Clone LD23308 Report

Search the DGRC for LD23308

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:233
Well:8
Vector:pOT2
Associated Gene/TranscriptCG9393-RA
Protein status:LD23308.pep: gold
Preliminary Size:1300
Sequenced Size:1486

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9393 2001-01-01 Release 2 assignment
CG9393 2001-07-04 Blastp of sequenced clone
CG9393 2003-01-01 Sim4 clustering to Release 3
CG9393 2008-04-29 Release 5.5 accounting
CG9393 2008-08-15 Release 5.9 accounting
CG9393 2008-12-18 5.12 accounting

Clone Sequence Records

LD23308.complete Sequence

1486 bp (1486 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051682

> LD23308.complete
AAGCACTCGCAGCAGTCGGCCAGAAATTCTGGCATATATTTTTGGATTCA
AATTCGGATGGCTGATATGCAGGTGGACTGTTGAAAACCGGCTAAATACA
AGAGTACGAGCAAAGCATAGACTAGGACACAATGGAGATGCAACTGGGAG
CCATGCTGTATGTGTACAAGGGGGAGTACGGACTGCCGTCCATAGATTTT
GAATGTTTACGTGCTCTGTGCCTCCTGCGATTCACCCGCTGCCCCATGGA
CGTGCAGACCAGCTCCAATCCGCTGCGTTCGGGAGCCGGGAAGCTGCCGT
ATCTGCAGATCGGCAACCAGAAGTTCGCGGGCTATAGGCAAATTAAGCGC
GTGCTGGATCTCGAGGGTTACCCGATAGATGCGCATTTAAGCACTAAACA
AAAGCATTTGTCCACCGCCTACGCCAACTGGGTGTTCACCAATCTGCATG
CCTACTACCACTACTTCCTGTTTGGAGAGCCTCACAATTTTGACACAACC
ACGCGGGGCCTCTACGCCAAGCGCACGCCATTCCCCTTCAACTTCTACTA
CCCGTCGTCCTACCAAAGGGAAGCCTGCGACGTGGTTCAGGTGATGGCCG
GTTTCGATGTGAACGACAAGTTGGACAAGCACGAAGGCGACTACCTCGTT
GTCAATGCCAAAAAAGTGGTGAACCTGCTCTCCCGGAAATTGGGTCGCAA
GGTGTGGTTCTTTGGCGACACCTACAGCGAGTTTGATGCCATTGTCTACA
GCTATCTTGCCATCATCTTTAAGATCGCACTGCCTAACAATCCACTGCAG
AATCACATTAAGGGCTGCCAAAACCTAGTGAACTTTATCAACCGCATCAC
GAAGGACATATTCCGCATCGAGGGATACAGTTCCGTCAAGCTCACAAAGA
CACCCAGTGGCACGGAGGCCAGTCTGACGGCCTCGGAGCGCAAGTTCCTA
GACTCCGAGCTGAACACCAAAATAGTAGCCGGCGTGGGAGCCGTCTTGGC
CATGGGAGCGTTTGCGGCATGGCGTGGGATTTACAACCAGCTAACGACAC
GCTCTTCGACGGACTACGATGGCATAGATTACGAGGATGACGAGATGGAG
GAGGGCCTAGACTAATCGCATCTCTGCAACGATATCTATGTGTATAGTAT
ATATATTTTAAAATACAATGTGGGGATGAAGCACAAAAACTGTCCAGCTT
TAAAGGTTTACCTAAACACTGAAGGAGATCGATTTACTTGGCCATAAATC
TTTGGACCGAAAATTTCGTCAGGTAATGATCCCCTCGTCGTAGATAACGC
TTCGTTCCAAGGATTTGCCAAACAAATCGACTAAGTATGAAAATTCGGTT
TATGTATTATAGTTCGAATTCGTTTTTAAACTGTCTTGTATAAAATAGCA
TTTTAAAGTCATCTGAGCGTAATAAAATTGGATAACAGAGCCCTGTTGTC
ATGGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD23308.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-RA 1600 CG9393-RA 139..1598 1..1460 7300 100 Plus
CG9393.a 1220 CG9393.a 82..1121 1..1040 5200 100 Plus
MBD-like-RB 1023 MBD-like-RB 970..1023 1460..1407 270 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5387417..5387838 1459..1038 2095 99.8 Minus
chr3R 27901430 chr3R 5388009..5388404 1040..645 1965 99.7 Minus
chr3R 27901430 chr3R 5388651..5388931 644..364 1405 100 Minus
chr3R 27901430 chr3R 5389270..5389487 218..1 1090 100 Minus
chr3R 27901430 chr3R 5389023..5389171 366..218 745 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9561582..9562004 1460..1038 2115 100 Minus
3R 32079331 3R 9562175..9562570 1040..645 1980 100 Minus
3R 32079331 3R 9562817..9563097 644..364 1405 100 Minus
3R 32079331 3R 9563436..9563653 218..1 1090 100 Minus
3R 32079331 3R 9563189..9563337 366..218 745 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9302413..9302835 1460..1038 2115 100 Minus
3R 31820162 3R 9303006..9303401 1040..645 1980 100 Minus
3R 31820162 3R 9303648..9303928 644..364 1405 100 Minus
3R 31820162 3R 9304267..9304484 218..1 1090 100 Minus
3R 31820162 3R 9304020..9304168 366..218 745 100 Minus
Blast to na_te.dros performed 2019-03-16 04:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 554..633 1411..1332 112 60 Minus

LD23308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:05:12 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5387417..5387835 1041..1459 99 <- Minus
chr3R 5388009..5388404 645..1040 99 <- Minus
chr3R 5388651..5388929 366..644 100 <- Minus
chr3R 5389024..5389170 219..365 100 <- Minus
chr3R 5389270..5389487 1..218 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:58 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 132..1115 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:23 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 132..1115 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:15:28 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 132..1115 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:02 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 132..1115 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:25:37 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 1..984 132..1115 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:39 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 18..1476 1..1459 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:22 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 18..1476 1..1459 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:15:28 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 21..1479 1..1459 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:02 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 18..1476 1..1459 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:25:37 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
CG9393-RA 21..1479 1..1459 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:12 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563190..9563336 219..365 100 <- Minus
3R 9563436..9563653 1..218 100   Minus
3R 9562175..9562570 645..1040 100 <- Minus
3R 9561583..9562001 1041..1459 100 <- Minus
3R 9562817..9563095 366..644 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:12 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563190..9563336 219..365 100 <- Minus
3R 9563436..9563653 1..218 100   Minus
3R 9562175..9562570 645..1040 100 <- Minus
3R 9561583..9562001 1041..1459 100 <- Minus
3R 9562817..9563095 366..644 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:05:12 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563190..9563336 219..365 100 <- Minus
3R 9563436..9563653 1..218 100   Minus
3R 9562175..9562570 645..1040 100 <- Minus
3R 9561583..9562001 1041..1459 100 <- Minus
3R 9562817..9563095 366..644 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:15:28 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5387897..5388292 645..1040 100 <- Minus
arm_3R 5387305..5387723 1041..1459 100 <- Minus
arm_3R 5388539..5388817 366..644 100 <- Minus
arm_3R 5388912..5389058 219..365 100 <- Minus
arm_3R 5389158..5389375 1..218 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:45 Download gff for LD23308.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9302414..9302832 1041..1459 100 <- Minus
3R 9303006..9303401 645..1040 100 <- Minus
3R 9303648..9303926 366..644 100 <- Minus
3R 9304021..9304167 219..365 100 <- Minus
3R 9304267..9304484 1..218 100   Minus

LD23308.hyp Sequence

Translation from 131 to 1114

> LD23308.hyp
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLD*

LD23308.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 327 CG9393-PA 1..327 1..327 1731 100 Plus
CG9393-PB 316 CG9393-PB 1..303 1..303 1604 100 Plus

LD23308.pep Sequence

Translation from 131 to 1114

> LD23308.pep
MEMQLGAMLYVYKGEYGLPSIDFECLRALCLLRFTRCPMDVQTSSNPLRS
GAGKLPYLQIGNQKFAGYRQIKRVLDLEGYPIDAHLSTKQKHLSTAYANW
VFTNLHAYYHYFLFGEPHNFDTTTRGLYAKRTPFPFNFYYPSSYQREACD
VVQVMAGFDVNDKLDKHEGDYLVVNAKKVVNLLSRKLGRKVWFFGDTYSE
FDAIVYSYLAIIFKIALPNNPLQNHIKGCQNLVNFINRITKDIFRIEGYS
SVKLTKTPSGTEASLTASERKFLDSELNTKIVAGVGAVLAMGAFAAWRGI
YNQLTTRSSTDYDGIDYEDDEMEEGLD*

LD23308.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16535-PA 327 GF16535-PA 1..327 1..327 1613 92.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17360-PA 327 GG17360-PA 1..327 1..327 1716 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19302-PA 324 GH19302-PA 1..324 3..327 1518 84.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9393-PA 327 CG9393-PA 1..327 1..327 1731 100 Plus
CG9393-PB 316 CG9393-PB 1..303 1..303 1604 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23519-PA 324 GI23519-PA 1..324 3..327 1426 81.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21498-PA 327 GL21498-PA 1..327 1..327 1488 86.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21755-PA 327 GA21755-PA 1..327 1..327 1488 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26245-PA 327 GM26245-PA 1..327 1..327 1733 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20785-PA 327 GD20785-PA 1..327 1..327 1740 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10270-PA 324 GJ10270-PA 1..324 3..327 1510 84 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11255-PA 327 GK11255-PA 1..327 1..327 1547 85 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24764-PA 327 GE24764-PA 1..327 1..327 1734 98.2 Plus