Clone LD23532 Report

Search the DGRC for LD23532

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:32
Vector:pOT2
Associated Gene/TranscriptCG16817-RA
Protein status:LD23532.pep: gold
Preliminary Size:1085
Sequenced Size:806

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG16817 2001-01-01 Release 2 assignment
CG16817 2001-10-10 Blastp of sequenced clone
CG16817 2003-01-01 Sim4 clustering to Release 3
CG16817 2008-04-29 Release 5.5 accounting
CG16817 2008-08-15 Release 5.9 accounting
CG16817 2008-12-18 5.12 accounting

Clone Sequence Records

LD23532.complete Sequence

806 bp (806 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061317

> LD23532.complete
TCAATTTTGTGCATGACAATTTTGTTCAACAGAAACTGCCTTTTTTTGTA
ACCAAGTCAGGCTGTCAGTCAGAAGTGTTCCGACTTCGTAAAACATAAAC
CAACAATTCACAGCAACAACATAATGTCGGCAGCAGCAGGCTTGATTCCG
CCTCCAGTTTCCTGGGCCCAGCGCAATGACTTGATCTACGTCATCATCGA
TGTCGAATGCAAGGACATCGAACACAAAGTTACGGAAAAAACCTTCACCT
TCAAGGGCGTAAACGTGCTGGATCCGTCGAAGAAGTACGAGGTCACACTG
AACTTCCTCCACGAGGTGGATCCCGAGAAGGTGACCAGCAAGAACATTGG
CCGCTGCCTGGAATTCACAATACCCAAGAAGGCGGCCGGTCCCTACTGGT
CCTCGCTGACCACGGACAAGACCAAGTTGCATTTCCTAAAAGCCAACTTT
GCCAAGTGGCGCGATGAGTCCGACGACGAGGAGGGTGACCAAAAAGACAA
CAGCATGTTTGGAAATTTCCTTAACAGCCCTGGTGGCGATTGGAACAACA
AGTTCGACGATTTCAACGTCGATGACGAGGAGGAGGACTCGGATGACAAC
ATCCCAAGTCTGTCCCAGAACGACGAGGATGACGAGGAGGGCGGCGAGGG
TGATAAGGAGAAGAAGCCAGCTGCCTAGACGGTCGCTCAGATGGTGTCTC
GCAATTTGGCGTAGTCGTAGCGTTAGGCGTGGCTCTTATACCATAAGTCA
GCACACGATCACAACACTCACTCCTCACATACACACCAAAAAAAAAAAAA
AAAAAA

LD23532.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-RA 1189 CG16817-RA 84..889 1..806 3970 99.5 Plus
CG16817.c 1233 CG16817.c 351..933 224..806 2840 99.1 Plus
CG16817.a 1161 CG16817.a 286..864 228..806 2835 99.3 Plus
CG16817.c 1233 CG16817.c 57..283 1..227 1135 100 Plus
CG16817.a 1161 CG16817.a 43..269 1..227 1135 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5504871..5505174 484..787 1520 100 Plus
chr3R 27901430 chr3R 5504545..5504807 224..486 1300 99.6 Plus
chr3R 27901430 chr3R 5503776..5503915 1..140 700 100 Plus
chr3R 27901430 chr3R 5504390..5504477 140..227 440 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:24:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9679042..9679364 484..806 1555 98.8 Plus
3R 32079331 3R 9678716..9678978 224..486 1300 99.6 Plus
3R 32079331 3R 9677947..9678086 1..140 700 100 Plus
3R 32079331 3R 9678561..9678648 140..227 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9419873..9420195 484..806 1555 98.7 Plus
3R 31820162 3R 9419547..9419809 224..486 1300 99.6 Plus
3R 31820162 3R 9418778..9418917 1..140 700 100 Plus
3R 31820162 3R 9419392..9419479 140..227 440 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:25:00 has no hits.

LD23532.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:25:50 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5504872..5505174 485..787 100   Plus
chr3R 5503776..5503915 1..140 100 -> Plus
chr3R 5504391..5504477 141..227 100 -> Plus
chr3R 5504549..5504805 228..484 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:12 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 124..678 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:35:59 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 124..678 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:02:45 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 124..678 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:04:52 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 124..678 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:02:02 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 1..555 124..678 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:16:04 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 17..803 1..787 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:35:58 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 43..829 1..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:02:45 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 21..807 1..787 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:04:52 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 17..803 1..787 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:02:02 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
CG16817-RA 21..807 1..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:50 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9677947..9678086 1..140 100 -> Plus
3R 9678562..9678648 141..227 100 -> Plus
3R 9678720..9678976 228..484 100 -> Plus
3R 9679043..9679345 485..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:50 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9677947..9678086 1..140 100 -> Plus
3R 9678562..9678648 141..227 100 -> Plus
3R 9678720..9678976 228..484 100 -> Plus
3R 9679043..9679345 485..787 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:25:50 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9677947..9678086 1..140 100 -> Plus
3R 9678562..9678648 141..227 100 -> Plus
3R 9678720..9678976 228..484 100 -> Plus
3R 9679043..9679345 485..787 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:02:45 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5504284..5504370 141..227 100 -> Plus
arm_3R 5503669..5503808 1..140 100 -> Plus
arm_3R 5504442..5504698 228..484 100 -> Plus
arm_3R 5504765..5505067 485..787 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:40:41 Download gff for LD23532.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9419551..9419807 228..484 100 -> Plus
3R 9419874..9420176 485..787 100   Plus
3R 9418778..9418917 1..140 100 -> Plus
3R 9419393..9419479 141..227 100 -> Plus

LD23532.pep Sequence

Translation from 123 to 677

> LD23532.pep
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAA*

LD23532.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23063-PA 182 GF23063-PA 2..182 3..184 801 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:33:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17015-PA 184 GG17015-PA 1..184 1..184 937 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19405-PA 182 GH19405-PA 1..182 1..184 649 82.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:57
Subject Length Description Subject Range Query Range Score Percent Strand
p23-PB 184 CG16817-PB 1..184 1..184 993 100 Plus
p23-PA 184 CG16817-PA 1..184 1..184 993 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:33:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22609-PA 185 GI22609-PA 4..168 1..166 678 83.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12369-PA 183 GL12369-PA 1..183 1..184 747 87.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14165-PA 183 GA14165-PA 1..183 1..184 747 87.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:33:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23826-PA 184 GM23826-PA 1..184 1..184 948 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18637-PA 195 GD18637-PA 18..195 7..184 923 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23854-PA 181 GJ23854-PA 2..181 3..184 682 85.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11119-PA 186 GK11119-PA 2..186 3..184 675 77.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25973-PA 184 GE25973-PA 1..184 1..184 934 96.7 Plus

LD23532.hyp Sequence

Translation from 123 to 677

> LD23532.hyp
MSAAAGLIPPPVSWAQRNDLIYVIIDVECKDIEHKVTEKTFTFKGVNVLD
PSKKYEVTLNFLHEVDPEKVTSKNIGRCLEFTIPKKAAGPYWSSLTTDKT
KLHFLKANFAKWRDESDDEEGDQKDNSMFGNFLNSPGGDWNNKFDDFNVD
DEEEDSDDNIPSLSQNDEDDEEGGEGDKEKKPAA*

LD23532.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG16817-PB 184 CG16817-PB 1..184 1..184 993 100 Plus
CG16817-PA 184 CG16817-PA 1..184 1..184 993 100 Plus