BDGP Sequence Production Resources |
Search the DGRC for LD23309
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 233 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | sced-RA |
Protein status: | LD23309.pep: gold |
Preliminary Size: | 3700 |
Sequenced Size: | 2993 |
Gene | Date | Evidence |
---|---|---|
CG3273 | 2001-01-01 | Release 2 assignment |
CG3273 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3273 | 2003-08-11 | Blastp of sequenced clone |
sced | 2008-04-29 | Release 5.5 accounting |
sced | 2008-08-15 | Release 5.9 accounting |
sced | 2008-12-18 | 5.12 accounting |
2993 bp (2993 high quality bases) assembled on 2003-08-11
GenBank Submission: BT010289
> LD23309.complete ATAAACGTGCGATAAGAGAATAGCCGATAAGAGCTCCACCCAGTCGCAAA AAAGATGTAATTCTCGAAGTAGCGGATATAGATCGTTTACTTTTTTATTT TTCACTCGCAACTCATTCACCGCACCTCCATCCGCCCCACCACGTAGCAG TAGCCCCAAGATGGACCACAACGAAATCTCCATGACTATGGACGCCAAGC TGGATACACACGATAAGCGACCAGTGGCGCTGCGTTACAAGACATGGACC CGCTGCCAAGTGAAAATAGAGGCCATTAAGTGTGTGCCCTGCTTCCTGCG GCTCAGTTTCCAGGCCATGGAGACCGAGTCTCACTCCCAAGAGTGTCACC CCGCTAAACCCATTAGCGTCTCCGTAAACGTTCCGGGCGTCAGCTTGAGC CTGGCTACCTCGCGCACGAAGCAGCACTCGTACGGGCTGTTTTGGACGCA AAATCGGCGGGACTGCTTCATCTATTTCGCCCTGGAAACGGAGACATCCT GCCGACGTCACATGAAATGGATGCGGAAGTCGATTAAGAATCTGGAACTT TATCGCCAGGTCTTTCTAGAACAGCGCCGGCTGAGCAGGGGTCCCGGAGG TCTGGGCCCACTGCCTAACCTGCCGGAAACCCTCGACGCTAGCGCTCTCT CTCCGCGAGTCTCGCAAATATACGAGGAGATTTTTGACGGCAGCCGCATC TCCCGCGTCTCAATCGCATCCGGCATTTACGAAGAGATGAAGCCGTCAGT CATGGAGACTCCTTCACCGCCACCGCTGCCCGCACATCCTTACCGTCAGC GAATAAACACTTTTGAGTGCGCCCAGCTTGGCGAGATTGCGCGGTCCAGC ACCAATCCCGAATCGGAGCTGGCCAAGAAGAAGAAATACAAGAACATGCT GGACAACCTGTTCGGGAGTTCACGTCAAAAGCGTTCCGGCAGCACCAGCG AGGTGGCCAATGAACCCAGCGATGAGGTCCTGCCACTGTATGAGAATGCC CCCACGCCGGAGCCTGTGCTTCCGGTAAAGCGCACATCCCAGTTGAACAA GTCTCAGCGTAATAGCTTCTCAAGTCCGGACTTGTCCAAACTCAATCTGC TGGACACCTTTGGAGAATACTTCGAGGCCCAGAACCATGAGTCGAGCATG GAGATAAACATTAGTCTGGATGAGTCGGTCATTGAGCCGATCTCTCGCAA TGAGATTATTGCGCAAATATCTAGCCAATTGGGCAAAGCAGACTCTTTGG AAAGTCTGAATGTTTCGGAGCAACTTCCGTACAACTTCAACTTTTCCGCT TGTAACACGTCAACCATCAATCTCATTGGATCGCATGGAGCTGTTCCGCA GAGTAATCAGCTAAAGAAAAATAAGATACTGCACGAAGACCTTACGGGAT ACTGTGTAATGGCACCCATTTTAAAGGCGACGGTAAAAGATTTGCCACCA CAGCCAGGCGGCAGTACAGTGTCCACATCCTCCGGATATTCCACGGGCTC CTACTGCTCCTCCACCAGCAGCTGTAACACGGAGGACCAGCCCACCAAGA CGCAGATCGCCAATGAGAGTGACATATACGAAGTCATGCATGGAACCTCT CTGAACAGTACCGTCGGAGCGGCTGCAGCTGGATTTGCGGAACACCTCTA CGAGAACCTTTTGGCTGTGAAGGCCGCACAGGAGCTGGAGGCGCAGCCTG TCGGCTTTGGACTGAGCACAAGCACACCCACCGAATCTCCCCTGGCGCCG GCCTTGCCGCAAAAGGGAACGCCCAAGGACAAAACTTTGCAACAGAAGCC AGAGGAGGAAAACTACTACCAGACACCAAGAAAGTCGATTATCAGTGTGG ACGACAAGATACCCTCCTATTATCCGAACAGCTGCGACACACTCAAGTCA AAGCGACGCAGTCCCACCGAACATGGACCTAGTTTTAGGCACTTAGTCAG TTCCAAGTTGCGACGTGAACGAAAGGAGAACCTCTACATTTCCTCGCCCC AGCAAATCATTGAGCAGCGTCACAAGGCGGCCACCATCTCATCAGCATCA GTATCAGCCAAGACTAAAAGCTCAACCAAAAAGACTGCCGCCCACAAAAT TTCTGACAGTGTTTATGCAGTCACCCATCCGGTAAAGCGTCCGAACAGCA CCAATAGCAACAATACCCACCAAAGCAACAATAACAATAACAATGAAGGC GTGGATGACGAACTGCTGCACTTGACCGTTTTGAAGAACATTGACTTTAA GTTTGATGATAGCCAAGCATCTGAGGATTCCTGCAAGGCGAAAGCATCTG CTCTTCCCGTAGCGAACGAATGCTTTGTACAGCCAAATCTGGAGAAGGAG TACGAGGATCGCTTTCAAGCGGCGGAAAAGGCTAGTCGTCTTTTGCAAAA GTATGCGACGCTGGCCAAAATCGGGCATTCGCCCAGCAAGGCGTTGCCCG CACCAGCGCGTCTGGAACCCATGATTCAGTCTGTGGCCACGTCCAATGAG TTGCAGCCCGAGGGAGGCACCATGAAAAAGTTCGCCTCCCTACCACGCTT CAAGAAAATTGACTTTTCGCCGCTGAAGATGAGACTCAATAGTGTCCTCC AGAGAAATCCACCTTCGCCGCAGCACTAAAATGGATTCTCCGTTTTCCGT AACCATGTTTAACACTTCGCTGTGGACACAAACTGCTTTTTAACCATTTC GCTATTTATGTTGTAGTTTCTTGTGAATGTGATCTGATTAGTTCGACAAG TTGATTATTATGTTATCCGAGTATATAATACGCTTTCCCACGATGCACTT AGTATTAAGCCTTATATGTATGGTCATCCTGCTTTGTCAAATGTATTTTA ACGAACCATATCCGGATCCACTTGGGGGGTCCCCTAGTATTACTACTGTT GTGAACCAACGATGAATGTCTAAGAATATGCTCAATTATGAAAATTTACA AAAACGCTTTTATACGTATTAAACCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2544545..2547519 | 1..2975 | 14860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 6657352..6660331 | 1..2980 | 14900 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 6658551..6661530 | 1..2980 | 14900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2544545..2547519 | 1..2975 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 1..2469 | 161..2629 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 1..2469 | 161..2629 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 1..2469 | 161..2629 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 1..2469 | 161..2629 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 1..2469 | 161..2629 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 25..2999 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 25..2999 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 27..3001 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 25..2999 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
sced-RA | 27..3001 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6657352..6660326 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6657352..6660326 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6657352..6660326 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2544857..2547831 | 1..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 6658551..6661525 | 1..2975 | 100 | Plus |
Translation from 160 to 2628
> LD23309.pep MDHNEISMTMDAKLDTHDKRPVALRYKTWTRCQVKIEAIKCVPCFLRLSF QAMETESHSQECHPAKPISVSVNVPGVSLSLATSRTKQHSYGLFWTQNRR DCFIYFALETETSCRRHMKWMRKSIKNLELYRQVFLEQRRLSRGPGGLGP LPNLPETLDASALSPRVSQIYEEIFDGSRISRVSIASGIYEEMKPSVMET PSPPPLPAHPYRQRINTFECAQLGEIARSSTNPESELAKKKKYKNMLDNL FGSSRQKRSGSTSEVANEPSDEVLPLYENAPTPEPVLPVKRTSQLNKSQR NSFSSPDLSKLNLLDTFGEYFEAQNHESSMEINISLDESVIEPISRNEII AQISSQLGKADSLESLNVSEQLPYNFNFSACNTSTINLIGSHGAVPQSNQ LKKNKILHEDLTGYCVMAPILKATVKDLPPQPGGSTVSTSSGYSTGSYCS STSSCNTEDQPTKTQIANESDIYEVMHGTSLNSTVGAAAAGFAEHLYENL LAVKAAQELEAQPVGFGLSTSTPTESPLAPALPQKGTPKDKTLQQKPEEE NYYQTPRKSIISVDDKIPSYYPNSCDTLKSKRRSPTEHGPSFRHLVSSKL RRERKENLYISSPQQIIEQRHKAATISSASVSAKTKSSTKKTAAHKISDS VYAVTHPVKRPNSTNSNNTHQSNNNNNNEGVDDELLHLTVLKNIDFKFDD SQASEDSCKAKASALPVANECFVQPNLEKEYEDRFQAAEKASRLLQKYAT LAKIGHSPSKALPAPARLEPMIQSVATSNELQPEGGTMKKFASLPRFKKI DFSPLKMRLNSVLQRNPPSPQH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11059-PA | 817 | GF11059-PA | 1..817 | 1..822 | 3045 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23210-PA | 820 | GG23210-PA | 1..820 | 1..822 | 3912 | 94 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21818-PA | 875 | GH21818-PA | 1..875 | 1..821 | 2320 | 59.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
sced-PB | 822 | CG3273-PB | 1..822 | 1..822 | 4243 | 100 | Plus |
sced-PA | 822 | CG3273-PA | 1..822 | 1..822 | 4243 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20789-PA | 878 | GI20789-PA | 1..867 | 1..816 | 2330 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10111-PA | 819 | GL10111-PA | 1..818 | 1..821 | 3133 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25083-PA | 819 | GA25083-PA | 1..818 | 1..821 | 3133 | 78.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20884-PA | 822 | GM20884-PA | 1..822 | 1..822 | 4307 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10414-PA | 822 | GD10414-PA | 1..822 | 1..822 | 4309 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20523-PA | 867 | GJ20523-PA | 1..867 | 1..821 | 2541 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15787-PA | 848 | GK15787-PA | 1..848 | 1..822 | 2452 | 64.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19064-PA | 810 | GE19064-PA | 1..810 | 1..822 | 3893 | 91.8 | Plus |
Translation from 160 to 2628
> LD23309.hyp MDHNEISMTMDAKLDTHDKRPVALRYKTWTRCQVKIEAIKCVPCFLRLSF QAMETESHSQECHPAKPISVSVNVPGVSLSLATSRTKQHSYGLFWTQNRR DCFIYFALETETSCRRHMKWMRKSIKNLELYRQVFLEQRRLSRGPGGLGP LPNLPETLDASALSPRVSQIYEEIFDGSRISRVSIASGIYEEMKPSVMET PSPPPLPAHPYRQRINTFECAQLGEIARSSTNPESELAKKKKYKNMLDNL FGSSRQKRSGSTSEVANEPSDEVLPLYENAPTPEPVLPVKRTSQLNKSQR NSFSSPDLSKLNLLDTFGEYFEAQNHESSMEINISLDESVIEPISRNEII AQISSQLGKADSLESLNVSEQLPYNFNFSACNTSTINLIGSHGAVPQSNQ LKKNKILHEDLTGYCVMAPILKATVKDLPPQPGGSTVSTSSGYSTGSYCS STSSCNTEDQPTKTQIANESDIYEVMHGTSLNSTVGAAAAGFAEHLYENL LAVKAAQELEAQPVGFGLSTSTPTESPLAPALPQKGTPKDKTLQQKPEEE NYYQTPRKSIISVDDKIPSYYPNSCDTLKSKRRSPTEHGPSFRHLVSSKL RRERKENLYISSPQQIIEQRHKAATISSASVSAKTKSSTKKTAAHKISDS VYAVTHPVKRPNSTNSNNTHQSNNNNNNEGVDDELLHLTVLKNIDFKFDD SQASEDSCKAKASALPVANECFVQPNLEKEYEDRFQAAEKASRLLQKYAT LAKIGHSPSKALPAPARLEPMIQSVATSNELQPEGGTMKKFASLPRFKKI DFSPLKMRLNSVLQRNPPSPQH*