Clone LD23523 Report

Search the DGRC for LD23523

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:23
Vector:pOT2
Associated Gene/TranscriptCG7200-RA
Protein status:LD23523.pep: gold
Preliminary Size:1300
Sequenced Size:1492

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7200 2001-01-01 Release 2 assignment
CG7200 2001-07-04 Blastp of sequenced clone
CG7200 2003-01-01 Sim4 clustering to Release 3
CG7200 2008-04-29 Release 5.5 accounting
CG7200 2008-08-15 Release 5.9 accounting
CG7200 2008-12-18 5.12 accounting

Clone Sequence Records

LD23523.complete Sequence

1492 bp (1492 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051684

> LD23523.complete
CAAATATCGTTTTGGAATTTTTTACAAGGAACTCAAAAAGGAACAGCCAG
TGCATGATTAGGAATTTGAGCGCCTCAAAGACCCACAGCCAGATCGAATG
GCGTCCGAAGAGCGGGATGGGGATGTCCTGCTCCAGTTGCATCCCGAGGA
AGTCGTGGAAACTGACCCACAGCTGCCCGAGGAAATCGAGCGCTGTTCTG
GACTAGATTATAACGATTTTTTCTGGCGCTACATGCACAAGAACATACCG
GTCATCATAGCCAATGTGTCTAACGACTGGGAGTGCCAGAACTGGACTGT
AGGCCAGTCCAGTCCAGAGTCGCGGGATCTCAACTCCAATCCGAGTGCAT
CTTCCATCAACTTTGACTACCTCAAAACCAAGATCAGCGATGGCCCGGTT
CCAGTTGCCAATTGCAATTCGTCGTACTTCAATAGTCACACCAAACTGGA
GCTCAACTTCCACGACTACCTGGCCAAGTGGAGGAGTAGCATCGAAAGTC
AATCGTCAGCAGCGTGGACGTCGGCGGAAGTGAATAGTAATGTGGCTCCC
GCGAGCGGGGACAATCTCTACCTCAAGGACTGGCATCTGGCTGCCCAAAT
GCCGGGCTATAACTTCTACAAGGTGCCTAAATACTTTGCCTCCGACTGGC
TCAACGAACAACTGATTCAGCAGGGGAAAGACGACTATCGATTCGTCTAT
ATGGGGCCCAAGAACTCATGGACCTCCTATCATGCGGACGTGTTTGGCTC
CTTCAGTTGGTCCACCAATATAGTGGGCCTTAAGAAATGGCTGATAATGC
CGCCGGGAGAAGAACTCAAACTCAACGATCGCTTGGGAAACCTGCCCTTT
AGTATAGACGAGAAAATGCTGGATGAGCACAACGTGCGATATTACACCAT
TAATCAGCGGGCCAATGAAGCTGTTTTCGTGCCCAGTGGCTGGTTTCATC
AGGTGTGGAACCTAACAGACACCATATCCGTCAATCACAACTGGTTCAAT
GGCTGCAACATATCCATGGTCTGGCAAAACCTTAAGAACAACCTGAAGGC
CGTTTGCAATGAGATCTCCGACTGCCAGCAGATGGACAACTTTGAGGCCC
ACTGCCAGACAATGCTGAGGGCCAGCTTTGGTATCAACTACCTCGATTTT
ATAGAACTACTGGAGTTTATAGCCGCTCGCCGATTGGCAGAGGGAACCGT
AGCCACCAAATTTTTACTATTCGATAGTTACACAATGAACGATTATCATG
TGCAATACGATCTCGAGTGCTTATGGAAGATCACCCGGACTCTAACAGAG
GATCCGACTATCCAGTGTAGTCCCCTCCAATTAGAAGATCGCTGCCAGGG
ATTGCTCGCTCGTTTAGAGTTTTAGAATAAGCACAGCTCAAATGCCTCGG
CATATTTTTATACCAATACTTGTATTCATATACAACCGAAAGTCGTAATA
TTTTAATACAGACATTTAAACACCAAAAAAAAAAAAAAAAAA

LD23523.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7200-RA 1652 CG7200-RA 100..1575 1..1476 7380 100 Plus
CG5783-RA 1017 CG5783-RA 963..1017 1476..1422 275 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:22:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18155758..18156512 1474..720 3775 100 Minus
chr2L 23010047 chr2L 18156565..18157285 721..1 3605 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:22:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18157108..18157864 1476..720 3785 100 Minus
2L 23513712 2L 18157917..18158637 721..1 3605 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18157108..18157864 1476..720 3785 100 Minus
2L 23513712 2L 18157917..18158637 721..1 3605 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:22:56 has no hits.

LD23523.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:23:58 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18155758..18156511 721..1474 100 <- Minus
chr2L 18156566..18157285 1..720 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:11 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 1..1278 98..1375 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:11 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 1..1278 98..1375 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 1..1278 98..1375 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:50 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 1..1278 98..1375 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:22 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 1..1278 98..1375 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:23 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 40..1513 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:11 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 50..1523 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:43 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 44..1517 1..1474 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:50 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 40..1513 1..1474 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:22 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
CG7200-RA 44..1517 1..1474 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:58 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18157110..18157863 721..1474 100 <- Minus
2L 18157918..18158637 1..720 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:58 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18157110..18157863 721..1474 100 <- Minus
2L 18157918..18158637 1..720 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:58 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18157110..18157863 721..1474 100 <- Minus
2L 18157918..18158637 1..720 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:43 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18157110..18157863 721..1474 100 <- Minus
arm_2L 18157918..18158637 1..720 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:32 Download gff for LD23523.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18157110..18157863 721..1474 100 <- Minus
2L 18157918..18158637 1..720 100   Minus

LD23523.pep Sequence

Translation from 97 to 1374

> LD23523.pep
MASEERDGDVLLQLHPEEVVETDPQLPEEIERCSGLDYNDFFWRYMHKNI
PVIIANVSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGP
VPVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVA
PASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQGKDDYRFV
YMGPKNSWTSYHADVFGSFSWSTNIVGLKKWLIMPPGEELKLNDRLGNLP
FSIDEKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWF
NGCNISMVWQNLKNNLKAVCNEISDCQQMDNFEAHCQTMLRASFGINYLD
FIELLEFIAARRLAEGTVATKFLLFDSYTMNDYHVQYDLECLWKITRTLT
EDPTIQCSPLQLEDRCQGLLARLEF*

LD23523.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14855-PA 425 GF14855-PA 1..425 1..425 1627 72 Plus
Dana\GF16939-PA 407 GF16939-PA 155..305 174..311 192 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21717-PA 424 GG21717-PA 1..424 1..425 2117 93 Plus
Dere\GG12525-PA 405 GG12525-PA 155..305 174..311 199 34 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10542-PA 434 GH10542-PA 1..430 1..423 1404 62.8 Plus
Dgri\GH19722-PA 410 GH19722-PA 155..305 174..311 200 34 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
JMJD4-PB 425 CG7200-PB 1..425 1..425 2319 100 Plus
JMJD4-PA 425 CG7200-PA 1..425 1..425 2319 100 Plus
PSR-PA 408 CG5383-PA 155..303 174..309 204 34.4 Plus
PSR-PB 441 CG5383-PB 155..303 174..309 204 34.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20889-PA 417 GI20889-PA 1..417 1..424 1419 63.6 Plus
Dmoj\GI22281-PA 402 GI22281-PA 155..305 174..311 200 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19437-PA 429 GL19437-PA 1..427 1..423 1554 67.3 Plus
Dper\GL24169-PA 402 GL24169-PA 155..305 174..311 190 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20176-PA 429 GA20176-PA 1..427 1..423 1549 67.1 Plus
Dpse\GA18839-PA 402 GA18839-PA 155..305 174..311 190 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17099-PA 425 GM17099-PA 1..425 1..425 2208 96.5 Plus
Dsec\GM23660-PA 408 GM23660-PA 155..305 174..311 200 34 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21842-PA 425 GD21842-PA 1..425 1..425 2234 97.6 Plus
Dsim\GD18469-PA 408 GD18469-PA 155..305 174..311 200 34 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19851-PA 442 GJ19851-PA 1..428 1..419 1392 61.2 Plus
Dvir\GJ24074-PA 405 GJ24074-PA 155..305 174..311 199 34 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14582-PA 423 GK14582-PA 1..423 1..423 1386 65.3 Plus
Dwil\GK14253-PA 400 GK14253-PA 155..305 174..311 189 32.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12742-PA 428 GE12742-PA 1..428 1..425 2100 91.6 Plus
Dyak\GE24049-PA 410 GE24049-PA 155..305 174..311 198 34 Plus

LD23523.hyp Sequence

Translation from 97 to 1374

> LD23523.hyp
MASEERDGDVLLQLHPEEVVETDPQLPEEIERCSGLDYNDFFWRYMHKNI
PVIIANVSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGP
VPVANCNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVA
PASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQGKDDYRFV
YMGPKNSWTSYHADVFGSFSWSTNIVGLKKWLIMPPGEELKLNDRLGNLP
FSIDEKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWF
NGCNISMVWQNLKNNLKAVCNEISDCQQMDNFEAHCQTMLRASFGINYLD
FIELLEFIAARRLAEGTVATKFLLFDSYTMNDYHVQYDLECLWKITRTLT
EDPTIQCSPLQLEDRCQGLLARLEF*

LD23523.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7200-PB 425 CG7200-PB 1..425 1..425 2319 100 Plus
CG7200-PA 425 CG7200-PA 1..425 1..425 2319 100 Plus
PSR-PA 408 CG5383-PA 155..303 174..309 204 34.4 Plus
PSR-PB 441 CG5383-PB 155..303 174..309 204 34.4 Plus