BDGP Sequence Production Resources |
Search the DGRC for LD23345
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 233 |
Well: | 45 |
Vector: | pOT2 |
Associated Gene/Transcript | tamo-RA |
Protein status: | LD23345.pep: gold |
Preliminary Size: | 2970 |
Sequenced Size: | 4163 |
Gene | Date | Evidence |
---|---|---|
CG4057 | 2002-07-13 | Blastp of sequenced clone |
CG4057 | 2003-01-01 | Sim4 clustering to Release 3 |
tamo | 2008-04-29 | Release 5.5 accounting |
tamo | 2008-08-15 | Release 5.9 accounting |
tamo | 2008-12-18 | 5.12 accounting |
4163 bp (4163 high quality bases) assembled on 2002-07-13
GenBank Submission: BT001486
> LD23345.complete CACGGTTAAAAGTTCTGCTCTCCGAGTTGATTAAACTGGCTAAAGTGATA TTTTATTTACTGTTGTGATAAACGCGTGTGAAAAACAAAGACTTTCCATT GCCCGCGGACACAAACGATCACGAACCGAAGAGTGAACCGCTCAGAAACG GGGGGAAAACCAGTTTTCCCACGATTTGATGTGATTGTGAAAGCGCAACG AGATTTGTCAACGCAAACAAGCAAGAAGAAGAGCCCGTGGATAGCGTAAT ATTTGTTAATAATAACGGCTGCAAAAACAACAACATTGCGGAAGCAGAAT CTCCGACTTGTCGCGTTTCCGTCGCAGCAGCGCTAAAAATAAACCCACCC ACGCACCGCCCCCTCTCGAATCGCCAACCACCCACTCCCGCCCACCATCC ACCTACCACCACCTTCCGCCCACACCCACGCACGAATTTGGAGAGGTGAA CTTGTGTTGACTTTTCCAGCGCGCGGACTTTTCCGAAGAAAAATGCAAAA ATGAGAGCCGAGCCACCAGCGGACCACTGGGAATTTGCGAGCCGGAGGCG CCTTGAATGAGAGTCCTTAGCCCGAGATGTCGGATTTCGTGCCGCACGAC CTCATCCCCGATCTGTGGGATGAGATTCTCCGGCGCCACTGGATGTTTCT CGAGACGGAGGAGAGCATAGAGAAGCTCGAGGAACGCAAGCAGCTGGAGG GCTGCCTGAAGGAGTTCCTCTGCGTGGTGCAGCACGATCGCAAGTTCTTT CTGCCGGAAACTGGGCATGTCCTGCGGAGGTCTGTGCTCGAGCTGCCCGA CTTTTCGGCCCAGAACGCCATCGTAGCCTTCGAGACCATCAGCCAGTATG CCAACAATCTGTTTACGAAGCCATGGCGAAAGGAGTATCGAACTCTCAAG ACCTATTCGGGATGCTTTCAGCACGACATCCAATCCCGCCTGCTGGACGC CGAACAGCTCTTCCTGGCCATGGGCTATCGCCGGGCTGCCGAGGACACCT TCGTCCTCGAGGGTCCCATCTGTCCGGATCAGGTTACGAATGTTTCGCGC GACGCAATGGCCGCCTACGTGGAGTGCCAGATTATGAAGCACATCTACGC GGGAGTGACGGCAGCGGGATACGTCTGCACTTGGAAGGACATCCTACAGT TCCGCGAGCGTTACGTGGGTGGAACTTCCACGACCATCAAGGAGATGGTC AGGCAGCTGAGTGAGAAACGGGTACGAATGGAGCAGCCACCGATGCAGGA GAATACATATAGCAATGTGGTGAGTGCTGCTCCAACTGCCTGCGGCATGC GCAGCAACAACGTTGCCCATCATCCCAGCAGTTCCGGCACTTGTGCCCTG CATCCCAATGGGCTGAACGAGGCGGGTAAGTATCTGCCGCCTTACCCAGC GCCTCCGCCGCAGCAACCGCACCTGCCTGGTCCGCTGATGACGCATTCTC GCAGCCTGGATCACTACCAGGAACCGCAGGCCCATCTGCCTCACCGTCAC TCCTTCGATCAGCAGCTCCAACAGCAGTGCCAGCTGCCGCACGTCTACGA GGCGCCCTATGACTGCTTAGATGGCCTGAGCATGGGCAGCAGTGCGTCCT ACGCTGCCGTGACTGGAGCCTACAATGCACCGGGAAACCGCTATCCGCTG CCGTACAACATCTCCAGCCAGCTGAATGCCCCGTATGCGTCGCCCGCCGA CTTCTATGGCAATGGACAGCACACCAACATGTACGCCACGCTGGGAAAGA CGGGCCCAGCCCACAGCTGCGATTTGCACCGTCGCCAGCCGAACACTTCT GCTGCTGCCGCTGCTGCCTTGGCGGCTATGCAGCACCGTCAGAGCACCTA TCCGCCGGATCACCACCTCATCGACTTTGACGAGCGAGCGCATCTGACCC AGCATGACTTTGGGACGCATGACTACGATCCGCAGTATGCCGAGCTGAGA GGTCAGGTGCAGCCTAGCATGCGGGGGAATCCGGTAGCCATGTATGCCAC CTACGGGGGCTACGACCTGCCCACCACGCTACCGCAAGCGCCGCCGCCGA CCGGCCAGGATATGTACATCTATGCGCGGCCGGTTCCGAAGAGCAGCCGT ATGCGGGCTTTGGCCGAGGCGGGTGGCATTAATTCGACTGACAAACATCC GCGATCAGCGGAAAAGCAAAGCACCATGGACAATAATCGCAAGATGCACA AGGAATTGAAGGAGCGGAATAGTCGGACTGCACCGGCCAAGAGGTCCGGC ACTGAACGTGATATACCCACCACCATTTCGGACTTGAACAGTTACGACTC GGCTAGTCTGGACGGATTTGTGGCCCTGGACAGTAGTAGCTCGCCGCCTC TCATGCCCAAAGTGCAGGAGGGTGTCGGCAGTTTCGAGTCCTGGAACTAT GTATTCAAGAACCTCGAGCGATCGGGCTACACAAAGGACCTGGGTGACCG CGAGGACTTGCTGGTGCAGAGCTTGGACCTAGGCTCGCTGTCCATAACGA ACGGCGGTGCAGCTCCTCCGGCGGAGAAGCGCCGTGAGGCCACGAATCCC ACAAACGGAGAGAAGGCGCGAACGCTAGATAAAAAATCCGGTACGGGGCG ACGCGAGGCTAAGGTGGTGCAAGCTCCTGCACCCAGTCCTCTGCCCAATA GCAGCAGTGCCGGCGTTAAGAAGGTCAAGTCCGCCTTGAAGACGGCCGTC GTGGACAATCGGGGAACCGGGTCAAGGCAACGCACAGGAGCTGTGCCCAA GCAGCCGCCGAATGTGTCTCCCCAGCTGATTGTGACCAGTCCGAACGAGT GGAGCTGCAGCTTCTGCACGTTCCTCAATCCGGACACGAAGCGCATCTGC GAGATGTGCTGCCGCAGCAAGGACTTCAACCTGGAGGCCGCATCGGCGGC TTCCTCCTCGGCGGCTGCAGCTGCGGCGTCAGCGGCCAGTGTGTCGCACG CATCCTCGACCTGCGTGTAGGATGCAGTGGATGCAACGGAACCCTCGTTA GTGATACAAACAGTGTATAGCTTCATATATTTTTTATACGACCAATGTAA GCCTGTGCGCGTGTCTCTAAGATCTAGTCTCGATCGAAGTCGTCGTTCGA TGGCAGGCAGCCCTTTGTCATCCGCATTCGGCTCCTTGGATGAGCGGATG GCGCTGCAGACGGGATGGGTCTGCAGTCTGTACATACGAAGTATTCTAAT TAGTTACCCCTACTCGTAAACACACGCTTTAATTAGTTTTAGATTGTTTC CCATTGTTAAGGGCGCTTCTGTTTCAAATTACGTGCCTCCCTGAATAAGT CATCTACATATACATATATACGAGTATATACAGCGTATAGACATTTATAT ATTTGTACGTGTGCATCCGGCGCGAGGAGCGAGAGAGTTAAATTCAAAAT TCGAAGTTGAAAGTTTGAAGTTTTCTAGGAAATCAACTGATAATATATAC CTTATACTAATAGTTGCATTCACAATACGTATTTCCGACAGTAAATCAGA GTACATAGAGTTATATACCGATCTTGCATAGATAGTACTTGTACACCTAT AGCCGTAACATAAGCGATTTCAATTCGAAGAACCGAGCTACGCATAAATA AGGCAACATAATAAATCGAACAGAACTGGTACGGGTTGTAAACTGAAAGT TTTTGATTCACACTTTACGAGAACTCAGTGGCCGCCTGGCCACCACCCAG TGGACACAGATCTCCACATCATCCCACCCACCCAAGCTACATATGTGACA GTTCCCAAAGCCATTTGTTTGTTAAATGTTACTATTGTTTCCTGTTGATG AAGCATCCCGCTAGAATCGAAATCCTCGAGATATTTTTGTAAGCTATACC CACGTACCTCTATTGCGCTATGTTGAATAGTTTGTTGTATTTTTTGTACA CCTCTGTTGACGTTTCGAGTTCCAAACGCCTTTCTCTATATGCCATGGCC AGCAGACCGCAGGAATATATCTAGACTTTAGACCGACTAAGGATTGAAAT TAAACCAAGGCCATTTCGGCACAACCTTCGCTCAAACCATTTACATTACA TTACATAACTTTGCATACTATTACCGAATGAATTTAGCAGCAGCTCTTCC TAAAATCTCTAACGAAAAAATAACAATAAAATACAATTTTGACATAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20012625..20014600 | 4145..2170 | 9865 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 20014667..20015937 | 2169..899 | 6340 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 20018983..20019521 | 539..1 | 2680 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 20016001..20016201 | 900..700 | 1005 | 100 | Minus |
chr2R | 21145070 | chr2R | 20016262..20016424 | 701..539 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24126637..24128613 | 4146..2170 | 9885 | 100 | Minus |
2R | 25286936 | 2R | 24128680..24129950 | 2169..899 | 6355 | 100 | Minus |
2R | 25286936 | 2R | 24132996..24133534 | 539..1 | 2695 | 100 | Minus |
2R | 25286936 | 2R | 24130014..24130214 | 900..700 | 1005 | 100 | Minus |
2R | 25286936 | 2R | 24130275..24130437 | 701..539 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24127836..24129812 | 4146..2170 | 9885 | 100 | Minus |
2R | 25260384 | 2R | 24129879..24131149 | 2169..899 | 6355 | 100 | Minus |
2R | 25260384 | 2R | 24134195..24134733 | 539..1 | 2695 | 100 | Minus |
2R | 25260384 | 2R | 24131213..24131413 | 900..700 | 1005 | 100 | Minus |
2R | 25260384 | 2R | 24131474..24131636 | 701..539 | 815 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 5198..5248 | 4089..4137 | 124 | 74.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20012625..20013403 | 3367..4145 | 99 | == | Minus |
chr2R | 20013470..20014600 | 2170..3300 | 100 | <- | Minus |
chr2R | 20014667..20015935 | 901..2169 | 99 | <- | Minus |
chr2R | 20016001..20016200 | 701..900 | 100 | <- | Minus |
chr2R | 20016263..20016424 | 539..700 | 100 | <- | Minus |
chr2R | 20018984..20019521 | 1..538 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RB | 1..2394 | 577..2970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RB | 1..2394 | 577..2970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 1..2394 | 577..2970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RB | 1..2394 | 577..2970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 1..2394 | 577..2970 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 18..4162 | 1..4145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 18..4162 | 1..4145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 18..4162 | 1..4145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 18..4162 | 1..4145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tamo-RA | 18..4162 | 1..4145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24126638..24128613 | 2170..4145 | 100 | <- | Minus |
2R | 24128680..24129948 | 901..2169 | 100 | <- | Minus |
2R | 24130014..24130213 | 701..900 | 100 | <- | Minus |
2R | 24130276..24130437 | 539..700 | 100 | <- | Minus |
2R | 24132997..24133534 | 1..538 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24126638..24128613 | 2170..4145 | 100 | <- | Minus |
2R | 24128680..24129948 | 901..2169 | 100 | <- | Minus |
2R | 24130014..24130213 | 701..900 | 100 | <- | Minus |
2R | 24130276..24130437 | 539..700 | 100 | <- | Minus |
2R | 24132997..24133534 | 1..538 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24126638..24128613 | 2170..4145 | 100 | <- | Minus |
2R | 24128680..24129948 | 901..2169 | 100 | <- | Minus |
2R | 24130014..24130213 | 701..900 | 100 | <- | Minus |
2R | 24130276..24130437 | 539..700 | 100 | <- | Minus |
2R | 24132997..24133534 | 1..538 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20014161..20016136 | 2170..4145 | 100 | <- | Minus |
arm_2R | 20016203..20017471 | 901..2169 | 100 | <- | Minus |
arm_2R | 20017537..20017736 | 701..900 | 100 | <- | Minus |
arm_2R | 20017799..20017960 | 539..700 | 100 | <- | Minus |
arm_2R | 20020520..20021057 | 1..538 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24127855..24129830 | 2170..4145 | 100 | <- | Minus |
2R | 24129897..24131165 | 901..2169 | 100 | <- | Minus |
2R | 24131231..24131430 | 701..900 | 100 | <- | Minus |
2R | 24131493..24131654 | 539..700 | 100 | <- | Minus |
2R | 24134214..24134751 | 1..538 | 100 | Minus |
Translation from 576 to 2969
> LD23345.pep MSDFVPHDLIPDLWDEILRRHWMFLETEESIEKLEERKQLEGCLKEFLCV VQHDRKFFLPETGHVLRRSVLELPDFSAQNAIVAFETISQYANNLFTKPW RKEYRTLKTYSGCFQHDIQSRLLDAEQLFLAMGYRRAAEDTFVLEGPICP DQVTNVSRDAMAAYVECQIMKHIYAGVTAAGYVCTWKDILQFRERYVGGT STTIKEMVRQLSEKRVRMEQPPMQENTYSNVVSAAPTACGMRSNNVAHHP SSSGTCALHPNGLNEAGKYLPPYPAPPPQQPHLPGPLMTHSRSLDHYQEP QAHLPHRHSFDQQLQQQCQLPHVYEAPYDCLDGLSMGSSASYAAVTGAYN APGNRYPLPYNISSQLNAPYASPADFYGNGQHTNMYATLGKTGPAHSCDL HRRQPNTSAAAAAALAAMQHRQSTYPPDHHLIDFDERAHLTQHDFGTHDY DPQYAELRGQVQPSMRGNPVAMYATYGGYDLPTTLPQAPPPTGQDMYIYA RPVPKSSRMRALAEAGGINSTDKHPRSAEKQSTMDNNRKMHKELKERNSR TAPAKRSGTERDIPTTISDLNSYDSASLDGFVALDSSSSPPLMPKVQEGV GSFESWNYVFKNLERSGYTKDLGDREDLLVQSLDLGSLSITNGGAAPPAE KRREATNPTNGEKARTLDKKSGTGRREAKVVQAPAPSPLPNSSSAGVKKV KSALKTAVVDNRGTGSRQRTGAVPKQPPNVSPQLIVTSPNEWSCSFCTFL NPDTKRICEMCCRSKDFNLEAASAASSSAAAAAASAASVSHASSTCV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13475-PA | 799 | GF13475-PA | 1..769 | 1..770 | 3041 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19950-PA | 793 | GG19950-PA | 1..793 | 1..797 | 3829 | 95.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21913-PA | 816 | GH21913-PA | 1..816 | 1..797 | 2403 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tamo-PC | 797 | CG4057-PC | 1..797 | 1..797 | 4234 | 100 | Plus |
tamo-PB | 797 | CG4057-PB | 1..797 | 1..797 | 4234 | 100 | Plus |
tamo-PA | 797 | CG4057-PA | 1..797 | 1..797 | 4234 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19263-PA | 820 | GI19263-PA | 1..820 | 1..797 | 2329 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10418-PA | 831 | GL10418-PA | 1..805 | 1..770 | 2794 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17922-PA | 831 | GA17922-PA | 1..805 | 1..770 | 2798 | 70 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18268-PA | 795 | GM18268-PA | 1..795 | 1..797 | 3896 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22138-PA | 824 | GJ22138-PA | 1..824 | 1..797 | 2478 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23198-PA | 820 | GK23198-PA | 1..820 | 1..797 | 2552 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11479-PA | 796 | GE11479-PA | 1..796 | 1..797 | 3764 | 94.7 | Plus |
Translation from 576 to 2969
> LD23345.hyp MSDFVPHDLIPDLWDEILRRHWMFLETEESIEKLEERKQLEGCLKEFLCV VQHDRKFFLPETGHVLRRSVLELPDFSAQNAIVAFETISQYANNLFTKPW RKEYRTLKTYSGCFQHDIQSRLLDAEQLFLAMGYRRAAEDTFVLEGPICP DQVTNVSRDAMAAYVECQIMKHIYAGVTAAGYVCTWKDILQFRERYVGGT STTIKEMVRQLSEKRVRMEQPPMQENTYSNVVSAAPTACGMRSNNVAHHP SSSGTCALHPNGLNEAGKYLPPYPAPPPQQPHLPGPLMTHSRSLDHYQEP QAHLPHRHSFDQQLQQQCQLPHVYEAPYDCLDGLSMGSSASYAAVTGAYN APGNRYPLPYNISSQLNAPYASPADFYGNGQHTNMYATLGKTGPAHSCDL HRRQPNTSAAAAAALAAMQHRQSTYPPDHHLIDFDERAHLTQHDFGTHDY DPQYAELRGQVQPSMRGNPVAMYATYGGYDLPTTLPQAPPPTGQDMYIYA RPVPKSSRMRALAEAGGINSTDKHPRSAEKQSTMDNNRKMHKELKERNSR TAPAKRSGTERDIPTTISDLNSYDSASLDGFVALDSSSSPPLMPKVQEGV GSFESWNYVFKNLERSGYTKDLGDREDLLVQSLDLGSLSITNGGAAPPAE KRREATNPTNGEKARTLDKKSGTGRREAKVVQAPAPSPLPNSSSAGVKKV KSALKTAVVDNRGTGSRQRTGAVPKQPPNVSPQLIVTSPNEWSCSFCTFL NPDTKRICEMCCRSKDFNLEAASAASSSAAAAAASAASVSHASSTCV*