Clone LD23513 Report

Search the DGRC for LD23513

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:13
Vector:pOT2
Associated Gene/TranscriptCatsup-RA
Protein status:LD23513.pep: gold
Preliminary Size:1662
Sequenced Size:1673

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10449 2001-01-01 Release 2 assignment
CG10449 2001-09-19 Blastp of sequenced clone
CG10449 2003-01-01 Sim4 clustering to Release 3
Catsup 2008-04-29 Release 5.5 accounting
Catsup 2008-08-15 Release 5.9 accounting
Catsup 2008-12-18 5.12 accounting

Clone Sequence Records

LD23513.complete Sequence

1673 bp (1673 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058528

> LD23513.complete
TTTGGCCGCAGTCCGACGCGAAACTAAAGTAAAGGACAAAATGGCCAAAC
AAGTGGCTGATTACCAGTGCAGTAAGCTCCAGTTGTACCAAAAGCTGGCA
CTGGTCGTAATCCTGGGAGCAGTGCTTTTCTCGCTCCCGGCGTTGTGCGC
CGGCCAGGGCAATCCCAGTTTCAAATACTCGCGGGAAGCCAACGAAAACT
TCGATCCGCAGAAGGCTCCACGGGCGGAGCACCATCATCATCATGATCAT
GACCACGATCATGGACACCACCACCACGGGCACGATCATGATCATGACCA
CGACCACGGGCATGATCATGGACACCATCATCACGGGCACGATCATGATC
ATGACCACGACCACGGACACCATCATCACGGGCACGATGAAAGGCACACC
AAGGCAAAGCCGGATTTGGATATGAGCACCATTTGGTTGCACTCGATCGG
CTCAACTCTTCTTATCAGTGCCGCTCCCTTCGTGCTGCTGTATATCATTC
CCCTAGACAACAGTGAGGCGATGAAGCCGCGTCTCAAAGTGCTTCTGGCC
TTTGCTTCTGGCGGTTTGTTGGGTGATGCCTTTCTGCACTTGATTCCTCA
TGCCACGCATCCACACAGTCATGGAGAACACGGCCACGATCACGGCCATG
ATCACCATCATCATCATGATGGCGAGGAGCATGAACATGGTCACAGCCAC
GATATGAGCATTGGTCTGTGGGTCCTTGGAGGAATCATTGCCTTCCTTTC
AGTGGAGAAACTGGTACGCATTCTAAAGGGCGGTCATGGAGGACACGGCC
ACAGCCATGGAGCACCAAAGCCAAAACCAGTGCCTGCTAAGAAAAAGTCC
TCTGACAAAGAAGACAGCGGAGATGGAGACAAACCGGCAAAGCCAGCCAA
GATCAAGTCCAAGAAACCAGAAGCGGAGCCAGAAGGCGAAGTGGAGATTT
CCGGCTACTTGAATTTGGCGGCGGACTTTGCTCACAACTTCACCGATGGC
CTGGCCATCGGCGCCTCCTATTTGGCGGGCAACAGCATTGGCATTGTGAC
CACTATCACTATTCTGCTGCACGAAGTGCCCCATGAGATTGGTGACTTTG
CCATTCTTATAAAGTCTGGCTGTTCCAGGCGAAAGGCAATGCTTCTGCAG
CTCGTCACAGCGCTCGGAGCTTTGGCGGGCACAGCGCTAGCTCTTCTGGG
AGCTGGAGGCGGGGACGGATCGGCCCCATGGGTCTTGCCCTTCACAGCCG
GCGGTTTTATTTACATCGCAACAGTGAGTGTCCTGCCGGAGCTGCTTGAG
GAGTCTACGAAACTGAAACAGTCGCTGAAGGAAATCTTTGCGCTGCTAAC
CGGCGTAGCCCTAATGATCGTTATCGCCAAGTTCGAGTAATATCAAAATT
GTGGAAAGTTAACACAAAAAAGATCTAATTGCATGTACTGAAAGTGTGCC
GCAAACAATTTGAAAGATTTCTGTTCGTTACCTACTCAAAACGATGAGCA
ACTACTTAAATTTCTTATATTTCAACAGTCAGTAACCGCTATTAGTTCCC
AATATAAACAATGCGGCGTTATTTAAGATTTTTTAAGCCTTCCAAATTTG
TGCTTCACTTCGAAATGAAATTTTTATAAATAGTCAAAATTACACTGTAA
AAAGAAAAAAAAAAAAAAAAAAA

LD23513.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-RA 1847 Catsup-RA 193..1847 1..1655 8275 100 Plus
CG15173-RA 1509 CG15173-RA 1357..1509 1656..1504 765 100 Minus
CG15173.b 1428 CG15173.b 1347..1428 1656..1575 410 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19040998..19042233 419..1654 6150 99.8 Plus
chr2L 23010047 chr2L 19040525..19040943 1..419 2095 100 Plus
chr2L 23010047 chr2L 19040781..19040843 314..376 240 92.1 Plus
chr2L 23010047 chr2L 19040838..19040900 257..319 240 92.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19043616 419..1656 6190 100 Plus
2L 23513712 2L 19041906..19042324 1..419 2095 100 Plus
2L 23513712 2L 19042162..19042224 314..376 240 92.1 Plus
2L 23513712 2L 19042219..19042281 257..319 240 92.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19042379..19043616 419..1656 6190 100 Plus
2L 23513712 2L 19041906..19042324 1..419 2095 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:41:08 has no hits.

LD23513.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:41:48 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19040525..19040753 1..229 100 == Plus
chr2L 19040903..19040943 379..419 100 -> Plus
chr2L 19040999..19042233 420..1654 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:10 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 41..1390 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:36 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 41..1390 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 04:56:06 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 41..1390 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:13 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 41..1390 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:41:43 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 1..1350 41..1390 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:18 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 193..1846 1..1654 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:36 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 193..1846 1..1654 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:06 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 45..1698 1..1654 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:13 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 193..1846 1..1654 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:43 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
Catsup-RA 45..1698 1..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:48 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041906..19042324 1..419 100 -> Plus
2L 19042380..19043614 420..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:48 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041906..19042324 1..419 100 -> Plus
2L 19042380..19043614 420..1654 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:41:48 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041906..19042324 1..419 100 -> Plus
2L 19042380..19043614 420..1654 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:06 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19041906..19042324 1..419 100 -> Plus
arm_2L 19042380..19043614 420..1654 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:04 Download gff for LD23513.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19041906..19042324 1..419 100 -> Plus
2L 19042380..19043614 420..1654 100   Plus

LD23513.hyp Sequence

Translation from 0 to 1389

> LD23513.hyp
LAAVRRETKVKDKMAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCA
GQGNPSFKYSREANENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDH
DHGHDHGHHHHGHDHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIG
STLLISAAPFVLLYIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPH
ATHPHSHGEHGHDHGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLS
VEKLVRILKGGHGGHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAK
IKSKKPEAEPEGEVEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVT
TITILLHEVPHEIGDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLG
AGGGDGSAPWVLPFTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLT
GVALMIVIAKFE*

LD23513.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-PA 449 CG10449-PA 1..449 14..462 2446 100 Plus
Zip99C-PJ 355 CG7816-PJ 34..349 143..458 461 34.9 Plus
Zip99C-PI 355 CG7816-PI 34..349 143..458 461 34.9 Plus
Zip99C-PH 355 CG7816-PH 34..349 143..458 461 34.9 Plus
Zip99C-PC 355 CG7816-PC 34..349 143..458 461 34.9 Plus

LD23513.pep Sequence

Translation from 40 to 1389

> LD23513.pep
MAKQVADYQCSKLQLYQKLALVVILGAVLFSLPALCAGQGNPSFKYSREA
NENFDPQKAPRAEHHHHHDHDHDHGHHHHGHDHDHDHDHGHDHGHHHHGH
DHDHDHDHGHHHHGHDERHTKAKPDLDMSTIWLHSIGSTLLISAAPFVLL
YIIPLDNSEAMKPRLKVLLAFASGGLLGDAFLHLIPHATHPHSHGEHGHD
HGHDHHHHHDGEEHEHGHSHDMSIGLWVLGGIIAFLSVEKLVRILKGGHG
GHGHSHGAPKPKPVPAKKKSSDKEDSGDGDKPAKPAKIKSKKPEAEPEGE
VEISGYLNLAADFAHNFTDGLAIGASYLAGNSIGIVTTITILLHEVPHEI
GDFAILIKSGCSRRKAMLLQLVTALGALAGTALALLGAGGGDGSAPWVLP
FTAGGFIYIATVSVLPELLEESTKLKQSLKEIFALLTGVALMIVIAKFE*

LD23513.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14692-PA 441 GF14692-PA 1..441 1..449 1523 80.6 Plus
Dana\GF16226-PA 357 GF16226-PA 36..352 130..446 460 36.6 Plus
Dana\GF23796-PA 582 GF23796-PA 247..536 132..418 346 29.9 Plus
Dana\GF24332-PA 715 GF24332-PA 537..688 297..449 273 37.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21151-PA 447 GG21151-PA 1..447 1..449 1609 93.8 Plus
Dere\GG11991-PA 355 GG11991-PA 34..350 130..446 454 35.2 Plus
Dere\GG15710-PA 571 GG15710-PA 242..558 132..446 362 31.9 Plus
Dere\GG14322-PA 699 GG14322-PA 536..687 297..449 266 36.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:45:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10891-PA 376 GH10891-PA 59..376 128..449 1152 83 Plus
Dgri\GH13993-PA 355 GH13993-PA 34..346 130..442 438 34.1 Plus
Dgri\GH16665-PA 581 GH16665-PA 242..571 132..449 384 31 Plus
Dgri\GH15311-PA 714 GH15311-PA 545..696 297..449 274 36.6 Plus
Dgri\GH22517-PA 570 GH22517-PA 401..552 297..449 272 36.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Catsup-PA 449 CG10449-PA 1..449 1..449 2446 100 Plus
Zip99C-PJ 355 CG7816-PJ 34..349 130..445 461 34.9 Plus
Zip99C-PI 355 CG7816-PI 34..349 130..445 461 34.9 Plus
Zip99C-PH 355 CG7816-PH 34..349 130..445 461 34.9 Plus
Zip99C-PC 355 CG7816-PC 34..349 130..445 461 34.9 Plus
Zip99C-PE 355 CG7816-PE 34..349 130..445 461 34.9 Plus
Zip99C-PA 355 CG7816-PA 34..349 130..445 461 34.9 Plus
Zip99C-PD 355 CG7816-PD 34..349 130..445 461 34.9 Plus
Zip99C-PF 355 CG7816-PF 34..349 130..445 461 34.9 Plus
Zip99C-PG 355 CG7816-PG 34..349 130..445 461 34.9 Plus
Zip71B-PC 572 CG10006-PC 243..559 132..446 428 32.2 Plus
Zip71B-PB 572 CG10006-PB 243..559 132..446 428 32.2 Plus
foi-PD 706 CG6817-PD 466..687 203..449 282 27.9 Plus
foi-PC 706 CG6817-PC 466..687 203..449 282 27.9 Plus
foi-PB 706 CG6817-PB 466..687 203..449 282 27.9 Plus
foi-PA 706 CG6817-PA 466..687 203..449 282 27.9 Plus
GM130-PA 795 CG11061-PA 539..613 49..119 203 48.1 Plus
CG15022-PA 295 CG15022-PA 29..85 67..117 190 55.2 Plus
GM130-PA 795 CG11061-PA 569..632 66..126 184 50 Plus
GM130-PA 795 CG11061-PA 556..623 41..112 172 42.5 Plus
GramD1B-PG 804 CG34394-PG 512..666 51..225 171 26.6 Plus
GramD1B-PC 1239 CG34394-PC 947..1101 51..225 171 26.6 Plus
GramD1B-PE 1249 CG34394-PE 957..1111 51..225 171 26.6 Plus
psq-PN 1043 CG2368-PN 262..448 33..191 166 26.9 Plus
psq-PA 1046 CG2368-PA 262..448 33..191 166 26.9 Plus
psq-PB 1064 CG2368-PB 262..448 33..191 166 26.9 Plus
psq-PC 1064 CG2368-PC 262..448 33..191 166 26.9 Plus
stx-PB 1122 CG32676-PB 298..367 61..131 166 42.3 Plus
stx-PA 1122 CG32676-PA 298..367 61..131 166 42.3 Plus
psq-PM 1123 CG2368-PM 262..448 33..191 166 26.9 Plus
GramD1B-PH 1206 CG34394-PH 923..1068 51..225 164 25.7 Plus
CG15022-PA 295 CG15022-PA 35..83 63..113 163 51.9 Plus
Pde11-PG 1407 CG34341-PG 1282..1398 77..220 161 30.8 Plus
Pde11-PC 1407 CG34341-PC 1282..1398 77..220 161 30.8 Plus
Pde11-PF 1451 CG34341-PF 1326..1442 77..220 161 30.8 Plus
Pde11-PB 1451 CG34341-PB 1326..1442 77..220 161 30.8 Plus
CG13482-PA 102 CG13482-PA 33..100 60..113 160 44.1 Plus
ZnT86D-PA 366 CG6672-PA 158..238 66..140 155 38.3 Plus
Cpr35B-PA 218 CG3474-PA 158..218 63..113 154 45.2 Plus
Cpr35B-PA 218 CG3474-PA 116..205 46..119 150 34.8 Plus
CG43349-PB 70 CG43349-PB 5..59 60..114 143 48.2 Plus
CG43349-PA 70 CG43349-PA 5..59 60..114 143 48.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13064-PA 437 GI13064-PA 1..437 1..449 1258 72.1 Plus
Dmoj\GI22338-PA 354 GI22338-PA 34..349 130..446 471 36.4 Plus
Dmoj\GI11351-PA 579 GI11351-PA 241..566 132..446 375 30.8 Plus
Dmoj\GI12906-PA 702 GI12906-PA 530..681 297..449 272 36.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18911-PA 448 GL18911-PA 1..448 1..449 1354 76.9 Plus
Dper\GL13475-PA 360 GL13475-PA 34..355 130..446 462 36.8 Plus
Dper\GL24708-PA 575 GL24708-PA 250..562 132..446 343 29.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10324-PA 448 GA10324-PA 1..448 1..449 1352 76.6 Plus
Dpse\GA20606-PB 360 GA20606-PB 34..355 130..446 462 36.8 Plus
Dpse\GA20606-PA 360 GA20606-PA 34..355 130..446 462 36.8 Plus
Dpse\GA10004-PA 575 GA10004-PA 250..562 132..446 343 29.8 Plus
Dpse\GA23845-PA 718 GA23845-PA 546..697 297..449 277 37.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17316-PA 434 GM17316-PA 1..434 1..449 2124 93.6 Plus
Dsec\GM12209-PA 355 GM12209-PA 34..350 130..446 455 35.7 Plus
Dsec\GM25497-PA 572 GM25497-PA 243..559 132..446 353 31.2 Plus
Dsec\GM25063-PA 705 GM25063-PA 535..686 297..449 273 37.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Catsup-PA 431 GD24175-PA 1..431 1..449 2076 93.3 Plus
Dsim\GD17600-PA 355 GD17600-PA 34..350 130..446 455 35.7 Plus
Dsim\GD14517-PA 572 GD14517-PA 243..559 132..446 363 31.8 Plus
Dsim\GD14101-PA 706 GD14101-PA 536..687 297..449 272 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11603-PA 435 GJ11603-PA 1..435 1..449 1262 73.6 Plus
Dvir\GJ10525-PA 355 GJ10525-PA 34..350 130..446 444 35.2 Plus
Dvir\GJ11605-PA 571 GJ11605-PA 219..555 114..446 387 31.2 Plus
Dvir\GJ13046-PA 697 GJ13046-PA 525..676 297..449 270 35.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24165-PA 441 GK24165-PA 1..441 1..449 1327 74.1 Plus
Dwil\GK13376-PA 355 GK13376-PA 35..350 130..446 465 35.1 Plus
Dwil\GK20356-PA 736 GK20356-PA 558..709 297..449 284 37.9 Plus
Dwil\GK10549-PA 441 GK10549-PA 196..437 113..372 267 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13224-PA 453 GE13224-PA 1..453 1..449 1485 89.4 Plus
Dyak\GE10416-PA 355 GE10416-PA 34..350 130..446 457 36 Plus
Dyak\GE22041-PA 571 GE22041-PA 243..558 132..446 354 28.6 Plus
Dyak\GE20750-PA 708 GE20750-PA 538..689 297..449 268 36.6 Plus