Clone LD23434 Report

Search the DGRC for LD23434

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:234
Well:34
Vector:pOT2
Associated Gene/TranscriptCG6664-RA
Protein status:LD23434.pep: gold
Preliminary Size:2294
Sequenced Size:2284

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6664 2001-11-09 Blastp of sequenced clone
CG6664 2003-01-01 Sim4 clustering to Release 3
CG6664 2008-04-29 Release 5.5 accounting
CG6664 2008-08-15 Release 5.9 accounting
CG6664 2008-12-18 5.12 accounting

Clone Sequence Records

LD23434.complete Sequence

2284 bp (2284 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069514

> LD23434.complete
CTTTAATTTTATTCGATCGGATCGGGCAAAATGTACCGCACTCAGATCTG
CAGGCCCTAAGCAGACGCCTAAGGTTCAACTCTACTCCGTTCGCAGCTGC
ATCCTTTCACCTGCGCAGGTGAAACGCAAGAACGGCAACCAGAGCCCTGG
TGAAACAGAGTCGGCGAAGGAGTGTTCAAGAGGGGGGAGGAGCAGTGCGG
CGGAAGGCAAAAGTCTTTTAAGGCGAAACAGCGCACAAAAGCCAGTTTTG
CAGGCATGGAAAGTCCCTGTGAATCCGAAAGTTCGCTGGACGGTGGCACC
ATGCTGCCACCAAGCCCAGTTTCCCGGGAGCAACTCCAGAAGAGGATCGA
ATCGCTCACCCAGCAGAACAAGGTGCTGAAAGCCGAACTGGATACCTTCA
AGACCAAGTGCAAAGTGGTGCAAGAGGAGAATCGCTGCCTCAAGCAAGCC
TCAGTCATCATTCAAGCCAAAGCCGAGCAGGAGGAAGAATACATCTCAAA
CACGCTGCTAAAAAAGATTCAGGCCCTCAAAAAGGAGAAGGAGACTCTGG
CGCACCACTACGAGCGCGAGGAGGAGTGTCTGACCAACGATCTCTCCCGG
AAGCTCGACCAGCTGCGTCAGGAGAAGTGCAAGCTGGAGCAGACACTTGA
GCAGGAGCAGGAGTGCCTCGTCAACAAGCTTATGCGCAAGATTGAGAAGC
TCCAGGCGGAGACGGACAACAAGCAGACCAATCTCGAGCAGCTGCGCCGC
GAAATGGTCGAGTTGGAGAACACGCTTGAGCAGGAACAGGAAGCTCTTGT
AAACAAGCTGTGGAAGCGCATGGACAAGCTGGAGACCGAGAAGCGTTCGC
TGCAAATCAAGCTGGATCAGCCGGTTTCCGATCCGACTACGCCGCGAGAC
ATCACAAACAACGCCCATGCCAATGGTGGCGATACGGCCACCAGTTTGAG
TGCTCATATCCAGATTCTGCGCTCCGAAGTGCTTCGCTATCGCTCCGACC
TGGCGAGCGCTCAGAAGGAAGCCACTATCAAAACACAGCAGTATGCGCAG
GAAGAGAAGTCGATTCGCGAGGAAAACGCTCGCCTTCAGCGCAAGCTAAA
GCAGGAGGTGGAGCGCCGCGAAGCCCTATGCCGGCACCTCTCCGAATCGG
AATCCTCGCTGGAGATGGACGAGGAACGCTTCTACAACGAGAACCTGATG
GGAGGCGGTTCGTTCGCTGTAGCGACGGCAGCAGCCGCCGCCGCAGCTTC
AGCGGTGAGCGCCCAACGTCAACGCACCATCAGCAGTCCCGTCTCCCACA
GTCCCTCGAGTAGCCGACCTCTAAGTCCGGGCACGGCGGTGCAAAACCGC
TGCTATGCCTGCGGCCAGCTAGTGAATCGTCGTGCCAGCGAACGCTTCAT
AAAGCCAGCACTGCCAACGCCCATGCTGGGCCTGAACACTTCCGCACCGA
ACGTGCTGACCTCAACCAACCCACTGCTGGGCATTTTGGGAACCGGCAGC
TCCTCATCGTCCGCGTCCGTATCAGCTGGGAATGCCGCTGGCGGCTTTCT
CTCGAATCTGGGAGGCGAACGCCTAAGCCTTGGCTCGTCAAATTCGGCTG
GCGGCAGTGCCACCTTCTTGGCCGGCGGTGGAGGTGGAGGTCTGCTGGCC
CAGCTCACTAGCCACTCCAGCGCTTCGTCGTCGTCGTCCAATTTGATGAA
CATCAGCCTGAACAACTCGTCCAGCGGCAATCTTGTTAACAGCAGCAGCA
ACTCCTCACTGTCGGCGTTTACGCCAACCAATCCGCCCAGCTCGGCGGCC
ACGGCCTTTATCCAGCCAGCCAGTCCAATGGACACGTCCACCTGCAAGGA
CTAGGAGGATGCAGTAGCTCTCGCACAGGGATACAGAAAAATCATGACTT
ATTCACACACTTTCACACGAAAACACACTATATTCATAAACACGCACGCA
TGCAAGCAACCAGTTTAACGATCCTAAAAACATAAGAAAACACAGAAACA
AAAGATGAGAAAGTAACTATCGTAAGCTTCTCCAGGGCGACTCAAAGTCG
CCACATTTATATATGGTTAATATGTATATGTATGTTCTATTTGATCAAAA
TCTCTTAAAACCTTTCAATAACGGAATTCCTAGGCGAACGAATATTTAGC
GCTAATGTTTAAGATTTGAATGTTTTTCTAATTTCGCTCGGTTCCAGTTA
AAGTTAAGTAAAACACAGCTAATAATGAGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

LD23434.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-RA 2631 CG6664-RA 194..2423 1..2230 11150 100 Plus
CG6664-RB 2575 CG6664-RB 385..2369 246..2230 9925 100 Plus
CG6664-RC 2623 CG6664-RC 436..2415 251..2230 9900 100 Plus
CG6664-RB 2575 CG6664-RB 70..314 1..245 1225 100 Plus
CG6664-RC 2623 CG6664-RC 194..438 1..245 1225 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17003425..17004336 1374..463 4560 100 Minus
chr3L 24539361 chr3L 17002507..17003362 2229..1374 4235 99.6 Minus
chr3L 24539361 chr3L 17005181..17005425 245..1 1195 99.2 Minus
chr3L 24539361 chr3L 17004572..17004700 372..244 600 97.7 Minus
chr3L 24539361 chr3L 17004419..17004509 462..372 455 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17013993..17014904 1374..463 4560 100 Minus
3L 28110227 3L 17013074..17013930 2230..1374 4285 100 Minus
3L 28110227 3L 17015743..17015987 245..1 1225 100 Minus
3L 28110227 3L 17015140..17015268 372..244 645 100 Minus
3L 28110227 3L 17014987..17015077 462..372 455 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17007093..17008004 1374..463 4560 100 Minus
3L 28103327 3L 17006174..17007030 2230..1374 4285 100 Minus
3L 28103327 3L 17008843..17009087 245..1 1225 100 Minus
3L 28103327 3L 17008240..17008368 372..244 645 100 Minus
3L 28103327 3L 17008087..17008177 462..372 455 100 Minus
Blast to na_te.dros performed 2019-03-15 15:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2804..2961 1700..1851 126 57 Plus

LD23434.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:54:54 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17005181..17005425 1..245 99   Minus
chr3L 17002507..17003361 1375..2229 99 <- Minus
chr3L 17003425..17004336 463..1374 100 <- Minus
chr3L 17004419..17004509 372..462 100 <- Minus
chr3L 17004573..17004698 246..371 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:06 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 106..1716 244..1854 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:32:55 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 106..1716 244..1854 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:45 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RB 1..1599 256..1854 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:31 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RD 106..1716 244..1854 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:39 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 1..1599 256..1854 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:49 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 194..2422 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:32:55 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 194..2422 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:45 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 65..2293 1..2229 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:33 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 194..2422 1..2229 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:39 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
CG6664-RA 65..2293 1..2229 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:54 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17014987..17015077 372..462 100 <- Minus
3L 17015141..17015266 246..371 100 <- Minus
3L 17013075..17013929 1375..2229 100 <- Minus
3L 17013993..17014904 463..1374 100 <- Minus
3L 17015743..17015987 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:54 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17014987..17015077 372..462 100 <- Minus
3L 17015141..17015266 246..371 100 <- Minus
3L 17013075..17013929 1375..2229 100 <- Minus
3L 17013993..17014904 463..1374 100 <- Minus
3L 17015743..17015987 1..245 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:54 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17014987..17015077 372..462 100 <- Minus
3L 17015141..17015266 246..371 100 <- Minus
3L 17013075..17013929 1375..2229 100 <- Minus
3L 17013993..17014904 463..1374 100 <- Minus
3L 17015743..17015987 1..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:45 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17006175..17007029 1375..2229 100 <- Minus
arm_3L 17007093..17008004 463..1374 100 <- Minus
arm_3L 17008087..17008177 372..462 100 <- Minus
arm_3L 17008241..17008366 246..371 100 <- Minus
arm_3L 17008843..17009087 1..245 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:14 Download gff for LD23434.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17006175..17007029 1375..2229 100 <- Minus
3L 17007093..17008004 463..1374 100 <- Minus
3L 17008087..17008177 372..462 100 <- Minus
3L 17008241..17008366 246..371 100 <- Minus
3L 17008843..17009087 1..245 100   Minus

LD23434.pep Sequence

Translation from 255 to 1853

> LD23434.pep
MESPCESESSLDGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKT
KCKVVQEENRCLKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAH
HYEREEECLTNDLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQ
AETDNKQTNLEQLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQ
IKLDQPVSDPTTPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLA
SAQKEATIKTQQYAQEEKSIREENARLQRKLKQEVERREALCRHLSESES
SLEMDEERFYNENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSP
SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNV
LTSTNPLLGILGTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGG
SATFLAGGGGGGLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNS
SLSAFTPTNPPSSAATAFIQPASPMDTSTCKD*

LD23434.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10490-PA 536 GF10490-PA 1..536 1..532 2158 90.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15836-PA 530 GG15836-PA 1..530 1..532 2749 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17058-PA 516 GH17058-PA 1..516 1..532 1912 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PC 532 CG6664-PC 1..532 1..532 2647 100 Plus
CG6664-PB 532 CG6664-PB 1..532 1..532 2647 100 Plus
CG6664-PA 532 CG6664-PA 1..532 1..532 2647 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12063-PA 514 GI12063-PA 1..514 1..532 1957 80.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16067-PA 515 GL16067-PA 1..515 1..532 2085 87 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19762-PA 515 GA19762-PA 1..515 1..532 2086 86.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24355-PA 532 GM24355-PA 1..532 1..532 2782 99.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12432-PA 532 GD12432-PA 1..532 1..532 2777 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13334-PA 522 GJ13334-PA 1..522 1..532 1930 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20433-PA 532 GK20433-PA 1..532 1..532 2020 81.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22176-PA 532 GE22176-PA 1..532 1..532 2775 99.4 Plus

LD23434.hyp Sequence

Translation from 255 to 1853

> LD23434.hyp
MESPCESESSLDGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKT
KCKVVQEENRCLKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAH
HYEREEECLTNDLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQ
AETDNKQTNLEQLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQ
IKLDQPVSDPTTPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLA
SAQKEATIKTQQYAQEEKSIREENARLQRKLKQEVERREALCRHLSESES
SLEMDEERFYNENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSP
SSSRPLSPGTAVQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNV
LTSTNPLLGILGTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGG
SATFLAGGGGGGLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNS
SLSAFTPTNPPSSAATAFIQPASPMDTSTCKD*

LD23434.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG6664-PC 532 CG6664-PC 1..532 1..532 2647 100 Plus
CG6664-PB 532 CG6664-PB 1..532 1..532 2647 100 Plus
CG6664-PA 532 CG6664-PA 1..532 1..532 2647 100 Plus