Clone LD23405 Report

Search the DGRC for LD23405

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:234
Well:5
Vector:pOT2
Associated Gene/TranscriptCG6712-RA
Protein status:LD23405.pep: gold
Preliminary Size:1452
Sequenced Size:1314

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6712 2001-01-01 Release 2 assignment
CG6712 2001-07-04 Blastp of sequenced clone
CG6712 2003-01-01 Sim4 clustering to Release 3
CG6712 2008-04-29 Release 5.5 accounting
CG6712 2008-08-15 Release 5.9 accounting
CG6712 2008-12-18 5.12 accounting

Clone Sequence Records

LD23405.complete Sequence

1314 bp (1314 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051683

> LD23405.complete
ATCAACACGTGCCGCTCGCATTTTTGTGAATTCGTGATTCTCTCGGAATA
ATGATAAAAATTAAGCGAAAAACAGCCCCTCCGCCCGTGGAACAGGACTC
GGACAGCGATTCCAGCTTTGACGAGGAGGAGCCACAGGATTTGGAAGTCC
AGGAGGGGCCAGTCACTGATAGCAGCGATGAAGAAGCCGCCTCCAGCAGC
AAAAAAACGGCCAAACAAGGGGAAGCCAGTGAGGATTTAAAGGAAGAGGA
TGATGACGACGATGAGGAGGAGAATGACGACGACGACGAAGAAGAGGATG
ATGACGACGACGACGACAAGAAGACACGAATTCCTGTTTTGAATCCCCTC
AGCTGGATGCGCAACAAGGAGCAGCGTTTGGCGTTGTACAAAAAAATGAA
GAAGGAGAAGCACAAGAAAAAAATGCAGGAGCGCCGTGCCCGACGGAAGG
CTGGTGTACCCGCCAATCCTGGTCACACCATAGAGAGCCTGCGAGAGAAG
GACCAAACAGAGGTGGCCAATCTGAACGATTCCGACAACGAGGAGTTGCA
AAAGGAACTCCAACTGGACGATTTCAGCTCGTACTTCGAACGTTCGTACG
AGCCAAAGGTGCTGATCACTTTTGCTGACAATCCGGTGACCAAGACGCGT
AAGTTTGGACTGGAGCTTTCGCGCATATTCCCCAACGCCCTGGTTAAGAT
TCGCAACAAGTCGTCGGTGAAGAAGATATGCAAAAGCGCCGAGCGCGAGG
AGTTCACAGACGTCGTGATCGTTAACGAAGATCGCAGAAAGCCCAATGGG
CTGCTGGTCATTCATCTGCCCAATGGTCCCACTGCCCACTTCAAGCTGTC
CAACGTGAAGCTCACCTCGGACATAAAGCGCGATCACAAGGAGATAACCA
AGCACAGGCCCGAAGTGATCCTGAACAATTTTACCACACGTTTGGGTCTG
ACCGTGGGCCGCATGCTGGGTGCCCTCTTCCATCACGATCCCGAGTTCCG
CGGCCGCCGAGCGGTGACGTTCCACAATCAGCGAGATTACATATTCTTCC
GTCACCACCGCTACGAGTTCACCAAAGAGGGAAAACGCGTAAAGCTGCGC
GAACTGGGGCCGCGGTTCACCCTGAAACTACGTTCCCTGCAGGAGGGCAC
ATTCGACAGCAAGACCGGTGACTATGCCTGGATAATCAGCAACAAACGGC
ACGCCATGGAGTCGCGACGTCGCTTCTTCCTCTAGGTGTATTTCGAGGCA
TTGTATTTAGGTATAGAACTACTTAATAAACCAACAGTTAATACGAAAAA
AAAAAAAAAAAAAA

LD23405.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6712-RA 1335 CG6712-RA 41..1335 1..1295 6475 100 Plus
CG5325-RA 1327 CG5325-RA 1203..1327 1299..1175 625 100 Minus
CG5325-RB 1330 CG5325-RB 1206..1330 1299..1175 625 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12093840..12095134 1295..1 6325 99.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:27:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12095172..12096470 1299..1 6495 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12095172..12096470 1299..1 6495 100 Minus
Blast to na_te.dros performed on 2019-03-16 10:27:35 has no hits.

LD23405.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:28:25 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12093840..12094817 318..1295 99 == Minus
chr2L 12094887..12095134 1..248 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:05 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 1..1185 51..1235 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:24 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 1..1185 51..1235 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:58:40 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 1..1185 51..1235 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:03 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 1..1185 51..1235 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:09 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 1..1185 51..1235 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:41 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 41..1335 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:24 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 41..1335 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:58:40 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 42..1336 1..1295 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:04 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 41..1335 1..1295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:09 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
CG6712-RA 42..1336 1..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:25 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12095176..12096470 1..1295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:25 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12095176..12096470 1..1295 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:28:25 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12095176..12096470 1..1295 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:58:40 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12095176..12096470 1..1295 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:46 Download gff for LD23405.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12095176..12096470 1..1295 100   Minus

LD23405.hyp Sequence

Translation from 50 to 1234

> LD23405.hyp
MIKIKRKTAPPPVEQDSDSDSSFDEEEPQDLEVQEGPVTDSSDEEAASSS
KKTAKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPL
SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREK
DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTR
KFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNG
LLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGL
TVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLR
ELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL*

LD23405.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6712-PA 394 CG6712-PA 1..394 1..394 2050 100 Plus
CG11920-PA 298 CG11920-PA 7..282 106..391 335 32.3 Plus

LD23405.pep Sequence

Translation from 50 to 1234

> LD23405.pep
MIKIKRKTAPPPVEQDSDSDSSFDEEEPQDLEVQEGPVTDSSDEEAASSS
KKTAKQGEASEDLKEEDDDDDEEENDDDDEEEDDDDDDDKKTRIPVLNPL
SWMRNKEQRLALYKKMKKEKHKKKMQERRARRKAGVPANPGHTIESLREK
DQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTR
KFGLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNG
LLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGL
TVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKEGKRVKLR
ELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL*

LD23405.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23434-PA 389 GF23434-PA 1..389 1..394 1608 85 Plus
Dana\GF17886-PA 298 GF17886-PA 80..271 184..378 339 37.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10274-PA 394 GG10274-PA 1..394 1..394 1696 95.4 Plus
Dere\GG11358-PA 298 GG11358-PA 80..285 184..394 339 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10194-PA 400 GH10194-PA 1..400 1..394 1554 81.8 Plus
Dgri\GH18024-PA 298 GH18024-PA 37..272 150..378 335 33.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6712-PA 394 CG6712-PA 1..394 1..394 2050 100 Plus
CG11920-PA 298 CG11920-PA 7..282 106..391 335 32.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14801-PA 407 GI14801-PA 1..407 1..394 1502 82.1 Plus
Dmoj\GI16926-PA 218 GI16926-PA 1..192 184..378 302 34.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14129-PA 398 GL14129-PA 1..398 1..394 1546 83.5 Plus
Dper\GL21897-PA 293 GL21897-PA 80..271 184..378 327 35.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19804-PA 396 GA19804-PA 1..396 1..394 1541 83.7 Plus
Dpse\GA22540-PA 293 GA22540-PA 80..271 184..378 327 35.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26329-PA 392 GM26329-PA 1..392 1..394 1995 97 Plus
Dsec\GM17799-PA 298 GM17799-PA 80..285 184..394 338 35.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22130-PA 392 GD22130-PA 1..392 1..394 1998 97 Plus
Dsim\GD21170-PA 298 GD21170-PA 80..285 184..394 337 35.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20668-PA 395 GJ20668-PA 1..395 1..394 1552 82.8 Plus
Dvir\GJ23618-PA 297 GJ23618-PA 81..272 184..378 320 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21080-PA 392 GK21080-PA 1..392 1..394 1592 85.7 Plus
Dwil\GK12239-PA 306 GK12239-PA 80..273 184..380 342 36.9 Plus
Dwil\GK19236-PA 154 GK19236-PA 2..127 250..378 213 37.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12424-PA 393 GE12424-PA 1..393 1..394 1659 95.4 Plus
Dyak\GE23555-PA 298 GE23555-PA 80..285 184..394 339 35.8 Plus