAAGTTTCCATGCTATATTTTT
CTATTTTACAATGTTAAAGCCCTTTTGTTTAGTTTCGAGAGCACCGTTAC
TATGCTTAAATATTTCAATTTTCTAGAATAGTTGAAATTTACGATAGTTC
CGTGTTGCCTTGACTAATTTCTACTCAAATAAAATCCGTATAAGACATGT
ACTAAATGTAATCCCCTAATCTTTTAGTAGTTACAATTACGACTTAAAAT
ACTATTGCTTGTAGGCCATTTTATCGTTCAAGCTATCCTCTGATCTGAGT
TGAAATAAAAGCAAACGTAGTATATGTAAAATCAAATACGAATCACAAAG
TTTATTTAATTACCAGGTACAGAAAGAACTAAGTAATTTAGCATTTTGAT
GGGCTAACAATTCCAGCTTTCAAATTTCAAAACTATATTTTTTCGAGCAG
AGAATGGGGAAAACGAATGTATATCAATAGCTATTTGATAGTTAATAGCT
TATTATTATACCAACATTTTGAAAATAAATATGTCATTATTATTTTAAAA
AAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAA

LD23193.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
Nnp-1-RA 2889 Nnp-1-RA 87..2882 1..2797 13945 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13361981..13364776 2797..1 13845 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13363307..13366102 2797..1 13935 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13363307..13366102 2797..1 13945 99.9 Minus
Blast to na_te.dros performed 2019-03-16 09:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
FB 1106 FB DMTNFB 1106bp AKA(J01084) Derived from V00246 (g8708) (Rel. 36, Last updated, Version 3). 13..67 2702..2649 173 81.8 Minus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 1135..1211 2720..2797 144 66.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 992..1127 2659..2797 138 59.6 Plus
rooA 7621 rooA ROOA_LTR 7621bp 6139..6234 2564..2470 126 60.4 Minus

LD23193.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:37:38 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13361982..13364776 1..2796 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:51 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 1..2064 27..2090 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:18 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 1..2064 27..2090 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:03:04 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 1..2064 27..2090 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:13 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 1..2064 27..2090 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:14:42 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 1..2064 27..2090 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:33 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 87..2881 1..2796 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:18 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 87..2881 1..2796 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:03:04 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 88..2882 1..2796 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:13 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 87..2881 1..2796 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:14:42 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
Nnp-1-RA 88..2882 1..2796 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:38 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13363308..13366102 1..2796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:38 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13363308..13366102 1..2796 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:37:38 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13363308..13366102 1..2796 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:03:04 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13363308..13366102 1..2796 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:19 Download gff for LD23193.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13363308..13366102 1..2796 99   Minus

LD23193.hyp Sequence

Translation from 26 to 2089

> LD23193.hyp
MVTRKKPVKRNAEAAEIQVEQEEDASQPKVAKELMVVAQEVKIIRALACN
DVVERNRQIRILRKWFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPLV
QEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLM
LTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMSEQPKSRGMTMHYLD
VFFEELAKAANGEITAAQVNMFLRPFVTYIATQRDAKLVAQCRTRVLYHL
MYQSDLGRQYSEKYNAWKQMGFPTASIDDIEKLDSGFDEEDDEVNAEEEQ
PRATSLDPRAGNVDVHMPELPLNADCVLDELQTQLRTNDFNSKRRKGLRK
LIQIFETYQRGEFPLGVRTMPKVEGQTLSEMVEQKVAALDKMEDEVFATG
RKLKKLNKSKRKRLLQSINFEEVDEHNYDEVISKALPPELQKKVNYNAKV
RSSINNAWVVEEVKEAEPKSKKAKKEEPPQQNKDDQTKVKKKSQLKPKND
QSKPKIEDQPTLKAEKEEPAKRKKLDHSKTKEEQSKPKTDEQPKPTPKVE
GQSKAKPTPKTKAAGVDDDAPTNGWDAPLEDGEQDIFVPSRKLQVKQANS
KLPQSTPKQPARAEFATPQTGSGKHVRIVTKSNCIYPKSDYYRQLKLSPQ
VPYDANRLPGKSALKPHWIPGPIHPSYKAKRLFNDTL*

LD23193.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Nnp-1-PA 687 CG12396-PA 1..687 1..687 3573 100 Plus

LD23193.pep Sequence

Translation from 26 to 2089

> LD23193.pep
MVTRKKPVKRNAEAAEIQVEQEEDASQPKVAKELMVVAQEVKIIRALACN
DVVERNRQIRILRKWFKARAGSSFPFNEDDFMRIWKGLYYTMWMSDKPLV
QEELAEKLAQMVDSFGGNTACSLAYFSAFMRTMCQEYFGIDQWRMDKFLM
LTRRMVRYLLRFLKQNNWNADLIAAFNSSMQLSVMSEQPKSRGMTMHYLD
VFFEELAKAANGEITAAQVNMFLRPFVTYIATQRDAKLVAQCRTRVLYHL
MYQSDLGRQYSEKYNAWKQMGFPTASIDDIEKLDSGFDEEDDEVNAEEEQ
PRATSLDPRAGNVDVHMPELPLNADCVLDELQTQLRTNDFNSKRRKGLRK
LIQIFETYQRGEFPLGVRTMPKVEGQTLSEMVEQKVAALDKMEDEVFATG
RKLKKLNKSKRKRLLQSINFEEVDEHNYDEVISKALPPELQKKVNYNAKV
RSSINNAWVVEEVKEAEPKSKKAKKEEPPQQNKDDQTKVKKKSQLKPKND
QSKPKIEDQPTLKAEKEEPAKRKKLDHSKTKEEQSKPKTDEQPKPTPKVE
GQSKAKPTPKTKAAGVDDDAPTNGWDAPLEDGEQDIFVPSRKLQVKQANS
KLPQSTPKQPARAEFATPQTGSGKHVRIVTKSNCIYPKSDYYRQLKLSPQ
VPYDANRLPGKSALKPHWIPGPIHPSYKAKRLFNDTL*

LD23193.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21670-PA 670 GF21670-PA 1..670 1..687 2605 74.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10208-PA 698 GG10208-PA 1..698 1..687 3214 88.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13456-PA 694 GH13456-PA 1..694 1..687 2145 63.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Nnp-1-PA 687 CG12396-PA 1..687 1..687 3573 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14071-PA 353 GI14071-PA 1..333 1..330 1373 76 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25715-PA 657 GL25715-PA 1..657 1..687 2515 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11606-PA 654 GA11606-PA 1..654 1..687 2537 71.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25620-PA 665 GM25620-PA 1..665 1..687 3316 91.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:39:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22068-PA 686 GD22068-PA 1..686 1..687 3500 94.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18264-PA 680 GJ18264-PA 1..680 1..687 2338 68.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15286-PA 635 GK15286-PA 1..571 1..556 1891 65.6 Plus
Dwil\GK15286-PA 635 GK15286-PA 501..635 561..687 421 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11688-PA 697 GE11688-PA 1..697 1..687 3120 89.3 Plus