BDGP Sequence Production Resources |
Search the DGRC for LD23308
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 233 |
Well: | 8 |
Vector: | pOT2 |
Associated Gene/Transcript | CG9393-RA |
Protein status: | LD23308.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1486 |
Gene | Date | Evidence |
---|---|---|
CG9393 | 2001-01-01 | Release 2 assignment |
CG9393 | 2001-07-04 | Blastp of sequenced clone |
CG9393 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9393 | 2008-04-29 | Release 5.5 accounting |
CG9393 | 2008-08-15 | Release 5.9 accounting |
CG9393 | 2008-12-18 | 5.12 accounting |
1486 bp (1486 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051682
> LD23308.complete AAGCACTCGCAGCAGTCGGCCAGAAATTCTGGCATATATTTTTGGATTCA AATTCGGATGGCTGATATGCAGGTGGACTGTTGAAAACCGGCTAAATACA AGAGTACGAGCAAAGCATAGACTAGGACACAATGGAGATGCAACTGGGAG CCATGCTGTATGTGTACAAGGGGGAGTACGGACTGCCGTCCATAGATTTT GAATGTTTACGTGCTCTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGA CGTGCAGACCAGCTCCAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGT ATCTGCAGATCGGCAACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGC GTGCTGGATCTCGAGGGTTACCCGATAGATGCGCATTTAAGCACTAAACA AAAGCATTTGTCCACCGCCTACGCCAACTGGGTGTTCACCAATCTGCATG CCTACTACCACTACTTCCTGTTTGGAGAGCCTCACAATTTTGACACAACC ACGCGGGGCCTCTACGCCAAGCGCACGCCATTCCCCTTCAACTTCTACTA CCCGTCGTCCTACCAAAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCG GTTTCGATGTGAACGACAAGTTGGACAAGCACGAAGGCGACTACCTCGTT GTCAATGCCAAAAAAGTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAA GGTGTGGTTCTTTGGCGACACCTACAGCGAGTTTGATGCCATTGTCTACA GCTATCTTGCCATCATCTTTAAGATCGCACTGCCTAACAATCCACTGCAG AATCACATTAAGGGCTGCCAAAACCTAGTGAACTTTATCAACCGCATCAC GAAGGACATATTCCGCATCGAGGGATACAGTTCCGTCAAGCTCACAAAGA CACCCAGTGGCACGGAGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTA GACTCCGAGCTGAACACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGC CATGGGAGCGTTTGCGGCATGGCGTGGGATTTACAACCAGCTAACGACAC GCTCTTCGACGGACTACGATGGCATAGATTACGAGGATGACGAGATGGAG GAGGGCCTAGACTAATCGCATCTCTGCAACGATATCTATGTGTATAGTAT ATATATTTTAAAATACAATGTGGGGATGAAGCACAAAAACTGTCCAGCTT TAAAGGTTTACCTAAACACTGAAGGAGATCGATTTACTTGGCCATAAATC TTTGGACCGAAAATTTCGTCAGGTAATGATCCCCTCGTCGTAGATAACGC TTCGTTCCAAGGATTTGCCAAACAAATCGACTAAGTATGAAAATTCGGTT TATGTATTATAGTTCGAATTCGTTTTTAAACTGTCTTGTATAAAATAGCA TTTTAAAGTCATCTGAGCGTAATAAAATTGGATAACAGAGCCCTGTTGTC ATGGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5387417..5387838 | 1459..1038 | 2095 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 5388009..5388404 | 1040..645 | 1965 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 5388651..5388931 | 644..364 | 1405 | 100 | Minus |
chr3R | 27901430 | chr3R | 5389270..5389487 | 218..1 | 1090 | 100 | Minus |
chr3R | 27901430 | chr3R | 5389023..5389171 | 366..218 | 745 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9561582..9562004 | 1460..1038 | 2115 | 100 | Minus |
3R | 32079331 | 3R | 9562175..9562570 | 1040..645 | 1980 | 100 | Minus |
3R | 32079331 | 3R | 9562817..9563097 | 644..364 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 9563436..9563653 | 218..1 | 1090 | 100 | Minus |
3R | 32079331 | 3R | 9563189..9563337 | 366..218 | 745 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9302413..9302835 | 1460..1038 | 2115 | 100 | Minus |
3R | 31820162 | 3R | 9303006..9303401 | 1040..645 | 1980 | 100 | Minus |
3R | 31820162 | 3R | 9303648..9303928 | 644..364 | 1405 | 100 | Minus |
3R | 31820162 | 3R | 9304267..9304484 | 218..1 | 1090 | 100 | Minus |
3R | 31820162 | 3R | 9304020..9304168 | 366..218 | 745 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 554..633 | 1411..1332 | 112 | 60 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5387417..5387835 | 1041..1459 | 99 | <- | Minus |
chr3R | 5388009..5388404 | 645..1040 | 99 | <- | Minus |
chr3R | 5388651..5388929 | 366..644 | 100 | <- | Minus |
chr3R | 5389024..5389170 | 219..365 | 100 | <- | Minus |
chr3R | 5389270..5389487 | 1..218 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 1..984 | 132..1115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 1..984 | 132..1115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 1..984 | 132..1115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 1..984 | 132..1115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 1..984 | 132..1115 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 18..1476 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 18..1476 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 21..1479 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 18..1476 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG9393-RA | 21..1479 | 1..1459 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9563190..9563336 | 219..365 | 100 | <- | Minus |
3R | 9563436..9563653 | 1..218 | 100 | Minus | |
3R | 9562175..9562570 | 645..1040 | 100 | <- | Minus |
3R | 9561583..9562001 | 1041..1459 | 100 | <- | Minus |
3R | 9562817..9563095 | 366..644 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9563190..9563336 | 219..365 | 100 | <- | Minus |
3R | 9563436..9563653 | 1..218 | 100 | Minus | |
3R | 9562175..9562570 | 645..1040 | 100 | <- | Minus |
3R | 9561583..9562001 | 1041..1459 | 100 | <- | Minus |
3R | 9562817..9563095 | 366..644 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9563190..9563336 | 219..365 | 100 | <- | Minus |
3R | 9563436..9563653 | 1..218 | 100 | Minus | |
3R | 9562175..9562570 | 645..1040 | 100 | <- | Minus |
3R | 9561583..9562001 | 1041..1459 | 100 | <- | Minus |
3R | 9562817..9563095 | 366..644 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5387897..5388292 | 645..1040 | 100 | <- | Minus |
arm_3R | 5387305..5387723 | 1041..1459 | 100 | <- | Minus |
arm_3R | 5388539..5388817 | 366..644 | 100 | <- | Minus |
arm_3R | 5388912..5389058 | 219..365 | 100 | <- | Minus |
arm_3R | 5389158..5389375 | 1..218 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9302414..9302832 | 1041..1459 | 100 | <- | Minus |
3R | 9303006..9303401 | 645..1040 | 100 | <- | Minus |
3R | 9303648..9303926 | 366..644 | 100 | <- | Minus |
3R | 9304021..9304167 | 219..365 | 100 | <- | Minus |
3R | 9304267..9304484 | 1..218 | 100 | Minus |
Translation from 131 to 1114
> LD23308.hyp MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI YNQLTTRSSTDYDGIDYEDDEMEEGLD*
Translation from 131 to 1114
> LD23308.pep MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI YNQLTTRSSTDYDGIDYEDDEMEEGLD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16535-PA | 327 | GF16535-PA | 1..327 | 1..327 | 1613 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17360-PA | 327 | GG17360-PA | 1..327 | 1..327 | 1716 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19302-PA | 324 | GH19302-PA | 1..324 | 3..327 | 1518 | 84.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG9393-PA | 327 | CG9393-PA | 1..327 | 1..327 | 1731 | 100 | Plus |
CG9393-PB | 316 | CG9393-PB | 1..303 | 1..303 | 1604 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23519-PA | 324 | GI23519-PA | 1..324 | 3..327 | 1426 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21498-PA | 327 | GL21498-PA | 1..327 | 1..327 | 1488 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21755-PA | 327 | GA21755-PA | 1..327 | 1..327 | 1488 | 86.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26245-PA | 327 | GM26245-PA | 1..327 | 1..327 | 1733 | 98.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20785-PA | 327 | GD20785-PA | 1..327 | 1..327 | 1740 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10270-PA | 324 | GJ10270-PA | 1..324 | 3..327 | 1510 | 84 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11255-PA | 327 | GK11255-PA | 1..327 | 1..327 | 1547 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24764-PA | 327 | GE24764-PA | 1..327 | 1..327 | 1734 | 98.2 | Plus |