Clone LD23375 Report

Search the DGRC for LD23375

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:233
Well:75
Vector:pOT2
Associated Gene/TranscriptZnT86D-RA
Protein status:LD23375.pep: gold
Preliminary Size:2033
Sequenced Size:2006

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6672 2002-01-01 Sim4 clustering to Release 2
CG6672 2002-04-25 Blastp of sequenced clone
CG6672 2008-04-29 Release 5.5 accounting
CG6672 2008-08-15 Release 5.9 accounting
CG6672 2008-12-18 5.12 accounting

Clone Sequence Records

LD23375.complete Sequence

2006 bp (2006 high quality bases) assembled on 2002-04-25

GenBank Submission: AY113365

> LD23375.complete
CAGATTGGTTTGGTGCTGGCAAAGACGGGAGTTCGGTTCTGGTATCTGGT
ACCCAGTAAAAATGAATTAAGCTGCAGCTGAATCGCAGATCGACGAGCCC
GCGCCGCACAACTGCGCACACAAGACGACGACGACGACGAAGTCGCGCAG
GAAGCATTTTGCTTGTGAGATAATTTGGGAATCAAAGAAAAGAGACCTGC
CGCCGCCGCCGTTGCCGATAAAGATTCTCGCGAACCCGGCCAGAAGCGGA
GTGGGAATCACGGAATCAGCTGGAGCGCGGCTATAGCCAACCGATAATAC
CACATCCATAACCGGCAAGATGATACCGCTGTCGCACAAGGACCGGAGCA
GTCTGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATC
TTCTCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCT
GAGCTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGG
GCCTGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTG
GCGGGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTT
CTCCTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCC
TGTTCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGA
CTTATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGT
GCTGGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCG
GACATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCAT
GGGCACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCA
AGCCATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCC
ATGGCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGC
GGCGTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGAT
CATCTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCA
TTTGCTCCATCTTCATAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTG
ATCAAGGAGTCGATCATGATCCTGATGCAGCGACAACCCGCCGACCTGGA
CCGATCGCTGCCGCAGTGCTATCAGAAAGTCACCGGCCTGGCTGGCGTTT
ACGCTGTGCAGGAGCCGCACTTCTGGACCCTTTGCTCCGATGTCTATGTG
GGCGCACTCAAGCTGGAGGTGTCCAAGAACGTCGATCCCAAGTACGTGGT
GACGCACACACGGATGATCTTTGAGGCGGTGGGCGTCAAGCAGATCTACA
TACAGTTGGATTATGTTTGATGCCAATGGGATCGACCCACCGGTGTCCTT
GTACAATGATCTGTATAGTTATCAGCGCATGTTGAATGTTTGTGGGCAGT
GCGACTCAAACATTATGAAATTTTAGTATACTACGGCGCCACAATACCCC
GCCCATCACTTCCGAATGTCCCCTCCAAGAGCTAAGTAAAAGAAAGTGTT
TGATTTTCAGTTGTACTTTCCGAATTTTTGTTAACTTATTAACGTTTGTA
TTTGTTGAAATGCGTTCGGCATTCATTCCAATTCTATACATACTGAAAGC
ATGGCATAACTTATGCAATAGTCCATATCGAGGAGCATTAGTGTAATTGT
AAGCTAAGCGAAAGATTTTGTGCAAAGGTAAATATAAATATTTAAAGATT
TTTTAAAATTCAGCATGAACAAAACCAGAAAATAGCAACTAATTCTGACT
GACATTTCCATGGACATTCCGCCGTGCGGTGGAAGTGCATTTGGTGAATC
GTTTTTGCCACAGTTTGAAGCATCAAAATTATGAACGAAATAAAATTTAA
TTTGTTATTAGCATTTTTATACGTAAACCGAAAAAAACAAAAAAAAAAAA
AAAAAA

LD23375.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6672-RA 2156 CG6672-RA 109..2090 1..1982 9910 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7037889..7038951 1982..920 5300 99.9 Minus
chr3R 27901430 chr3R 7039039..7039460 921..500 2110 100 Minus
chr3R 27901430 chr3R 7039797..7040099 303..1 1470 99 Minus
chr3R 27901430 chr3R 7039530..7039727 501..304 990 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11212306..11213368 1982..920 5315 100 Minus
3R 32079331 3R 11213456..11213877 921..500 2110 100 Minus
3R 32079331 3R 11214214..11214516 303..1 1515 100 Minus
3R 32079331 3R 11213947..11214144 501..304 990 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10953137..10954199 1982..920 5315 100 Minus
3R 31820162 3R 10954287..10954708 921..500 2110 100 Minus
3R 31820162 3R 10955045..10955347 303..1 1515 100 Minus
3R 31820162 3R 10954778..10954975 501..304 990 100 Minus
Blast to na_te.dros performed 2019-03-16 10:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 9434..9600 1956..1783 123 58.2 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1552..1718 1956..1783 123 58.2 Minus

LD23375.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:24 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7037882..7038950 921..1988 96 <- Minus
chr3R 7039040..7039459 501..920 100 <- Minus
chr3R 7039531..7039727 304..500 100 <- Minus
chr3R 7039797..7040099 1..303 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:04 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 320..1420 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:57:28 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 320..1420 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:58:02 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 320..1420 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:50:48 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 320..1420 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:06 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 1..1101 320..1420 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:37:22 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 2..1988 1..1988 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:57:28 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 2..1988 1..1988 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:58:02 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 24..2003 1..1980 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:50:48 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 2..1988 1..1988 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:06 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 24..2003 1..1980 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:24 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11213948..11214144 304..500 100 <- Minus
3R 11212299..11213367 921..1988 99 <- Minus
3R 11213457..11213876 501..920 100 <- Minus
3R 11214214..11214516 1..303 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:24 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11213948..11214144 304..500 100 <- Minus
3R 11212299..11213367 921..1988 99 <- Minus
3R 11213457..11213876 501..920 100 <- Minus
3R 11214214..11214516 1..303 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:24 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11213948..11214144 304..500 100 <- Minus
3R 11212299..11213367 921..1988 99 <- Minus
3R 11213457..11213876 501..920 100 <- Minus
3R 11214214..11214516 1..303 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:58:02 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7039936..7040238 1..303 100   Minus
arm_3R 7038021..7039089 921..1988 99 <- Minus
arm_3R 7039179..7039598 501..920 100 <- Minus
arm_3R 7039670..7039866 304..500 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:22:44 Download gff for LD23375.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10953130..10954198 921..1988 99 <- Minus
3R 10954288..10954707 501..920 100 <- Minus
3R 10954779..10954975 304..500 100 <- Minus
3R 10955045..10955347 1..303 100   Minus

LD23375.pep Sequence

Translation from 319 to 1419

> LD23375.pep
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYV*

LD23375.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18257-PA 372 GF18257-PA 1..372 1..366 1500 89.5 Plus
Dana\GF10205-PA 451 GF10205-PA 4..338 28..365 334 30.6 Plus
Dana\GF13836-PA 504 GF13836-PA 126..500 29..364 304 24.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17239-PA 366 GG17239-PA 1..366 1..366 1891 98.9 Plus
Dere\GG15123-PA 449 GG15123-PA 4..338 28..365 299 32.4 Plus
Dere\GG10848-PA 491 GG10848-PA 132..487 36..352 246 23.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19326-PA 371 GH19326-PA 1..371 1..366 1480 90 Plus
Dgri\GH17056-PA 524 GH17056-PA 4..337 28..365 296 30.5 Plus
Dgri\GH20420-PA 487 GH20420-PA 147..436 36..319 180 24.1 Plus
Dgri\GH10815-PA 466 GH10815-PA 75..428 31..344 150 20.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-PA 366 CG6672-PA 1..366 1..366 1926 100 Plus
ZnT63C-PG 449 CG17723-PG 11..338 36..365 434 34.7 Plus
ZnT63C-PE 449 CG17723-PE 11..338 36..365 434 34.7 Plus
ZnT63C-PD 449 CG17723-PD 11..338 36..365 434 34.7 Plus
ZnT63C-PC 449 CG17723-PC 11..338 36..365 434 34.7 Plus
ZnT63C-PB 449 CG17723-PB 11..338 36..365 434 34.7 Plus
ZnT63C-PA 449 CG17723-PA 11..338 36..365 434 34.7 Plus
ZnT63C-PF 545 CG17723-PF 11..338 36..365 434 34.7 Plus
ZnT41F-PD 498 CG11163-PD 133..494 36..364 311 24.5 Plus
ZnT41F-PC 498 CG11163-PC 133..494 36..364 311 24.5 Plus
ZnT41F-PB 498 CG11163-PB 133..494 36..364 311 24.5 Plus
ZnT41F-PA 498 CG11163-PA 133..494 36..364 311 24.5 Plus
ZnT35C-PB 440 CG3994-PB 57..402 34..344 287 24 Plus
ZnT35C-PA 472 CG3994-PA 89..434 34..344 287 24 Plus
ZnT33D-PB 701 CG31860-PB 339..649 34..364 264 22.5 Plus
Catsup-PA 449 CG10449-PA 66..140 158..238 155 38.3 Plus
Cpr35B-PA 218 CG3474-PA 141..214 159..216 150 41.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23936-PA 374 GI23936-PA 1..374 1..366 1521 86.6 Plus
Dmoj\GI12061-PA 513 GI12061-PA 4..337 28..365 287 32.5 Plus
Dmoj\GI19603-PA 485 GI19603-PA 148..459 35..344 211 23.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12040-PA 373 GL12040-PA 1..373 1..366 1494 91.2 Plus
Dper\GL16135-PA 450 GL16135-PA 4..340 28..365 326 32.9 Plus
Dper\GL20059-PA 539 GL20059-PA 163..488 35..319 154 24.2 Plus
Dper\GL25722-PA 482 GL25722-PA 311..444 212..344 151 24.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26171-PA 373 GA26171-PA 1..373 1..366 1490 91.4 Plus
Dpse\GA14626-PA 450 GA14626-PA 4..340 28..365 326 32.9 Plus
Dpse\GA16530-PB 716 GA16530-PB 370..681 34..364 230 22 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26118-PA 366 GM26118-PA 1..366 1..366 1908 99.5 Plus
Dsec\GM14558-PA 445 GM14558-PA 4..338 28..365 300 32.4 Plus
Dsec\GM16498-PA 497 GM16498-PA 116..495 13..354 225 20.7 Plus
Dsec\GM26751-PA 1509 GM26751-PA 661..966 30..364 210 20.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20678-PA 366 GD20678-PA 1..366 1..366 1913 99.7 Plus
Dsim\GD13749-PA 449 GD13749-PA 4..338 28..365 298 32.4 Plus
Dsim\GD10349-PA 500 GD10349-PA 125..498 29..354 233 22.1 Plus
Dsim\GD21968-PA 543 GD21968-PA 152..505 31..344 171 21.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10296-PA 370 GJ10296-PA 1..370 1..366 1465 90 Plus
Dvir\GJ13331-PA 529 GJ13331-PA 4..337 28..365 292 32.5 Plus
Dvir\GJ15930-PA 475 GJ15930-PA 79..437 31..344 184 20.2 Plus
Dvir\GJ18417-PA 498 GJ18417-PA 151..447 36..319 167 18.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13273-PA 369 GK13273-PA 1..369 1..366 1459 87.8 Plus
Dwil\GK16756-PA 562 GK16756-PA 4..338 28..365 310 31.5 Plus
Dwil\GK19068-PA 685 GK19068-PA 299..609 34..344 233 21.4 Plus
Dwil\GK18061-PA 480 GK18061-PA 85..442 31..344 203 20.6 Plus
Dwil\GK21764-PA 572 GK21764-PA 191..527 31..327 192 23.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24639-PA 366 GE24639-PA 1..366 1..366 1894 98.9 Plus
Dyak\GE21350-PA 449 GE21350-PA 4..338 28..365 297 32.4 Plus
Dyak\GE19441-PA 492 GE19441-PA 133..490 36..354 228 22 Plus

LD23375.hyp Sequence

Translation from 319 to 1419

> LD23375.hyp
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYV*

LD23375.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-PA 366 CG6672-PA 1..366 1..366 1926 100 Plus
ZnT63C-PG 449 CG17723-PG 11..338 36..365 434 34.7 Plus
ZnT63C-PE 449 CG17723-PE 11..338 36..365 434 34.7 Plus
ZnT63C-PD 449 CG17723-PD 11..338 36..365 434 34.7 Plus
ZnT63C-PC 449 CG17723-PC 11..338 36..365 434 34.7 Plus