Clone LD23505 Report

Search the DGRC for LD23505

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:5
Vector:pOT2
Associated Gene/TranscriptPsn-RA
Protein status:LD23505.pep: gold
Preliminary Size:2200
Sequenced Size:2072

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18803 2001-01-01 Release 2 assignment
CG18803 2001-10-10 Blastp of sequenced clone
CG18803 2003-01-01 Sim4 clustering to Release 3
Psn 2008-04-29 Release 5.5 accounting
Psn 2008-08-15 Release 5.9 accounting
Psn 2008-12-18 5.12 accounting

Clone Sequence Records

LD23505.complete Sequence

2072 bp (2072 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061316

> LD23505.complete
AAAGGGGTTCCTTTTAGAGTCATAAAAAATTGTGAGTTGACAAAGTCGCC
ACTTTTAATTTGTGCATGATTGCATGTAGAAGTTATTCTAAATACTTGTA
CCTTAAATATATTAATCCCTTCGCAAATTAATCGAACATCGATAGTTCAG
CCGGACGAGCGCACTGCCATCACTAGTATATGAGTCGCTTTAAAACAAAA
GAAAGTTTTTACCAGCTACATTTCTTTGGTTTCCTTAACTAAATCCCATC
ACACAACTACGGCTTCGCAGGGGGAGGCGTCCAGCGCTACGGAGGCGAAC
GAACGCACACCACTGATGGCTGCTGTCAATCTCCAGGCTTCGTGCTCCTC
CGGGCTCGCCTCTGAGGATGACGCCAATGTGGGCAGCCAGATAGGCGCGG
CGGAGCGTTTGGAACGACCTCCAAGGCGGCAACAGCAGCGGAACAACTAC
GGCTCCAGCAATCAGGATCAACCGGATGCTGCCATACTTGCTGTGCCCAA
TGTGGTGATGCGTGAACCTTGTGGCTCGCGCCCTTCAAGACTGACCGGTG
GAGGAGGCGGCAGTGGTGGTCCGCCCACAAATGAAATGGAGGAAGAGCAG
GGCCTGAAATACGGGGCCCAGCATGTGATCAAGTTATTCGTCCCCGTCTC
CCTTTGCATGCTGGTAGTGGTGGCTACCATCAACTCCATCAGCTTCTACA
ACAGCACGGATGTCTATCTCCTCTACACACCTTTCCATGAACAATCGCCC
GAGCCTAGTGTTAAGTTCTGGAGTGCCTTGGCGAACTCCCTGATCCTGAT
GAGCGTGGTGGTGGTGATGACCTTTTTGCTGATTGTTTTGTACAAGAAGC
GTTGCTATCGCATCATTCACGGCTGGCTGATTCTCTCCTCCTTCATGTTG
TTGTTCATTTTTACGTACTTATATTTGGAAGAGCTTCTTCGCGCCTATAA
CATACCGATGGACTACCCTACTGCACTACTGATTATGTGGAACTTTGGAG
TGGTCGGAATGATGTCCATCCATTGGCAGGGACCTCTGCGGTTGCAGCAA
GGATATCTCATTTTCGTGGCAGCCTTGATGGCCTTGGTGTTCATTAAATA
CCTGCCTGAATGGACTGCCTGGGCTGTATTGGCTGCCATTTCTATTTGGG
ATCTTATTGCTGTCCTTTCGCCAAGAGGACCCCTCCGCATTCTGGTGGAA
ACGGCTCAGGAGCGAAATGAGCAAATCTTCCCCGCTCTGATTTATTCATC
CACTGTCGTTTACGCACTTGTAAACACTGTTACGCCGCAGCAATCGCAGG
CCACAGCTTCCTCCTCGCCGTCGTCCAGCAACTCCACCACAACCACGAGG
GCCACGCAGAACTCGCTGGCTTCGCCAGAGGCAGCAGCGGCTAGTGGCCA
ACGCACAGGTAACTCCCATCCTCGACAGAATCAGCGGGATGACGGCAGTG
TACTGGCAACTGAAGGTATGCCACTTGTGACTTTTAAAAGCAATTTGCGC
GGAAACGCTGAGGCTGCGGGTTTCACGCAAGAGTGGTCAGCTAACTTGAG
CGAACGTGTGGCTCGTCGCCAGATTGAAGTTCAAAGTACTCAGAGTGGAA
ACGCTCAGCGCTCCAACGAGTATAGGACAGTAACAGCTCCGGATCAGAAT
CATCCGGATGGGCAAGAAGAACGTGGCATAAAGCTTGGCCTCGGCGACTT
CATCTTCTACTCGGTATTAGTGGGCAAGGCCTCCAGCTACGGCGACTGGA
CGACCACAATCGCTTGCTTTGTGGCCATCCTCATTGGACTCTGCCTCACT
CTTCTGCTTCTGGCCATTTGGCGCAAGGCGCTACCCGCCCTGCCCATCTC
AATAACGTTCGGATTGATATTTTGCTTCGCCACTAGTGCGGTGGTCAAGC
CGTTCATGGAGGATCTATCGGCCAAGCAGGTGTTTATATAAACTTGAAAA
GACAAGGACACATCAAGTGTCTTACAGTATCATAGTCTAACAAAGCTTTT
TGTAATCCAATTCTTTATTTAACAAAATGCATAGTAACAACCTCGACTAA
AAAAAAAAAAAAAAAAAAAAAA

LD23505.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-RA 2079 Psn-RA 1..2050 1..2050 10250 100 Plus
Psn-RB 2037 Psn-RB 1..1465 1..1465 7325 100 Plus
Psn.c 2096 Psn.c 300..1524 241..1465 6125 100 Plus
Psn-RB 2037 Psn-RB 1465..2008 1507..2050 2720 100 Plus
Psn.c 2096 Psn.c 1524..2067 1507..2050 2720 100 Plus
Psn.c 2096 Psn.c 1..240 1..240 1200 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20423790..20424165 1673..2048 1880 100 Plus
chr3L 24539361 chr3L 20423088..20423350 1245..1507 1300 99.6 Plus
chr3L 24539361 chr3L 20421773..20422013 241..481 1205 100 Plus
chr3L 24539361 chr3L 20421474..20421713 1..240 1200 100 Plus
chr3L 24539361 chr3L 20422078..20422316 481..719 1195 100 Plus
chr3L 24539361 chr3L 20422647..20422867 930..1150 1105 100 Plus
chr3L 24539361 chr3L 20422384..20422593 720..929 1050 100 Plus
chr3L 24539361 chr3L 20423556..20423723 1507..1674 840 100 Plus
chr3L 24539361 chr3L 20422939..20423038 1150..1249 500 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20434781..20435158 1673..2050 1890 100 Plus
3L 28110227 3L 20434082..20434344 1245..1507 1300 99.6 Plus
3L 28110227 3L 20432767..20433007 241..481 1205 100 Plus
3L 28110227 3L 20432468..20432707 1..240 1200 100 Plus
3L 28110227 3L 20433072..20433310 481..719 1195 100 Plus
3L 28110227 3L 20433641..20433861 930..1150 1105 100 Plus
3L 28110227 3L 20433378..20433587 720..929 1050 100 Plus
3L 28110227 3L 20434547..20434714 1507..1674 840 100 Plus
3L 28110227 3L 20433933..20434032 1150..1249 500 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20427881..20428258 1673..2050 1890 100 Plus
3L 28103327 3L 20427182..20427444 1245..1507 1300 99.6 Plus
3L 28103327 3L 20425867..20426107 241..481 1205 100 Plus
3L 28103327 3L 20425568..20425807 1..240 1200 100 Plus
3L 28103327 3L 20426172..20426410 481..719 1195 100 Plus
3L 28103327 3L 20426741..20426961 930..1150 1105 100 Plus
3L 28103327 3L 20426478..20426687 720..929 1050 100 Plus
3L 28103327 3L 20427647..20427814 1507..1674 840 100 Plus
3L 28103327 3L 20427033..20427132 1150..1249 500 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:50:03 has no hits.

LD23505.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:50:51 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20421474..20421713 1..240 100 -> Plus
chr3L 20421773..20422012 241..480 100 -> Plus
chr3L 20422078..20422316 481..719 100 -> Plus
chr3L 20422384..20422593 720..929 100 -> Plus
chr3L 20422647..20422867 930..1150 100 -> Plus
chr3L 20422940..20423038 1151..1249 100 -> Plus
chr3L 20423093..20423350 1250..1507 100 -> Plus
chr3L 20423557..20423721 1508..1672 100 -> Plus
chr3L 20423790..20424165 1673..2048 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:08 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..1626 316..1941 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:00 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..1626 316..1941 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:12 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..1626 316..1941 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:53 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..1626 316..1941 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:21 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..1626 316..1941 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:06 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..2048 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:00 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..2048 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:12 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..2048 1..2048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:53 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..2048 1..2048 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:21 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
Psn-RA 1..2048 1..2048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:51 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20434087..20434344 1250..1507 100 -> Plus
3L 20434781..20435156 1673..2048 100   Plus
3L 20434548..20434712 1508..1672 100 -> Plus
3L 20432468..20432707 1..240 100 -> Plus
3L 20432767..20433006 241..480 100 -> Plus
3L 20433072..20433310 481..719 100 -> Plus
3L 20433378..20433587 720..929 100 -> Plus
3L 20433641..20433861 930..1150 100 -> Plus
3L 20433934..20434032 1151..1249 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:51 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20434087..20434344 1250..1507 100 -> Plus
3L 20434781..20435156 1673..2048 100   Plus
3L 20434548..20434712 1508..1672 100 -> Plus
3L 20432468..20432707 1..240 100 -> Plus
3L 20432767..20433006 241..480 100 -> Plus
3L 20433072..20433310 481..719 100 -> Plus
3L 20433378..20433587 720..929 100 -> Plus
3L 20433641..20433861 930..1150 100 -> Plus
3L 20433934..20434032 1151..1249 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:50:51 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20434087..20434344 1250..1507 100 -> Plus
3L 20434781..20435156 1673..2048 100   Plus
3L 20434548..20434712 1508..1672 100 -> Plus
3L 20432468..20432707 1..240 100 -> Plus
3L 20432767..20433006 241..480 100 -> Plus
3L 20433072..20433310 481..719 100 -> Plus
3L 20433378..20433587 720..929 100 -> Plus
3L 20433641..20433861 930..1150 100 -> Plus
3L 20433934..20434032 1151..1249 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:12 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20427187..20427444 1250..1507 100 -> Plus
arm_3L 20427648..20427812 1508..1672 100 -> Plus
arm_3L 20427881..20428256 1673..2048 100   Plus
arm_3L 20425568..20425807 1..240 100 -> Plus
arm_3L 20425867..20426106 241..480 100 -> Plus
arm_3L 20426172..20426410 481..719 100 -> Plus
arm_3L 20426478..20426687 720..929 100 -> Plus
arm_3L 20426741..20426961 930..1150 100 -> Plus
arm_3L 20427034..20427132 1151..1249 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:43 Download gff for LD23505.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20427881..20428256 1673..2048 100   Plus
3L 20425568..20425807 1..240 100 -> Plus
3L 20425867..20426106 241..480 100 -> Plus
3L 20426172..20426410 481..719 100 -> Plus
3L 20426478..20426687 720..929 100 -> Plus
3L 20426741..20426961 930..1150 100 -> Plus
3L 20427034..20427132 1151..1249 100 -> Plus
3L 20427187..20427444 1250..1507 100 -> Plus
3L 20427648..20427812 1508..1672 100 -> Plus

LD23505.pep Sequence

Translation from 315 to 1940

> LD23505.pep
MAAVNLQASCSSGLASEDDANVGSQIGAAERLERPPRRQQQRNNYGSSNQ
DQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYG
AQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK
FWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFT
YLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRLQQGYLIF
VAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQER
NEQIFPALIYSSTVVYALVNTVTPQQSQATASSSPSSSNSTTTTRATQNS
LASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMPLVTFKSNLRGNAEA
AGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYRTVTAPDQNHPDGQ
EERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLLA
IWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFI*

LD23505.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10339-PA 531 GF10339-PA 2..531 3..541 2172 86.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16113-PA 522 GG16113-PA 1..522 1..541 2668 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14546-PA 536 GH14546-PA 6..536 15..541 1994 78 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-PE 541 CG18803-PE 1..541 1..541 2765 100 Plus
Psn-PA 541 CG18803-PA 1..541 1..541 2765 100 Plus
Psn-PD 527 CG18803-PD 1..527 1..541 2667 97.4 Plus
Psn-PB 527 CG18803-PB 1..527 1..541 2667 97.4 Plus
Psn-PC 508 CG18803-PC 1..508 1..541 2547 93.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13394-PA 546 GI13394-PA 25..546 27..541 1866 75.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12786-PA 531 GL12786-PA 24..531 27..541 2032 84.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15086-PA 531 GA15086-PA 24..531 27..541 2032 84.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22291-PA 527 GM22291-PA 1..527 1..541 2760 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14885-PA 527 GD14885-PA 1..527 1..541 2754 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11519-PA 532 GJ11519-PA 22..532 25..541 1894 79.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12343-PA 541 GK12343-PA 24..541 22..541 1888 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23235-PA 524 GE23235-PA 1..524 1..541 2666 94.6 Plus

LD23505.hyp Sequence

Translation from 315 to 1940

> LD23505.hyp
MAAVNLQASCSSGLASEDDANVGSQIGAAERLERPPRRQQQRNNYGSSNQ
DQPDAAILAVPNVVMREPCGSRPSRLTGGGGGSGGPPTNEMEEEQGLKYG
AQHVIKLFVPVSLCMLVVVATINSISFYNSTDVYLLYTPFHEQSPEPSVK
FWSALANSLILMSVVVVMTFLLIVLYKKRCYRIIHGWLILSSFMLLFIFT
YLYLEELLRAYNIPMDYPTALLIMWNFGVVGMMSIHWQGPLRLQQGYLIF
VAALMALVFIKYLPEWTAWAVLAAISIWDLIAVLSPRGPLRILVETAQER
NEQIFPALIYSSTVVYALVNTVTPQQSQATASSSPSSSNSTTTTRATQNS
LASPEAAAASGQRTGNSHPRQNQRDDGSVLATEGMPLVTFKSNLRGNAEA
AGFTQEWSANLSERVARRQIEVQSTQSGNAQRSNEYRTVTAPDQNHPDGQ
EERGIKLGLGDFIFYSVLVGKASSYGDWTTTIACFVAILIGLCLTLLLLA
IWRKALPALPISITFGLIFCFATSAVVKPFMEDLSAKQVFI*

LD23505.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
Psn-PE 541 CG18803-PE 1..541 1..541 2765 100 Plus
Psn-PA 541 CG18803-PA 1..541 1..541 2765 100 Plus
Psn-PD 527 CG18803-PD 1..527 1..541 2667 97.4 Plus
Psn-PB 527 CG18803-PB 1..527 1..541 2667 97.4 Plus
Psn-PC 508 CG18803-PC 1..508 1..541 2547 93.9 Plus