Clone LD23514 Report

Search the DGRC for LD23514

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:14
Vector:pOT2
Associated Gene/Transcriptpug-RB
Protein status:LD23514.pep: gold
Sequenced Size:3162

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
pug-RB 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

LD23514.complete Sequence

3162 bp assembled on 2011-01-28

GenBank Submission: BT125950.1

> LD23514.complete
CTCCAGCAAAAACGTGTGTTTTTGTTGCGCTGCTATTTGTTTAATTTAAT
TTTTAAGTTGAAACAATTATGTCGGCGCAATATCAAAGATTCCTGAAAGT
ACTAGAAAAGTGGCCAGCGGAGAAATCAAAAGTCGGCAGCGGAGAGTGGA
CAGCAGAGCCGGCTATCAAGATGAGTGGGGCCAAGATCATATCGGGCACG
GCGGTGGCCAAATCCATTCGCGAAGAGCTGCGTAACGAGGTGACGGCTAT
GAGCAAGCAATTGGCGGATTTTGTGCCCGGCTTAAGGATTGTCCAGGTTG
GTGGACGTGAGGACTCCAACGTTTACATCCGCATGAAGATCAAGGCGGCT
ACGGAGATCGGTATCGATGCCGCCCACGTCCAGCTGCCCCGATCCATCAC
CGAGGTGGAATTGCTCGATAAGATAAACGATCTGAACGAGGACCCCCGGG
TGCACGGCATCATAGTGCAAATGCCCCTGGATTGTGACACACCCATCGAT
TCGCACCGAATTACGGACGCCGTTTCCCCGGAGAAGGATGTTGACGGCTT
GCACACGGTTAACGAAGGTCGCCTGGCCATCGGTGACCTTGGTGGTTTCC
TGCCCTGCACTCCTTGGGGTTGCCTGGAGTTAATTCGCCGTTCTGGAGTA
GAGATCGCCGGAGCCAGGGCTGTGGTTCTGGGACGCAGCAAGATCGTGGG
CACTCCCGCCGCCGAACTGCTCAAGTGGGCCAATGCCACGGTCACAGTGT
GCCACTCAAAGACCCGCAACCTGGAGGAGATCACCCGAAGTGCAGACATT
CTGGTGGTCGGAATTGGAGTGGCCGAGATGGTTAAGGGATCGTGGATAAA
GCCCGGAGCAGTGGTCATCGATTGCGGCATCAATGTGAAGCCAGACGCCA
GCAAGGCCAGTGGCAGCAAGCTGGTCGGGGACGTGGACTACGCGGAAGCT
CTCCAAGTGGCAGGACATTTGACGCCAGTGCCCGGCGGCGTGGGACCCAT
GACGGTGGCCATGCTTATGAAAAACACCGTGCGATCTGCGGCCCGATTCC
TTGAGCGTCTTGCTAAGAGCCAGTGGGCCCTTCAAACGCTGCCCCTCAAG
CCCCAGCGTCCCGTGCCCAGCGATATTGTGATTGCCCGTGCCCAAAAACC
GAAGGACATTGCCGTGCTGGCCAAGGAGATTGGTCTGGAAGCTCGTGAGG
TTTCCTTGTACGGAAATAAGAAGGCCAAGATTTCACTGTCAGTGTTGGAG
CGTCTGAAGGACAAGGAGGTGGGTCACTATGTGGTTGTAGCCGGTATGAC
ACCAACGCCTTTGGGTGAGGGTAAGACCACCACACTAATGGGCTTGGTCC
AGGCTCTCGGCGCGCACAAGCTGAGAAACACCATGGCTGCTCTGCGACAG
CCCTCCCAAGGTCCAACCTTTGGCATCAAAGGAGGAGCTGCTGGCGGCGG
ATACGCCCAGGTGATTCCCATGGAGGAGTTCAATCTCCATCTGACAGGAG
ACATTCATGCGGTATCGGCAGCCAATAACTTGCTGGCCGCCCAGCTGGAC
ACCCGCATCTTCCACGAGAATACCCAAAAGGACAAGGCCTTGTATGACAG
ATTGGTGCCCGCGATCAAGGGTCAGCGGAAATTCAGCCCCATTCAGCTAC
GCCGGCTCCAGAAATTGGGAATCACCAAAACCGATCCCGATACCCTTACC
GCTGACGAATACGGACCTTTTGCCCGGCTGGACATCGATCCGGACACGAT
TATGTGGGAGCGTGTGGTGGACATCAACGATCGGTACCTACGCACCATTA
CCGTTGGGCAATCGCCCACTGAAAAGGGTATTTCGAGGGAGACCCGGTTC
TCCATCTCGGTGGCCAGCGAGATCATGGCTGTGCTAGCACTATCCCGAAG
TCTGGAGGACATGAAGCAGCGGCTGGCTGACATGGTGGTGGCATTCGACA
AACGAGGCAAGCCCGTAACCGCTGACGATTTGGGTGTCACCGGTGCCCTG
GCAGTTCTTTTGAAGGACGCTCTCGAGCCGAACCTGATGCAGTCGCTCGA
GGGAACTCCAGTGCTGGTGCACGCTGGTCCCTTTGCCAACATCGCCCACG
GTTGCAACTCGATCATCGCTGATGAAGTCGGCCTAAAGCTGGTTGGTAAA
AATGGATTTGTCTGCACGGAGGCCGGGTTCGGATCAGATATTGGCATGGA
AAAGTTTTGCAACATTAAGTGTCGGACATCCGGTCGCAAGCCGAACGCCA
TGGTGCTGGTAGCCACTGTGAGGGCCATCAAGATGCACGGCGGCGGAGCT
CCCGTCACTCCCGGAGCCCCCTTGAACAAGCAGTACACCGAGGAGAACTT
GGAGCTCGTCCAGAAGGGTCTGCCCAATCTGCTGCAGCACATCGAGAACG
GAAAGGCCTTCGGCATGCCAGTGGTGGTGAGCCTTAATGCTCATTCAGCA
GACACCCCGGCGGAGCATGAGTTGGTCAAAAAGGCTGCTCTGGAGGCAGG
TGCATTCGCCGCCGTAGTCTCCACTCACTGGGCGGACGGAGGAGCCGGAG
CCGTTCAGCTGGCCGATGCCGTGATCAAGGCCTGCGAACAGGGCAATCAA
TTCCGATTGCTCTACGATCTGGAGCTGCCGCTGGTGGATAAGATGAACAA
GATCGCTACGACGATGTACGGCGCTGGAAAGGTGGTGCTCTCGCCGGCGG
CTGAGGAGAAGGTCAAACGCCTGACGGATGCGGGTTTTGGCAATCTACCT
ATCTGCATGTCCAAAGTCTCCGGCTCCTTCACCGGCGATGCCAAAATCAA
AGGCGCCCCCAAGGGCTTCACCCTGGACGTTGAGGACGTATATGTTTCAG
CCGGAGCCGGCTTTGTGGTCGCCATGTGCGGTGAGGTCACCAAAATGCCG
GGTCTTCCCACCCGCCCGGCGATCTACGATATCGATCTGAATACGGAAAC
CGGAGAAATTGAGGGCCTATTTTAGACGGCAACCTGGACAAGGGAGAAGA
TTCCTAATAACTTTCAACGCCTTTTCACATCTAATTCCAGAGTAGTAACA
AATTTATCGTTTTAACTTGTATATAAATGATATAGAGATAAGATTTAAAA
GTCGGTAAACTAATATACATTTCTGACGATTTGAGTTTTCTTTAAAAAAA
AAAAAAAAAAAA

LD23514.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6526543..6528384 892..2733 8985 99.2 Plus
chr3R 27901430 chr3R 6525761..6526234 421..894 2355 99.8 Plus
chr3R 27901430 chr3R 6528449..6528860 2732..3143 2015 99.3 Plus
chr3R 27901430 chr3R 6525429..6525639 212..422 1055 100 Plus
chr3R 27901430 chr3R 6522208..6522346 1..139 695 100 Plus
chr3R 27901430 chr3R 6525292..6525366 137..211 375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10700998..10702840 891..2733 9215 100 Plus
3R 32079331 3R 10700217..10700690 421..894 2370 100 Plus
3R 32079331 3R 10702905..10703320 2732..3147 2080 100 Plus
3R 32079331 3R 10699885..10700095 212..422 1055 100 Plus
3R 32079331 3R 10696664..10696802 1..139 695 100 Plus
3R 32079331 3R 10699748..10699822 137..211 375 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10441829..10443671 891..2733 9215 100 Plus
3R 31820162 3R 10441048..10441521 421..894 2370 100 Plus
3R 31820162 3R 10443736..10444151 2732..3147 2080 100 Plus
3R 31820162 3R 10440716..10440926 212..422 1055 100 Plus
3R 31820162 3R 10437495..10437633 1..139 695 100 Plus
3R 31820162 3R 10440579..10440653 137..211 375 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:32:28 has no hits.

LD23514.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:33:10 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6522208..6522346 1..139 100 -> Plus
chr3R 6525295..6525366 140..211 100 -> Plus
chr3R 6525429..6525639 212..422 100 -> Plus
chr3R 6525763..6526234 423..894 99 -> Plus
chr3R 6526546..6528383 895..2732 99 -> Plus
chr3R 6528450..6528860 2733..3143 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-28 16:00:00 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RD 1..2907 69..2975 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:43:17 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RB 1..2907 69..2975 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:02:21 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RB 1..2907 69..2975 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-28 16:00:00 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RD 15..3130 1..3116 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:43:17 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RB 147..3289 1..3143 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:02:21 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
pug-RB 131..3273 1..3143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:33:10 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10696664..10696802 1..139 100 -> Plus
3R 10699751..10699822 140..211 100 -> Plus
3R 10699885..10700095 212..422 100 -> Plus
3R 10700219..10700690 423..894 100 -> Plus
3R 10701002..10702839 895..2732 100 -> Plus
3R 10702906..10703316 2733..3143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:33:10 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10696664..10696802 1..139 100 -> Plus
3R 10699751..10699822 140..211 100 -> Plus
3R 10699885..10700095 212..422 100 -> Plus
3R 10700219..10700690 423..894 100 -> Plus
3R 10701002..10702839 895..2732 100 -> Plus
3R 10702906..10703316 2733..3143 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:33:10 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10696664..10696802 1..139 100 -> Plus
3R 10699751..10699822 140..211 100 -> Plus
3R 10699885..10700095 212..422 100 -> Plus
3R 10700219..10700690 423..894 100 -> Plus
3R 10701002..10702839 895..2732 100 -> Plus
3R 10702906..10703316 2733..3143 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:43:17 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6525473..6525544 140..211 100 -> Plus
arm_3R 6525607..6525817 212..422 100 -> Plus
arm_3R 6522386..6522524 1..139 100 -> Plus
arm_3R 6525941..6526412 423..894 100 -> Plus
arm_3R 6526724..6528561 895..2732 100 -> Plus
arm_3R 6528628..6529038 2733..3143 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:56:10 Download gff for LD23514.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10440716..10440926 212..422 100 -> Plus
3R 10441050..10441521 423..894 100 -> Plus
3R 10441833..10443670 895..2732 100 -> Plus
3R 10443737..10444147 2733..3143 100   Plus
3R 10437495..10437633 1..139 100 -> Plus
3R 10440582..10440653 140..211 100 -> Plus

LD23514.pep Sequence

Translation from 68 to 2974

> LD23514.pep
MSAQYQRFLKVLEKWPAEKSKVGSGEWTAEPAIKMSGAKIISGTAVAKSI
REELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGID
AAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITD
AVSPEKDVDGLHTVNEGRLAIGDLGGFLPCTPWGCLELIRRSGVEIAGAR
AVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIG
VAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGH
LTPVPGGVGPMTVAMLMKNTVRSAARFLERLAKSQWALQTLPLKPQRPVP
SDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKE
VGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPT
FGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHE
NTQKDKALYDRLVPAIKGQRKFSPIQLRRLQKLGITKTDPDTLTADEYGP
FARLDIDPDTIMWERVVDINDRYLRTITVGQSPTEKGISRETRFSISVAS
EIMAVLALSRSLEDMKQRLADMVVAFDKRGKPVTADDLGVTGALAVLLKD
ALEPNLMQSLEGTPVLVHAGPFANIAHGCNSIIADEVGLKLVGKNGFVCT
EAGFGSDIGMEKFCNIKCRTSGRKPNAMVLVATVRAIKMHGGGAPVTPGA
PLNKQYTEENLELVQKGLPNLLQHIENGKAFGMPVVVSLNAHSADTPAEH
ELVKKAALEAGAFAAVVSTHWADGGAGAVQLADAVIKACEQGNQFRLLYD
LELPLVDKMNKIATTMYGAGKVVLSPAAEEKVKRLTDAGFGNLPICMSKV
SGSFTGDAKIKGAPKGFTLDVEDVYVSAGAGFVVAMCGEVTKMPGLPTRP
AIYDIDLNTETGEIEGLF*

LD23514.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17545-PA 931 GF17545-PA 1..931 35..968 4360 90.1 Plus
Dana\GF18431-PA 306 GF18431-PA 2..295 38..326 560 45.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17628-PA 968 GG17628-PA 1..968 1..968 5011 97.8 Plus
Dere\GG17397-PA 303 GG17397-PA 2..298 38..329 551 44.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14901-PA 934 GH14901-PA 3..934 38..968 3913 79.7 Plus
Dgri\GH18238-PA 303 GH18238-PA 2..300 38..333 542 43.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
pug-PD 968 CG4067-PD 1..968 1..968 4926 100 Plus
pug-PB 968 CG4067-PB 1..968 1..968 4926 100 Plus
pug-PE 965 CG4067-PE 21..965 24..968 4804 99.9 Plus
pug-PC 934 CG4067-PC 1..934 35..968 4747 100 Plus
pug-PA 934 CG4067-PA 1..934 35..968 4747 100 Plus
Nmdmc-PC 303 CG18466-PC 2..295 38..326 551 45.3 Plus
Nmdmc-PA 303 CG18466-PA 2..295 38..326 551 45.3 Plus
Nmdmc-PB 309 CG18466-PB 8..301 38..326 551 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23694-PA 935 GI23694-PA 5..935 38..968 3983 83.7 Plus
Dmoj\GI10194-PA 301 GI10194-PA 2..294 38..326 549 43.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11980-PA 970 GL11980-PA 1..970 1..968 4461 88 Plus
Dper\GL12491-PA 307 GL12491-PA 2..290 38..321 554 44.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13173-PA 970 GA13173-PA 1..970 1..968 4455 87.9 Plus
Dpse\GA14943-PA 307 GA14943-PA 2..290 38..321 554 44.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23891-PA 968 GM23891-PA 1..968 1..968 5068 99 Plus
Dsec\GM26287-PA 303 GM26287-PA 2..298 38..329 551 44.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:34:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18702-PA 968 GD18702-PA 1..968 1..968 5057 98.8 Plus
Dsim\GD20823-PA 303 GD20823-PA 2..298 38..329 553 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:34:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23253-PA 935 GJ23253-PA 5..935 38..968 4028 83.8 Plus
Dvir\GJ23482-PA 301 GJ23482-PA 2..294 38..326 547 43.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11804-PA 934 GK11804-PA 1..934 35..968 4204 86 Plus
Dwil\GK14062-PA 304 GK14062-PA 2..295 38..326 586 46.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26043-PA 968 GE26043-PA 1..968 1..968 5031 98 Plus
Dyak\GE24801-PA 303 GE24801-PA 2..298 38..329 558 45.2 Plus

LD23514.hyp Sequence

Translation from 68 to 2974

> LD23514.hyp
MSAQYQRFLKVLEKWPAEKSKVGSGEWTAEPAIKMSGAKIISGTAVAKSI
REELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGID
AAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITD
AVSPEKDVDGLHTVNEGRLAIGDLGGFLPCTPWGCLELIRRSGVEIAGAR
AVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIG
VAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGH
LTPVPGGVGPMTVAMLMKNTVRSAARFLERLAKSQWALQTLPLKPQRPVP
SDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKE
VGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPT
FGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHE
NTQKDKALYDRLVPAIKGQRKFSPIQLRRLQKLGITKTDPDTLTADEYGP
FARLDIDPDTIMWERVVDINDRYLRTITVGQSPTEKGISRETRFSISVAS
EIMAVLALSRSLEDMKQRLADMVVAFDKRGKPVTADDLGVTGALAVLLKD
ALEPNLMQSLEGTPVLVHAGPFANIAHGCNSIIADEVGLKLVGKNGFVCT
EAGFGSDIGMEKFCNIKCRTSGRKPNAMVLVATVRAIKMHGGGAPVTPGA
PLNKQYTEENLELVQKGLPNLLQHIENGKAFGMPVVVSLNAHSADTPAEH
ELVKKAALEAGAFAAVVSTHWADGGAGAVQLADAVIKACEQGNQFRLLYD
LELPLVDKMNKIATTMYGAGKVVLSPAAEEKVKRLTDAGFGNLPICMSKV
SGSFTGDAKIKGAPKGFTLDVEDVYVSAGAGFVVAMCGEVTKMPGLPTRP
AIYDIDLNTETGEIEGLF*

LD23514.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
pug-PD 968 CG4067-PD 1..968 1..968 4926 100 Plus
pug-PB 968 CG4067-PB 1..968 1..968 4926 100 Plus
pug-PE 965 CG4067-PE 21..965 24..968 4804 99.9 Plus
pug-PC 934 CG4067-PC 1..934 35..968 4747 100 Plus
pug-PA 934 CG4067-PA 1..934 35..968 4747 100 Plus