Clone LD23309 Report

Search the DGRC for LD23309

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:233
Well:9
Vector:pOT2
Associated Gene/Transcriptsced-RA
Protein status:LD23309.pep: gold
Preliminary Size:3700
Sequenced Size:2993

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3273 2001-01-01 Release 2 assignment
CG3273 2003-01-01 Sim4 clustering to Release 3
CG3273 2003-08-11 Blastp of sequenced clone
sced 2008-04-29 Release 5.5 accounting
sced 2008-08-15 Release 5.9 accounting
sced 2008-12-18 5.12 accounting

Clone Sequence Records

LD23309.complete Sequence

2993 bp (2993 high quality bases) assembled on 2003-08-11

GenBank Submission: BT010289

> LD23309.complete
ATAAACGTGCGATAAGAGAATAGCCGATAAGAGCTCCACCCAGTCGCAAA
AAAGATGTAATTCTCGAAGTAGCGGATATAGATCGTTTACTTTTTTATTT
TTCACTCGCAACTCATTCACCGCACCTCCATCCGCCCCACCACGTAGCAG
TAGCCCCAAGATGGACCACAACGAAATCTCCATGACTATGGACGCCAAGC
TGGATACACACGATAAGCGACCAGTGGCGCTGCGTTACAAGACATGGACC
CGCTGCCAAGTGAAAATAGAGGCCATTAAGTGTGTGCCCTGCTTCCTGCG
GCTCAGTTTCCAGGCCATGGAGACCGAGTCTCACTCCCAAGAGTGTCACC
CCGCTAAACCCATTAGCGTCTCCGTAAACGTTCCGGGCGTCAGCTTGAGC
CTGGCTACCTCGCGCACGAAGCAGCACTCGTACGGGCTGTTTTGGACGCA
AAATCGGCGGGACTGCTTCATCTATTTCGCCCTGGAAACGGAGACATCCT
GCCGACGTCACATGAAATGGATGCGGAAGTCGATTAAGAATCTGGAACTT
TATCGCCAGGTCTTTCTAGAACAGCGCCGGCTGAGCAGGGGTCCCGGAGG
TCTGGGCCCACTGCCTAACCTGCCGGAAACCCTCGACGCTAGCGCTCTCT
CTCCGCGAGTCTCGCAAATATACGAGGAGATTTTTGACGGCAGCCGCATC
TCCCGCGTCTCAATCGCATCCGGCATTTACGAAGAGATGAAGCCGTCAGT
CATGGAGACTCCTTCACCGCCACCGCTGCCCGCACATCCTTACCGTCAGC
GAATAAACACTTTTGAGTGCGCCCAGCTTGGCGAGATTGCGCGGTCCAGC
ACCAATCCCGAATCGGAGCTGGCCAAGAAGAAGAAATACAAGAACATGCT
GGACAACCTGTTCGGGAGTTCACGTCAAAAGCGTTCCGGCAGCACCAGCG
AGGTGGCCAATGAACCCAGCGATGAGGTCCTGCCACTGTATGAGAATGCC
CCCACGCCGGAGCCTGTGCTTCCGGTAAAGCGCACATCCCAGTTGAACAA
GTCTCAGCGTAATAGCTTCTCAAGTCCGGACTTGTCCAAACTCAATCTGC
TGGACACCTTTGGAGAATACTTCGAGGCCCAGAACCATGAGTCGAGCATG
GAGATAAACATTAGTCTGGATGAGTCGGTCATTGAGCCGATCTCTCGCAA
TGAGATTATTGCGCAAATATCTAGCCAATTGGGCAAAGCAGACTCTTTGG
AAAGTCTGAATGTTTCGGAGCAACTTCCGTACAACTTCAACTTTTCCGCT
TGTAACACGTCAACCATCAATCTCATTGGATCGCATGGAGCTGTTCCGCA
GAGTAATCAGCTAAAGAAAAATAAGATACTGCACGAAGACCTTACGGGAT
ACTGTGTAATGGCACCCATTTTAAAGGCGACGGTAAAAGATTTGCCACCA
CAGCCAGGCGGCAGTACAGTGTCCACATCCTCCGGATATTCCACGGGCTC
CTACTGCTCCTCCACCAGCAGCTGTAACACGGAGGACCAGCCCACCAAGA
CGCAGATCGCCAATGAGAGTGACATATACGAAGTCATGCATGGAACCTCT
CTGAACAGTACCGTCGGAGCGGCTGCAGCTGGATTTGCGGAACACCTCTA
CGAGAACCTTTTGGCTGTGAAGGCCGCACAGGAGCTGGAGGCGCAGCCTG
TCGGCTTTGGACTGAGCACAAGCACACCCACCGAATCTCCCCTGGCGCCG
GCCTTGCCGCAAAAGGGAACGCCCAAGGACAAAACTTTGCAACAGAAGCC
AGAGGAGGAAAACTACTACCAGACACCAAGAAAGTCGATTATCAGTGTGG
ACGACAAGATACCCTCCTATTATCCGAACAGCTGCGACACACTCAAGTCA
AAGCGACGCAGTCCCACCGAACATGGACCTAGTTTTAGGCACTTAGTCAG
TTCCAAGTTGCGACGTGAACGAAAGGAGAACCTCTACATTTCCTCGCCCC
AGCAAATCATTGAGCAGCGTCACAAGGCGGCCACCATCTCATCAGCATCA
GTATCAGCCAAGACTAAAAGCTCAACCAAAAAGACTGCCGCCCACAAAAT
TTCTGACAGTGTTTATGCAGTCACCCATCCGGTAAAGCGTCCGAACAGCA
CCAATAGCAACAATACCCACCAAAGCAACAATAACAATAACAATGAAGGC
GTGGATGACGAACTGCTGCACTTGACCGTTTTGAAGAACATTGACTTTAA
GTTTGATGATAGCCAAGCATCTGAGGATTCCTGCAAGGCGAAAGCATCTG
CTCTTCCCGTAGCGAACGAATGCTTTGTACAGCCAAATCTGGAGAAGGAG
TACGAGGATCGCTTTCAAGCGGCGGAAAAGGCTAGTCGTCTTTTGCAAAA
GTATGCGACGCTGGCCAAAATCGGGCATTCGCCCAGCAAGGCGTTGCCCG
CACCAGCGCGTCTGGAACCCATGATTCAGTCTGTGGCCACGTCCAATGAG
TTGCAGCCCGAGGGAGGCACCATGAAAAAGTTCGCCTCCCTACCACGCTT
CAAGAAAATTGACTTTTCGCCGCTGAAGATGAGACTCAATAGTGTCCTCC
AGAGAAATCCACCTTCGCCGCAGCACTAAAATGGATTCTCCGTTTTCCGT
AACCATGTTTAACACTTCGCTGTGGACACAAACTGCTTTTTAACCATTTC
GCTATTTATGTTGTAGTTTCTTGTGAATGTGATCTGATTAGTTCGACAAG
TTGATTATTATGTTATCCGAGTATATAATACGCTTTCCCACGATGCACTT
AGTATTAAGCCTTATATGTATGGTCATCCTGCTTTGTCAAATGTATTTTA
ACGAACCATATCCGGATCCACTTGGGGGGTCCCCTAGTATTACTACTGTT
GTGAACCAACGATGAATGTCTAAGAATATGCTCAATTATGAAAATTTACA
AAAACGCTTTTATACGTATTAAACCAAAAAAAAAAAAAAAAAA

LD23309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
sced-RA 3297 sced-RA 25..3004 1..2980 14900 100 Plus
sced.a 3206 sced.a 81..2913 148..2980 14165 100 Plus
sced.a 3206 sced.a 25..80 1..56 280 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2544545..2547519 1..2975 14860 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:12:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6657352..6660331 1..2980 14900 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6658551..6661530 1..2980 14900 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:24:00 has no hits.

LD23309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:24:50 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2544545..2547519 1..2975 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 18:59:59 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 1..2469 161..2629 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:53:11 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 1..2469 161..2629 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:18:04 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 1..2469 161..2629 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:18:41 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 1..2469 161..2629 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:58 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 1..2469 161..2629 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:16:41 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 25..2999 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:53:11 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 25..2999 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:18:04 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 27..3001 1..2975 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:18:41 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 25..2999 1..2975 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:58 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
sced-RA 27..3001 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:50 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6657352..6660326 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:50 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6657352..6660326 1..2975 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:24:50 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6657352..6660326 1..2975 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:18:04 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2544857..2547831 1..2975 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:52:56 Download gff for LD23309.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6658551..6661525 1..2975 100   Plus

LD23309.pep Sequence

Translation from 160 to 2628

> LD23309.pep
MDHNEISMTMDAKLDTHDKRPVALRYKTWTRCQVKIEAIKCVPCFLRLSF
QAMETESHSQECHPAKPISVSVNVPGVSLSLATSRTKQHSYGLFWTQNRR
DCFIYFALETETSCRRHMKWMRKSIKNLELYRQVFLEQRRLSRGPGGLGP
LPNLPETLDASALSPRVSQIYEEIFDGSRISRVSIASGIYEEMKPSVMET
PSPPPLPAHPYRQRINTFECAQLGEIARSSTNPESELAKKKKYKNMLDNL
FGSSRQKRSGSTSEVANEPSDEVLPLYENAPTPEPVLPVKRTSQLNKSQR
NSFSSPDLSKLNLLDTFGEYFEAQNHESSMEINISLDESVIEPISRNEII
AQISSQLGKADSLESLNVSEQLPYNFNFSACNTSTINLIGSHGAVPQSNQ
LKKNKILHEDLTGYCVMAPILKATVKDLPPQPGGSTVSTSSGYSTGSYCS
STSSCNTEDQPTKTQIANESDIYEVMHGTSLNSTVGAAAAGFAEHLYENL
LAVKAAQELEAQPVGFGLSTSTPTESPLAPALPQKGTPKDKTLQQKPEEE
NYYQTPRKSIISVDDKIPSYYPNSCDTLKSKRRSPTEHGPSFRHLVSSKL
RRERKENLYISSPQQIIEQRHKAATISSASVSAKTKSSTKKTAAHKISDS
VYAVTHPVKRPNSTNSNNTHQSNNNNNNEGVDDELLHLTVLKNIDFKFDD
SQASEDSCKAKASALPVANECFVQPNLEKEYEDRFQAAEKASRLLQKYAT
LAKIGHSPSKALPAPARLEPMIQSVATSNELQPEGGTMKKFASLPRFKKI
DFSPLKMRLNSVLQRNPPSPQH*

LD23309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11059-PA 817 GF11059-PA 1..817 1..822 3045 76.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23210-PA 820 GG23210-PA 1..820 1..822 3912 94 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21818-PA 875 GH21818-PA 1..875 1..821 2320 59.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
sced-PB 822 CG3273-PB 1..822 1..822 4243 100 Plus
sced-PA 822 CG3273-PA 1..822 1..822 4243 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20789-PA 878 GI20789-PA 1..867 1..816 2330 61.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10111-PA 819 GL10111-PA 1..818 1..821 3133 78.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25083-PA 819 GA25083-PA 1..818 1..821 3133 78.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20884-PA 822 GM20884-PA 1..822 1..822 4307 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10414-PA 822 GD10414-PA 1..822 1..822 4309 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20523-PA 867 GJ20523-PA 1..867 1..821 2541 63.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15787-PA 848 GK15787-PA 1..848 1..822 2452 64.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19064-PA 810 GE19064-PA 1..810 1..822 3893 91.8 Plus

LD23309.hyp Sequence

Translation from 160 to 2628

> LD23309.hyp
MDHNEISMTMDAKLDTHDKRPVALRYKTWTRCQVKIEAIKCVPCFLRLSF
QAMETESHSQECHPAKPISVSVNVPGVSLSLATSRTKQHSYGLFWTQNRR
DCFIYFALETETSCRRHMKWMRKSIKNLELYRQVFLEQRRLSRGPGGLGP
LPNLPETLDASALSPRVSQIYEEIFDGSRISRVSIASGIYEEMKPSVMET
PSPPPLPAHPYRQRINTFECAQLGEIARSSTNPESELAKKKKYKNMLDNL
FGSSRQKRSGSTSEVANEPSDEVLPLYENAPTPEPVLPVKRTSQLNKSQR
NSFSSPDLSKLNLLDTFGEYFEAQNHESSMEINISLDESVIEPISRNEII
AQISSQLGKADSLESLNVSEQLPYNFNFSACNTSTINLIGSHGAVPQSNQ
LKKNKILHEDLTGYCVMAPILKATVKDLPPQPGGSTVSTSSGYSTGSYCS
STSSCNTEDQPTKTQIANESDIYEVMHGTSLNSTVGAAAAGFAEHLYENL
LAVKAAQELEAQPVGFGLSTSTPTESPLAPALPQKGTPKDKTLQQKPEEE
NYYQTPRKSIISVDDKIPSYYPNSCDTLKSKRRSPTEHGPSFRHLVSSKL
RRERKENLYISSPQQIIEQRHKAATISSASVSAKTKSSTKKTAAHKISDS
VYAVTHPVKRPNSTNSNNTHQSNNNNNNEGVDDELLHLTVLKNIDFKFDD
SQASEDSCKAKASALPVANECFVQPNLEKEYEDRFQAAEKASRLLQKYAT
LAKIGHSPSKALPAPARLEPMIQSVATSNELQPEGGTMKKFASLPRFKKI
DFSPLKMRLNSVLQRNPPSPQH*

LD23309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
sced-PB 822 CG3273-PB 1..822 1..822 4243 100 Plus
sced-PA 822 CG3273-PA 1..822 1..822 4243 100 Plus