Clone LD23562 Report

Search the DGRC for LD23562

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:62
Vector:pOT2
Associated Gene/TranscriptCG11417-RA
Protein status:LD23562.pep: gold
Preliminary Size:2719
Sequenced Size:2440

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11417 2002-06-12 Blastp of sequenced clone
CG11417 2003-01-01 Sim4 clustering to Release 3
CG11417 2008-04-29 Release 5.5 accounting
CG11417 2008-08-15 Release 5.9 accounting
CG11417 2008-12-18 5.12 accounting

Clone Sequence Records

LD23562.complete Sequence

2440 bp (2440 high quality bases) assembled on 2002-06-12

GenBank Submission: AY122162

> LD23562.complete
ACGTGCTTACGTTTTGTTTGTATTTTACTGGGCTCCTCGGGAAATGGGCA
AGAAGAAGGACAAGTCCGGGAAGCTGGACAAGCAGACGACGAAGAAGGAG
GCACCGAGCTCGTCGCAGGCCAACATGGGGAAGGCAGCTGGAGCCAATGA
TTCGGAGAACGGAATTTGGCAGGACTCTCGGTTCCAGCACCTGCTGACCG
ATCCCCGATTTCGCGGCGTTCCAAAAGTGCAGCGAAAGGTCAAGATCGAC
AAGCGTTTCCAGGGCATGTTCACGGACGACAAGTTCAAGGTGAAGTACAC
CGTGGACAAGTACGGCCGCCCGGTCAACAAGAGCAACGCCGAGGACCTCA
GAAAGTTCTACGAACTGGACGAGAACGAGAGCAGCAGCGGCGAGGAGCCT
GCCAAAAAGGAATCCGATCTTGACTCCGAGGCGGAGGCAGAGCAACAAGA
GCGGCGCGCCGAGGAGCGAGCCATAGCCAACTTGGAGAAGGAGGAGAGCA
ACGATACTCTGGAAAGCGATAGTTCCGAGGTGTCACAGAGTCTTCGTCAG
CGCCTGACCAACCCAGAGATAGACTACGCCCGCGGAGAAGGCCGCCTGTA
TACCGACTCCTCCTCAGACGAGGACAGCGATGATGAGGACGAGGGTCCAG
AACTGCAGATAGACCACGTGTGGGGCGAACTGGACAACGATGCCGAGCAC
ACCGAGGAGAGCACCCGCCGGCTGGCTGTTTGCAACATGGACTGGGACCG
CATCCGGGCCGAGGATCTAATGGTCATGCTCAGCTCCTTCCTGCCGCCCG
GCGGTAGCATTCTCAGCGTCAAGATATACCCCTCAGAGTTCGGGAAAGCG
CGCATGGCCGAGGAGGAAGTGCACGGCCCAAAGGAACTGGTGGAGCGCGT
GGAGCCAGAAGACGACTCCGATGAGGAGCTCGTACGCCAGCAGGACAGCG
ATGCCGAAGAGGGGGAGGACTACCACATGGAGAAGCTGCGTCAGTACCAG
CTAAACCGACTTCGCTACTACTATGCTGTTGTCGAGTGCGACAGCATAGA
CACGGCCGACAAGGTATACAAGGAGTGCGATGGTATCGAGTACGAGAGCT
CCGCCACGCGCGTGGACTTGCGCTTCATCCCGGACGACACCTCGTTCGAG
GAGGACACGCCGTCGGACGAATGCTTCGAGCTGCCGGATGCCAGCAGCTA
TAAGCCGCGACAGTTCACCACCACGGCGTTGCAGCAGGCCAAGGTGGATC
TAACCTGGGACGAGACGGCGCTGGACCGTCGTGAGCTGGGTGACAAGCTC
TCCAGCGGGCAGGTTGACAAGCTCACGGACAAGGAGCTGCGCCAGATAGT
AGCGTACAGTAGTGAGGAAGAGGATTCTGAGGCAGAGGAATCCCCGGCGG
AGGAGGCTGCTCAAAAGGCGGTTTCAGAGGACCCACAGAAGAGCAAGCCC
AAAAAGACTTCTAAGCAGGAACGCATTGCCACCTACAAAAACTTGCTGGC
CGACATCCTGGAGCAGGAAAAGAAGGAGAAGGAGCAGAAGTACGAAATGG
AAATGACCTGGAACGTGGAGCCCCAGCACGAAGAGGCACAGCCGGAGCAG
CAAGCCCAGGCCGAGCTCACGCCCATCGAGAAGGTGATCCAGAAACGCAG
CGAGAAGAACAGGCAGCGCAAGGAACAGCGCCGCCAGCGCCAGATCGAAG
CCAGAGGAGGCGATGCCGGTGAGGACAGCGATGAGTCCATGGTGCCCGAT
GGCATCGATTTGAATGACGCCTATTTCGCCGAGGAGTTCGCTAATGGAGA
CTACGCTCCCCCTAAAACGAAGCAGGACAAGAAGAAAAAGAAAAAGAAGG
GAAAGGACGATGGAGAGGAGGACGTCGAGGCGAAGCGGCAAGAGAAGGAG
CTTGAGCTACTGCTGGACGATGGCGACGGGCGCGACGAGAAGCAACACTT
CAGTCTGACCAAAATCCTCAAGAAGGAGGAGCAAGAAGCGAGCGGTTCAA
AGCGAAAGCGTCGTCAGAAGTTAAAGAAATCGAAAAATCAGCCGCAGAAT
GCGGAGAAGCTGGACGACGACTTCCAGGTAAACCTGAATGATAATCGCTT
CAGTGCCGTTTACAAGTCGCACGAGTACAACATCGATCCCACCCACTCCC
ATTACAAGCCCACCAAGGGCATGCAGCAGATCATCGGCGAGAAGTTAAAG
CGCAGAAAGGAGCAGGGGGAGGGCGGCGCTGCAAACGGCGATGCGGATGG
GGATGAGCAGGTAGCCCCCAAGAGGAGTAAGCAGCAGCTGGAGCAGAACG
CCCTGGTAAAGAGTCTGAAGCGTAAGATCCAGCTGCAGCAGCAGGGCCAG
AAGCTTTAGAGGATTAATGTTACTGTACAATAGGTGAACAAATGTAAATT
AAAGACTACGTTAATGACATTGAAAAAAAAAAAAAAAAAA

LD23562.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11417-RA 2438 CG11417-RA 10..2432 1..2423 12100 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1247985..1250406 1..2422 12095 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1354052..1356474 1..2423 12100 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1362150..1364572 1..2423 12100 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 16:35:12 has no hits.

LD23562.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:36:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1247985..1249802 1..1818 99 == Plus
chrX 1249885..1250406 1901..2422 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:20 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 1..2316 44..2359 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:23:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 1..2316 44..2359 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:49 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 1..2316 44..2359 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:13:43 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 1..2316 44..2359 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:34:33 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 1..2316 44..2359 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:49:56 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 10..2431 1..2422 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:23:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 10..2431 1..2422 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:49 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 39..2460 1..2422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:13:43 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 10..2431 1..2422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:34:33 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
CG11417-RA 39..2460 1..2422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
X 1354052..1356473 1..2422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
X 1354052..1356473 1..2422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:36:00 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
X 1354052..1356473 1..2422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:49 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1248085..1250506 1..2422 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:46:34 Download gff for LD23562.complete
Subject Subject Range Query Range Percent Splice Strand
X 1362150..1364571 1..2422 99   Plus

LD23562.hyp Sequence

Translation from 0 to 2358

> LD23562.hyp
RAYVLFVFYWAPREMGKKKDKSGKLDKQTTKKEAPSSSQANMGKAAGAND
SENGIWQDSRFQHLLTDPRFRGVPKVQRKVKIDKRFQGMFTDDKFKVKYT
VDKYGRPVNKSNAEDLRKFYELDENESSSGEEPAKKESDLDSEAEAEQQE
RRAEERAIANLEKEESNDTLESDSSEVSQSLRQRLTNPEIDYARGEGRLY
TDSSSDEDSDDEDEGPELQIDHVWGELDNDAEHTEESTRRLAVCNMDWDR
IRAEDLMVMLSSFLPPGGSILSVKIYPSEFGKARMAEEEVHGPKELVERV
EPEDDSDEELVRQQDSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSID
TADKVYKECDGIEYESSATRVDLRFIPDDTSFEEDTPSDECFELPDASSY
KPRQFTTTALQQAKVDLTWDETALDRRELGDKLSSGQVDKLTDKELRQIV
AYSSEEEDSEAEESPAEEAAQKAVSEDPQKSKPKKTSKQERIATYKNLLA
DILEQEKKEKEQKYEMEMTWNVEPQHEEAQPEQQAQAELTPIEKVIQKRS
EKNRQRKEQRRQRQIEARGGDAGEDSDESMVPDGIDLNDAYFAEEFANGD
YAPPKTKQDKKKKKKKGKDDGEEDVEAKRQEKELELLLDDGDGRDEKQHF
SLTKILKKEEQEASGSKRKRRQKLKKSKNQPQNAEKLDDDFQVNLNDNRF
SAVYKSHEYNIDPTHSHYKPTKGMQQIIGEKLKRRKEQGEGGAANGDADG
DEQVAPKRSKQQLEQNALVKSLKRKIQLQQQGQKL*

LD23562.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG11417-PA 771 CG11417-PA 1..771 15..785 3974 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 3643..4362 14..784 208 19.6 Plus
Strn-Mlck-PV 7944 CG44162-PV 3682..4401 14..784 208 19.6 Plus
Strn-Mlck-PS 8216 CG44162-PS 3643..4362 14..784 208 19.6 Plus
Strn-Mlck-PU 8255 CG44162-PU 3682..4401 14..784 208 19.6 Plus
Strn-Mlck-PT 7905 CG44162-PT 4314..5012 28..784 187 19 Plus
Strn-Mlck-PV 7944 CG44162-PV 4353..5051 28..784 187 19 Plus
Strn-Mlck-PS 8216 CG44162-PS 4314..5012 28..784 187 19 Plus
Strn-Mlck-PT 7905 CG44162-PT 4174..4817 122..784 175 19.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 4213..4856 122..784 175 19.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 4174..4817 122..784 175 19.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3452..4037 162..784 174 18.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 3491..4076 162..784 174 18.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 3452..4037 162..784 174 18.5 Plus
Strn-Mlck-PT 7905 CG44162-PT 4564..5152 122..713 164 19.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 4603..5191 122..713 164 19.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 4564..5152 122..713 164 19.1 Plus

LD23562.pep Sequence

Translation from 43 to 2358

> LD23562.pep
MGKKKDKSGKLDKQTTKKEAPSSSQANMGKAAGANDSENGIWQDSRFQHL
LTDPRFRGVPKVQRKVKIDKRFQGMFTDDKFKVKYTVDKYGRPVNKSNAE
DLRKFYELDENESSSGEEPAKKESDLDSEAEAEQQERRAEERAIANLEKE
ESNDTLESDSSEVSQSLRQRLTNPEIDYARGEGRLYTDSSSDEDSDDEDE
GPELQIDHVWGELDNDAEHTEESTRRLAVCNMDWDRIRAEDLMVMLSSFL
PPGGSILSVKIYPSEFGKARMAEEEVHGPKELVERVEPEDDSDEELVRQQ
DSDAEEGEDYHMEKLRQYQLNRLRYYYAVVECDSIDTADKVYKECDGIEY
ESSATRVDLRFIPDDTSFEEDTPSDECFELPDASSYKPRQFTTTALQQAK
VDLTWDETALDRRELGDKLSSGQVDKLTDKELRQIVAYSSEEEDSEAEES
PAEEAAQKAVSEDPQKSKPKKTSKQERIATYKNLLADILEQEKKEKEQKY
EMEMTWNVEPQHEEAQPEQQAQAELTPIEKVIQKRSEKNRQRKEQRRQRQ
IEARGGDAGEDSDESMVPDGIDLNDAYFAEEFANGDYAPPKTKQDKKKKK
KKGKDDGEEDVEAKRQEKELELLLDDGDGRDEKQHFSLTKILKKEEQEAS
GSKRKRRQKLKKSKNQPQNAEKLDDDFQVNLNDNRFSAVYKSHEYNIDPT
HSHYKPTKGMQQIIGEKLKRRKEQGEGGAANGDADGDEQVAPKRSKQQLE
QNALVKSLKRKIQLQQQGQKL*

LD23562.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:11:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21010-PA 780 GF21010-PA 35..778 36..767 2481 74.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:11:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12845-PA 776 GG12845-PA 1..776 1..771 3313 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12825-PA 774 GH12825-PA 1..770 1..763 2303 64.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:59:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11417-PA 771 CG11417-PA 1..771 1..771 3974 100 Plus
Strn-Mlck-PT 7905 CG44162-PT 3714..4362 107..770 207 18.9 Plus
Strn-Mlck-PV 7944 CG44162-PV 3753..4401 107..770 207 18.9 Plus
Strn-Mlck-PS 8216 CG44162-PS 3714..4362 107..770 207 18.9 Plus
Strn-Mlck-PU 8255 CG44162-PU 3753..4401 107..770 207 18.9 Plus
Strn-Mlck-PT 7905 CG44162-PT 4314..5012 14..770 187 19 Plus
Strn-Mlck-PV 7944 CG44162-PV 4353..5051 14..770 187 19 Plus
Strn-Mlck-PS 8216 CG44162-PS 4314..5012 14..770 187 19 Plus
Strn-Mlck-PU 8255 CG44162-PU 4353..5051 14..770 187 19 Plus
Strn-Mlck-PT 7905 CG44162-PT 4174..4817 108..770 175 19.4 Plus
Strn-Mlck-PV 7944 CG44162-PV 4213..4856 108..770 175 19.4 Plus
Strn-Mlck-PS 8216 CG44162-PS 4174..4817 108..770 175 19.4 Plus
Strn-Mlck-PU 8255 CG44162-PU 4213..4856 108..770 175 19.4 Plus
Strn-Mlck-PT 7905 CG44162-PT 3452..4037 148..770 174 18.5 Plus
Strn-Mlck-PV 7944 CG44162-PV 3491..4076 148..770 174 18.5 Plus
Strn-Mlck-PS 8216 CG44162-PS 3452..4037 148..770 174 18.5 Plus
Strn-Mlck-PU 8255 CG44162-PU 3491..4076 148..770 174 18.5 Plus
CG2839-PA 826 CG2839-PA 381..695 441..770 168 18.1 Plus
Strn-Mlck-PT 7905 CG44162-PT 4564..5152 108..699 164 19.1 Plus
Strn-Mlck-PV 7944 CG44162-PV 4603..5191 108..699 164 19.1 Plus
Strn-Mlck-PS 8216 CG44162-PS 4564..5152 108..699 164 19.1 Plus
Strn-Mlck-PU 8255 CG44162-PU 4603..5191 108..699 164 19.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14979-PA 776 GI14979-PA 1..765 1..758 2195 63.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14244-PA 441 GL14244-PA 1..287 1..279 904 67.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22714-PA 783 GA22714-PA 1..780 1..765 2556 71.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19129-PA 945 GM19129-PA 643..945 464..771 1151 90.6 Plus
Dsec\GM19129-PA 945 GM19129-PA 1..221 1..221 1002 92.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16551-PA 139 GD16551-PA 1..139 633..771 614 92.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15340-PA 773 GJ15340-PA 1..769 1..763 2403 66.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16237-PA 789 GK16237-PA 24..784 18..763 2195 66.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16680-PA 776 GE16680-PA 1..776 1..771 3310 92.8 Plus