BDGP Sequence Production Resources |
Search the DGRC for LD23514
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 235 |
Well: | 14 |
Vector: | pOT2 |
Associated Gene/Transcript | pug-RB |
Protein status: | LD23514.pep: gold |
Sequenced Size: | 3162 |
Gene | Date | Evidence |
---|---|---|
pug-RB | 2010-11-11 | Gleaning Pick By Joe Carlson |
3162 bp assembled on 2011-01-28
GenBank Submission: BT125950.1
> LD23514.complete CTCCAGCAAAAACGTGTGTTTTTGTTGCGCTGCTATTTGTTTAATTTAAT TTTTAAGTTGAAACAATTATGTCGGCGCAATATCAAAGATTCCTGAAAGT ACTAGAAAAGTGGCCAGCGGAGAAATCAAAAGTCGGCAGCGGAGAGTGGA CAGCAGAGCCGGCTATCAAGATGAGTGGGGCCAAGATCATATCGGGCACG GCGGTGGCCAAATCCATTCGCGAAGAGCTGCGTAACGAGGTGACGGCTAT GAGCAAGCAATTGGCGGATTTTGTGCCCGGCTTAAGGATTGTCCAGGTTG GTGGACGTGAGGACTCCAACGTTTACATCCGCATGAAGATCAAGGCGGCT ACGGAGATCGGTATCGATGCCGCCCACGTCCAGCTGCCCCGATCCATCAC CGAGGTGGAATTGCTCGATAAGATAAACGATCTGAACGAGGACCCCCGGG TGCACGGCATCATAGTGCAAATGCCCCTGGATTGTGACACACCCATCGAT TCGCACCGAATTACGGACGCCGTTTCCCCGGAGAAGGATGTTGACGGCTT GCACACGGTTAACGAAGGTCGCCTGGCCATCGGTGACCTTGGTGGTTTCC TGCCCTGCACTCCTTGGGGTTGCCTGGAGTTAATTCGCCGTTCTGGAGTA GAGATCGCCGGAGCCAGGGCTGTGGTTCTGGGACGCAGCAAGATCGTGGG CACTCCCGCCGCCGAACTGCTCAAGTGGGCCAATGCCACGGTCACAGTGT GCCACTCAAAGACCCGCAACCTGGAGGAGATCACCCGAAGTGCAGACATT CTGGTGGTCGGAATTGGAGTGGCCGAGATGGTTAAGGGATCGTGGATAAA GCCCGGAGCAGTGGTCATCGATTGCGGCATCAATGTGAAGCCAGACGCCA GCAAGGCCAGTGGCAGCAAGCTGGTCGGGGACGTGGACTACGCGGAAGCT CTCCAAGTGGCAGGACATTTGACGCCAGTGCCCGGCGGCGTGGGACCCAT GACGGTGGCCATGCTTATGAAAAACACCGTGCGATCTGCGGCCCGATTCC TTGAGCGTCTTGCTAAGAGCCAGTGGGCCCTTCAAACGCTGCCCCTCAAG CCCCAGCGTCCCGTGCCCAGCGATATTGTGATTGCCCGTGCCCAAAAACC GAAGGACATTGCCGTGCTGGCCAAGGAGATTGGTCTGGAAGCTCGTGAGG TTTCCTTGTACGGAAATAAGAAGGCCAAGATTTCACTGTCAGTGTTGGAG CGTCTGAAGGACAAGGAGGTGGGTCACTATGTGGTTGTAGCCGGTATGAC ACCAACGCCTTTGGGTGAGGGTAAGACCACCACACTAATGGGCTTGGTCC AGGCTCTCGGCGCGCACAAGCTGAGAAACACCATGGCTGCTCTGCGACAG CCCTCCCAAGGTCCAACCTTTGGCATCAAAGGAGGAGCTGCTGGCGGCGG ATACGCCCAGGTGATTCCCATGGAGGAGTTCAATCTCCATCTGACAGGAG ACATTCATGCGGTATCGGCAGCCAATAACTTGCTGGCCGCCCAGCTGGAC ACCCGCATCTTCCACGAGAATACCCAAAAGGACAAGGCCTTGTATGACAG ATTGGTGCCCGCGATCAAGGGTCAGCGGAAATTCAGCCCCATTCAGCTAC GCCGGCTCCAGAAATTGGGAATCACCAAAACCGATCCCGATACCCTTACC GCTGACGAATACGGACCTTTTGCCCGGCTGGACATCGATCCGGACACGAT TATGTGGGAGCGTGTGGTGGACATCAACGATCGGTACCTACGCACCATTA CCGTTGGGCAATCGCCCACTGAAAAGGGTATTTCGAGGGAGACCCGGTTC TCCATCTCGGTGGCCAGCGAGATCATGGCTGTGCTAGCACTATCCCGAAG TCTGGAGGACATGAAGCAGCGGCTGGCTGACATGGTGGTGGCATTCGACA AACGAGGCAAGCCCGTAACCGCTGACGATTTGGGTGTCACCGGTGCCCTG GCAGTTCTTTTGAAGGACGCTCTCGAGCCGAACCTGATGCAGTCGCTCGA GGGAACTCCAGTGCTGGTGCACGCTGGTCCCTTTGCCAACATCGCCCACG GTTGCAACTCGATCATCGCTGATGAAGTCGGCCTAAAGCTGGTTGGTAAA AATGGATTTGTCTGCACGGAGGCCGGGTTCGGATCAGATATTGGCATGGA AAAGTTTTGCAACATTAAGTGTCGGACATCCGGTCGCAAGCCGAACGCCA TGGTGCTGGTAGCCACTGTGAGGGCCATCAAGATGCACGGCGGCGGAGCT CCCGTCACTCCCGGAGCCCCCTTGAACAAGCAGTACACCGAGGAGAACTT GGAGCTCGTCCAGAAGGGTCTGCCCAATCTGCTGCAGCACATCGAGAACG GAAAGGCCTTCGGCATGCCAGTGGTGGTGAGCCTTAATGCTCATTCAGCA GACACCCCGGCGGAGCATGAGTTGGTCAAAAAGGCTGCTCTGGAGGCAGG TGCATTCGCCGCCGTAGTCTCCACTCACTGGGCGGACGGAGGAGCCGGAG CCGTTCAGCTGGCCGATGCCGTGATCAAGGCCTGCGAACAGGGCAATCAA TTCCGATTGCTCTACGATCTGGAGCTGCCGCTGGTGGATAAGATGAACAA GATCGCTACGACGATGTACGGCGCTGGAAAGGTGGTGCTCTCGCCGGCGG CTGAGGAGAAGGTCAAACGCCTGACGGATGCGGGTTTTGGCAATCTACCT ATCTGCATGTCCAAAGTCTCCGGCTCCTTCACCGGCGATGCCAAAATCAA AGGCGCCCCCAAGGGCTTCACCCTGGACGTTGAGGACGTATATGTTTCAG CCGGAGCCGGCTTTGTGGTCGCCATGTGCGGTGAGGTCACCAAAATGCCG GGTCTTCCCACCCGCCCGGCGATCTACGATATCGATCTGAATACGGAAAC CGGAGAAATTGAGGGCCTATTTTAGACGGCAACCTGGACAAGGGAGAAGA TTCCTAATAACTTTCAACGCCTTTTCACATCTAATTCCAGAGTAGTAACA AATTTATCGTTTTAACTTGTATATAAATGATATAGAGATAAGATTTAAAA GTCGGTAAACTAATATACATTTCTGACGATTTGAGTTTTCTTTAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6526543..6528384 | 892..2733 | 8985 | 99.2 | Plus |
chr3R | 27901430 | chr3R | 6525761..6526234 | 421..894 | 2355 | 99.8 | Plus |
chr3R | 27901430 | chr3R | 6528449..6528860 | 2732..3143 | 2015 | 99.3 | Plus |
chr3R | 27901430 | chr3R | 6525429..6525639 | 212..422 | 1055 | 100 | Plus |
chr3R | 27901430 | chr3R | 6522208..6522346 | 1..139 | 695 | 100 | Plus |
chr3R | 27901430 | chr3R | 6525292..6525366 | 137..211 | 375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10700998..10702840 | 891..2733 | 9215 | 100 | Plus |
3R | 32079331 | 3R | 10700217..10700690 | 421..894 | 2370 | 100 | Plus |
3R | 32079331 | 3R | 10702905..10703320 | 2732..3147 | 2080 | 100 | Plus |
3R | 32079331 | 3R | 10699885..10700095 | 212..422 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 10696664..10696802 | 1..139 | 695 | 100 | Plus |
3R | 32079331 | 3R | 10699748..10699822 | 137..211 | 375 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 10441829..10443671 | 891..2733 | 9215 | 100 | Plus |
3R | 31820162 | 3R | 10441048..10441521 | 421..894 | 2370 | 100 | Plus |
3R | 31820162 | 3R | 10443736..10444151 | 2732..3147 | 2080 | 100 | Plus |
3R | 31820162 | 3R | 10440716..10440926 | 212..422 | 1055 | 100 | Plus |
3R | 31820162 | 3R | 10437495..10437633 | 1..139 | 695 | 100 | Plus |
3R | 31820162 | 3R | 10440579..10440653 | 137..211 | 375 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6522208..6522346 | 1..139 | 100 | -> | Plus |
chr3R | 6525295..6525366 | 140..211 | 100 | -> | Plus |
chr3R | 6525429..6525639 | 212..422 | 100 | -> | Plus |
chr3R | 6525763..6526234 | 423..894 | 99 | -> | Plus |
chr3R | 6526546..6528383 | 895..2732 | 99 | -> | Plus |
chr3R | 6528450..6528860 | 2733..3143 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RD | 1..2907 | 69..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RB | 1..2907 | 69..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RB | 1..2907 | 69..2975 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RD | 15..3130 | 1..3116 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RB | 147..3289 | 1..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
pug-RB | 131..3273 | 1..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10696664..10696802 | 1..139 | 100 | -> | Plus |
3R | 10699751..10699822 | 140..211 | 100 | -> | Plus |
3R | 10699885..10700095 | 212..422 | 100 | -> | Plus |
3R | 10700219..10700690 | 423..894 | 100 | -> | Plus |
3R | 10701002..10702839 | 895..2732 | 100 | -> | Plus |
3R | 10702906..10703316 | 2733..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10696664..10696802 | 1..139 | 100 | -> | Plus |
3R | 10699751..10699822 | 140..211 | 100 | -> | Plus |
3R | 10699885..10700095 | 212..422 | 100 | -> | Plus |
3R | 10700219..10700690 | 423..894 | 100 | -> | Plus |
3R | 10701002..10702839 | 895..2732 | 100 | -> | Plus |
3R | 10702906..10703316 | 2733..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10696664..10696802 | 1..139 | 100 | -> | Plus |
3R | 10699751..10699822 | 140..211 | 100 | -> | Plus |
3R | 10699885..10700095 | 212..422 | 100 | -> | Plus |
3R | 10700219..10700690 | 423..894 | 100 | -> | Plus |
3R | 10701002..10702839 | 895..2732 | 100 | -> | Plus |
3R | 10702906..10703316 | 2733..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6525473..6525544 | 140..211 | 100 | -> | Plus |
arm_3R | 6525607..6525817 | 212..422 | 100 | -> | Plus |
arm_3R | 6522386..6522524 | 1..139 | 100 | -> | Plus |
arm_3R | 6525941..6526412 | 423..894 | 100 | -> | Plus |
arm_3R | 6526724..6528561 | 895..2732 | 100 | -> | Plus |
arm_3R | 6528628..6529038 | 2733..3143 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10440716..10440926 | 212..422 | 100 | -> | Plus |
3R | 10441050..10441521 | 423..894 | 100 | -> | Plus |
3R | 10441833..10443670 | 895..2732 | 100 | -> | Plus |
3R | 10443737..10444147 | 2733..3143 | 100 | Plus | |
3R | 10437495..10437633 | 1..139 | 100 | -> | Plus |
3R | 10440582..10440653 | 140..211 | 100 | -> | Plus |
Translation from 68 to 2974
> LD23514.pep MSAQYQRFLKVLEKWPAEKSKVGSGEWTAEPAIKMSGAKIISGTAVAKSI REELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGID AAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITD AVSPEKDVDGLHTVNEGRLAIGDLGGFLPCTPWGCLELIRRSGVEIAGAR AVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIG VAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGH LTPVPGGVGPMTVAMLMKNTVRSAARFLERLAKSQWALQTLPLKPQRPVP SDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKE VGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPT FGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHE NTQKDKALYDRLVPAIKGQRKFSPIQLRRLQKLGITKTDPDTLTADEYGP FARLDIDPDTIMWERVVDINDRYLRTITVGQSPTEKGISRETRFSISVAS EIMAVLALSRSLEDMKQRLADMVVAFDKRGKPVTADDLGVTGALAVLLKD ALEPNLMQSLEGTPVLVHAGPFANIAHGCNSIIADEVGLKLVGKNGFVCT EAGFGSDIGMEKFCNIKCRTSGRKPNAMVLVATVRAIKMHGGGAPVTPGA PLNKQYTEENLELVQKGLPNLLQHIENGKAFGMPVVVSLNAHSADTPAEH ELVKKAALEAGAFAAVVSTHWADGGAGAVQLADAVIKACEQGNQFRLLYD LELPLVDKMNKIATTMYGAGKVVLSPAAEEKVKRLTDAGFGNLPICMSKV SGSFTGDAKIKGAPKGFTLDVEDVYVSAGAGFVVAMCGEVTKMPGLPTRP AIYDIDLNTETGEIEGLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17545-PA | 931 | GF17545-PA | 1..931 | 35..968 | 4360 | 90.1 | Plus |
Dana\GF18431-PA | 306 | GF18431-PA | 2..295 | 38..326 | 560 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17628-PA | 968 | GG17628-PA | 1..968 | 1..968 | 5011 | 97.8 | Plus |
Dere\GG17397-PA | 303 | GG17397-PA | 2..298 | 38..329 | 551 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14901-PA | 934 | GH14901-PA | 3..934 | 38..968 | 3913 | 79.7 | Plus |
Dgri\GH18238-PA | 303 | GH18238-PA | 2..300 | 38..333 | 542 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pug-PD | 968 | CG4067-PD | 1..968 | 1..968 | 4926 | 100 | Plus |
pug-PB | 968 | CG4067-PB | 1..968 | 1..968 | 4926 | 100 | Plus |
pug-PE | 965 | CG4067-PE | 21..965 | 24..968 | 4804 | 99.9 | Plus |
pug-PC | 934 | CG4067-PC | 1..934 | 35..968 | 4747 | 100 | Plus |
pug-PA | 934 | CG4067-PA | 1..934 | 35..968 | 4747 | 100 | Plus |
Nmdmc-PC | 303 | CG18466-PC | 2..295 | 38..326 | 551 | 45.3 | Plus |
Nmdmc-PA | 303 | CG18466-PA | 2..295 | 38..326 | 551 | 45.3 | Plus |
Nmdmc-PB | 309 | CG18466-PB | 8..301 | 38..326 | 551 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23694-PA | 935 | GI23694-PA | 5..935 | 38..968 | 3983 | 83.7 | Plus |
Dmoj\GI10194-PA | 301 | GI10194-PA | 2..294 | 38..326 | 549 | 43.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11980-PA | 970 | GL11980-PA | 1..970 | 1..968 | 4461 | 88 | Plus |
Dper\GL12491-PA | 307 | GL12491-PA | 2..290 | 38..321 | 554 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13173-PA | 970 | GA13173-PA | 1..970 | 1..968 | 4455 | 87.9 | Plus |
Dpse\GA14943-PA | 307 | GA14943-PA | 2..290 | 38..321 | 554 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23891-PA | 968 | GM23891-PA | 1..968 | 1..968 | 5068 | 99 | Plus |
Dsec\GM26287-PA | 303 | GM26287-PA | 2..298 | 38..329 | 551 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18702-PA | 968 | GD18702-PA | 1..968 | 1..968 | 5057 | 98.8 | Plus |
Dsim\GD20823-PA | 303 | GD20823-PA | 2..298 | 38..329 | 553 | 44.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23253-PA | 935 | GJ23253-PA | 5..935 | 38..968 | 4028 | 83.8 | Plus |
Dvir\GJ23482-PA | 301 | GJ23482-PA | 2..294 | 38..326 | 547 | 43.6 | Plus |
Translation from 68 to 2974
> LD23514.hyp MSAQYQRFLKVLEKWPAEKSKVGSGEWTAEPAIKMSGAKIISGTAVAKSI REELRNEVTAMSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGID AAHVQLPRSITEVELLDKINDLNEDPRVHGIIVQMPLDCDTPIDSHRITD AVSPEKDVDGLHTVNEGRLAIGDLGGFLPCTPWGCLELIRRSGVEIAGAR AVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEITRSADILVVGIG VAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAGH LTPVPGGVGPMTVAMLMKNTVRSAARFLERLAKSQWALQTLPLKPQRPVP SDIVIARAQKPKDIAVLAKEIGLEAREVSLYGNKKAKISLSVLERLKDKE VGHYVVVAGMTPTPLGEGKTTTLMGLVQALGAHKLRNTMAALRQPSQGPT FGIKGGAAGGGYAQVIPMEEFNLHLTGDIHAVSAANNLLAAQLDTRIFHE NTQKDKALYDRLVPAIKGQRKFSPIQLRRLQKLGITKTDPDTLTADEYGP FARLDIDPDTIMWERVVDINDRYLRTITVGQSPTEKGISRETRFSISVAS EIMAVLALSRSLEDMKQRLADMVVAFDKRGKPVTADDLGVTGALAVLLKD ALEPNLMQSLEGTPVLVHAGPFANIAHGCNSIIADEVGLKLVGKNGFVCT EAGFGSDIGMEKFCNIKCRTSGRKPNAMVLVATVRAIKMHGGGAPVTPGA PLNKQYTEENLELVQKGLPNLLQHIENGKAFGMPVVVSLNAHSADTPAEH ELVKKAALEAGAFAAVVSTHWADGGAGAVQLADAVIKACEQGNQFRLLYD LELPLVDKMNKIATTMYGAGKVVLSPAAEEKVKRLTDAGFGNLPICMSKV SGSFTGDAKIKGAPKGFTLDVEDVYVSAGAGFVVAMCGEVTKMPGLPTRP AIYDIDLNTETGEIEGLF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pug-PD | 968 | CG4067-PD | 1..968 | 1..968 | 4926 | 100 | Plus |
pug-PB | 968 | CG4067-PB | 1..968 | 1..968 | 4926 | 100 | Plus |
pug-PE | 965 | CG4067-PE | 21..965 | 24..968 | 4804 | 99.9 | Plus |
pug-PC | 934 | CG4067-PC | 1..934 | 35..968 | 4747 | 100 | Plus |
pug-PA | 934 | CG4067-PA | 1..934 | 35..968 | 4747 | 100 | Plus |