Clone LD23509 Report

Search the DGRC for LD23509

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:9
Vector:pOT2
Associated Gene/TranscriptAats-lys-RA
Protein status:LD23509.pep: gold
Preliminary Size:2200
Sequenced Size:1896

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12141 2001-01-01 Release 2 assignment
CG12141 2001-10-10 Blastp of sequenced clone
CG12141 2003-01-01 Sim4 clustering to Release 3
Aats-lys 2008-04-29 Release 5.5 accounting
Aats-lys 2008-08-15 Release 5.9 accounting
Aats-lys 2008-12-18 5.12 accounting

Clone Sequence Records

LD23509.complete Sequence

1896 bp (1896 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089547

> LD23509.complete
CTTCTGAGACCCCGGGATTAAACAGCGAACAACGTAACCGCATCAGCATG
GCCGCTGCAAGTGGAGAACTGTCCAAGAATGAGCTAAAGCGTCGCCTGAA
GGCCGAGCAAAAGGCCAAGGAGAAGGCTGAGAAGGCGGCCGCTGCGCCGG
CGGAAAATACTGCTGGCAAGAAGAAGAGCAGTGCCGCCGAGGAGGAGGAG
ATCTCGCCGAATGAATACTTTAAGCTGCGCTCCGCCGCCGTTCAGGAGCT
GAAACGTTCACCCGCAACGGATCCCTATCCACACAAGTTCCATGTGAGTA
GCTCGCTGGAAGACTTCATTGCCAAGTACGAGAACAGCCTCAAGGAGGGC
GAGACCCTGGAGAATGTCAAACTGAGCGTGGCTGGGCGCGTGCATGCCAT
ACGCGAGTCGGGCGCCAAGCTCATTTTCTACGATCTGCGCGGCGAGGGCG
TCAAGGTGCAGGTGATGGCCAGCGCTAAGTCCTACAAGTCGGAGGCGGAT
TTCGAAATCGATACGTCCAAATTGCGACGTGGTGATATCATCGGCGTTGT
CGGACATCCCGGCAAAACCAAGAAGGGTGAACTGTCCGTTATGCCCAGCG
AGATCAAGCTGCTATCGCCCTGTCTACACATGCTGCCCCATCTGCATTTC
GGGTTGAAGGACAAGGAGACGCGCTACCGCCAGCGCTATCTTGATCTCAT
TCTCAACAACAATGTGCGAGAGAAATTCCAGATCCGTGCCAAGATCATCT
CGTACGTGCGTCAGTTCCTGGATCGTCTGGGTTTCCTGGAGATCGAGACG
CCCATGATGAACATGATCGCCGGTGGAGCCACTGCCAAGCCCTTCGTGAC
GCATCACAATGACCTCAAGATGGATCTGTTCATGCGCATTGCTCCGGAGC
TGTATCACAAGATGCTGGTGGTGGGTGGACTCGATCGTGTGTACGAGATC
GGACGGCAGTTCCGCAACGAGGGCATCGACCTCACCCACAATCCTGAATT
CACCACGTGCGAGTTCTACATGGCGTATGCCGACTACGCTGACATTATGG
ATATCACCGAGCAGTTGGTCTCGGGAATGGTGAAAGCGATCCGTGGCTCC
TACAAGGTCATCTATCATCCGGAGGGTCCAGAGGGACCTGAGCAAGAACT
TGACTTTACGCCGCCCTTTAAGCGCGTATCCATGATCAAAACGCTGGAAG
AGAAGCTGCAGGTGAAGTTCCCCGCGGCCGACACCTTCAATTCGCCAGAG
ACGAATCAGTTCCTGTCTCAGCTGTGCGCTAAGCACCAGGTCGAGTGCCC
AGCTCCGCGCACCACTGCCCGCCTGCTGGACAAGCTCGTCGGCGAATTCA
TCGAGGAGTTTTGCGTGAATCCAACGTTCATCTGTGAGCATCCGCAGATC
ATGTCGCCGCTGGCCAAGTACCATCGCAGTATTCCCGGCCTGACGGAGCG
CTTCGAACTGTTTGTGGCCAAGAAGGAGATTTGCAACGCGTATACCGAGT
TGAACGATCCGGTTGTGCAGCGCGAGCGTTTCGAGCAGCAGGCCAGCGAC
AAGGCGGCCGGCGATGATGAGGCCCAGCTGGTCGACGAGAACTTCTGCAC
GTCCCTGGAGTACGGACTGCCGCCCACCGGTGGTTTTGGCATGGGCATCG
ATCGCCTGGCCATGTTCCTCACGGACTCCAACAACATCAAGGAGGTTCTG
CTGTTCCCCGCCATGAAACCGGAGGATGCCAACCGCACGGCAGCGGAAAC
TGCTCCCACCGCACAGCAGTAGATGGCCAACGCCGCTCACTCCACTCAGA
CCCAATCCTTGTACGTTACGCTGGTCCCGGACTAATCCCAGTTGCTAAGT
TATTCAACCAATAAACATTTTTCCCAATAACCAAAAAAAAAAAAAA

LD23509.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-lys-RA 2095 Aats-lys-RA 88..1972 1..1885 9425 100 Plus
Aats-lys.a 2287 Aats-lys.a 369..2174 80..1885 9030 100 Plus
Aats-lys-RB 2143 Aats-lys-RB 225..2030 80..1885 9030 100 Plus
Aats-lys.a 2287 Aats-lys.a 56..134 1..79 395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9498327..9499284 1699..742 4760 99.8 Minus
chrX 22417052 chrX 9499344..9500007 743..80 3320 100 Minus
chrX 22417052 chrX 9498078..9498270 1882..1690 965 100 Minus
chrX 22417052 chrX 9500434..9500512 79..1 395 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9606612..9607569 1699..742 4760 99.8 Minus
X 23542271 X 9607629..9608292 743..80 3320 100 Minus
X 23542271 X 9606360..9606555 1885..1690 980 100 Minus
X 23542271 X 9608719..9608797 79..1 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9614710..9615667 1699..742 4760 99.7 Minus
X 23527363 X 9615727..9616390 743..80 3320 100 Minus
X 23527363 X 9614458..9614653 1885..1690 980 100 Minus
X 23527363 X 9616817..9616895 79..1 395 100 Minus
Blast to na_te.dros performed 2019-03-16 16:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 7727..7764 1472..1509 118 78.9 Plus

LD23509.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:35:59 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9498078..9498268 1692..1882 100 <- Minus
chrX 9498335..9499282 744..1691 100 <- Minus
chrX 9499344..9500007 80..743 100 <- Minus
chrX 9500434..9500512 1..79 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:09 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 1..1725 48..1772 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:36:20 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 1..1725 48..1772 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:46 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 1..1725 48..1772 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:13 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 1..1725 48..1772 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:28 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 1..1725 48..1772 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:33 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 88..1969 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:36:20 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 88..1969 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:46 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 88..1969 1..1882 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:13 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 88..1969 1..1882 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:28 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
Aats-lys-RA 88..1969 1..1882 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:59 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606620..9607567 744..1691 100 <- Minus
X 9606363..9606553 1692..1882 100 <- Minus
X 9607629..9608292 80..743 100 <- Minus
X 9608719..9608797 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:59 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606620..9607567 744..1691 100 <- Minus
X 9606363..9606553 1692..1882 100 <- Minus
X 9607629..9608292 80..743 100 <- Minus
X 9608719..9608797 1..79 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:59 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
X 9606620..9607567 744..1691 100 <- Minus
X 9606363..9606553 1692..1882 100 <- Minus
X 9607629..9608292 80..743 100 <- Minus
X 9608719..9608797 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:46 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9500653..9501600 744..1691 100 <- Minus
arm_X 9500396..9500586 1692..1882 100 <- Minus
arm_X 9501662..9502325 80..743 100 <- Minus
arm_X 9502752..9502830 1..79 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:04 Download gff for LD23509.complete
Subject Subject Range Query Range Percent Splice Strand
X 9614718..9615665 744..1691 100 <- Minus
X 9615727..9616390 80..743 100 <- Minus
X 9616817..9616895 1..79 100   Minus
X 9614461..9614651 1692..1882 100 <- Minus

LD23509.hyp Sequence

Translation from 2 to 1771

> LD23509.hyp
SETPGLNSEQRNRISMAAASGELSKNELKRRLKAEQKAKEKAEKAAAAPA
ENTAGKKKSSAAEEEEISPNEYFKLRSAAVQELKRSPATDPYPHKFHVSS
SLEDFIAKYENSLKEGETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGV
KVQVMASAKSYKSEADFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSE
IKLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNNNVREKFQIRAKIIS
YVRQFLDRLGFLEIETPMMNMIAGGATAKPFVTHHNDLKMDLFMRIAPEL
YHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMD
ITEQLVSGMVKAIRGSYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEE
KLQVKFPAADTFNSPETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFI
EEFCVNPTFICEHPQIMSPLAKYHRSIPGLTERFELFVAKKEICNAYTEL
NDPVVQRERFEQQASDKAAGDDEAQLVDENFCTSLEYGLPPTGGFGMGID
RLAMFLTDSNNIKEVLLFPAMKPEDANRTAAETAPTAQQ*

LD23509.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
Aats-lys-PA 574 CG12141-PA 1..574 16..589 2963 100 Plus
Aats-lys-PC 607 CG12141-PC 42..607 24..589 2915 99.6 Plus
Aats-lys-PB 607 CG12141-PB 42..607 24..589 2915 99.6 Plus
CG31739-PC 1082 CG31739-PC 337..654 21..354 196 23.5 Plus
CG31739-PB 1082 CG31739-PB 337..654 21..354 196 23.5 Plus

LD23509.pep Sequence

Translation from 47 to 1771

> LD23509.pep
MAAASGELSKNELKRRLKAEQKAKEKAEKAAAAPAENTAGKKKSSAAEEE
EISPNEYFKLRSAAVQELKRSPATDPYPHKFHVSSSLEDFIAKYENSLKE
GETLENVKLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEA
DFEIDTSKLRRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLH
FGLKDKETRYRQRYLDLILNNNVREKFQIRAKIISYVRQFLDRLGFLEIE
TPMMNMIAGGATAKPFVTHHNDLKMDLFMRIAPELYHKMLVVGGLDRVYE
IGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDITEQLVSGMVKAIRG
SYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNSP
ETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQ
IMSPLAKYHRSIPGLTERFELFVAKKEICNAYTELNDPVVQRERFEQQAS
DKAAGDDEAQLVDENFCTSLEYGLPPTGGFGMGIDRLAMFLTDSNNIKEV
LLFPAMKPEDANRTAAETAPTAQQ*

LD23509.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22422-PA 580 GF22422-PA 1..580 1..574 2718 90.7 Plus
Dana\GF15370-PA 1132 GF15370-PA 501..722 127..341 202 27.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18967-PA 574 GG18967-PA 1..574 1..574 3010 97.7 Plus
Dere\GG22777-PA 1145 GG22777-PA 546..715 173..341 191 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17710-PA 582 GH17710-PA 1..580 1..574 2707 85.7 Plus
Dgri\GH21379-PA 533 GH21379-PA 91..525 109..554 198 23.2 Plus
Dgri\GH13102-PA 1125 GH13102-PA 498..667 173..341 182 26.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
LysRS-PA 574 CG12141-PA 1..574 1..574 2963 100 Plus
LysRS-PC 607 CG12141-PC 42..607 9..574 2915 99.6 Plus
LysRS-PB 607 CG12141-PB 42..607 9..574 2915 99.6 Plus
AspRS-m-PC 1082 CG31739-PC 337..654 6..339 196 23.5 Plus
AspRS-m-PB 1082 CG31739-PB 337..654 6..339 196 23.5 Plus
AspRS-m-PA 1082 CG31739-PA 337..654 6..339 196 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15452-PA 554 GI15452-PA 1..550 1..548 2510 86.9 Plus
Dmoj\GI14195-PA 1190 GI14195-PA 561..756 173..385 185 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27002-PA 518 GL27002-PA 170..500 233..563 1724 92.4 Plus
Dper\GL27002-PA 518 GL27002-PA 1..173 1..170 605 73 Plus
Dper\GL18794-PA 1091 GL18794-PA 436..683 127..385 184 25.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11433-PA 584 GA11433-PA 1..566 1..563 2663 87.5 Plus
Dpse\GA16436-PA 1106 GA16436-PA 451..698 127..385 185 25.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11355-PA 574 GM11355-PA 1..574 1..574 3031 98.4 Plus
Dsec\GM17213-PA 1088 GM17213-PA 493..714 127..341 201 27.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16054-PA 610 GD16054-PA 45..610 9..574 2983 98.1 Plus
Dsim\GD24088-PA 887 GD24088-PA 493..714 127..341 199 27.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19167-PA 580 GJ19167-PA 1..576 1..574 2635 86.2 Plus
Dvir\GJ17510-PA 1132 GJ17510-PA 443..689 125..385 187 24.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25859-PA 578 GK25859-PA 1..567 1..566 2671 90.1 Plus
Dwil\GK18240-PA 1078 GK18240-PA 493..688 173..385 193 25.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15441-PA 580 GE15441-PA 1..573 1..572 2993 97.6 Plus
Dyak\GE12772-PA 1141 GE12772-PA 542..711 173..341 190 27.9 Plus