Clone LD23569 Report

Search the DGRC for LD23569

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:69
Vector:pOT2
Associated Gene/TranscriptCG4091-RA
Protein status:LD23569.pep: gold
Preliminary Size:1956
Sequenced Size:1821

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4091 2001-01-01 Release 2 assignment
CG4091 2002-04-04 Blastp of sequenced clone
CG4091 2003-01-01 Sim4 clustering to Release 3
CG4091 2008-04-29 Release 5.5 accounting
CG4091 2008-08-15 Release 5.9 accounting
CG4091 2008-12-18 5.12 accounting

Clone Sequence Records

LD23569.complete Sequence

1821 bp (1821 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095033

> LD23569.complete
GTTTAATCGAAGTTGCGCATAAATTTAGCTGCAAATTGTACGCAGTTCGC
GGGCTTTAATGCAGCCAACCCCTTTCAGTTGCTTTCGCTAGCACTTCGAT
TTGCGGACACTGGTCATCAAGCACACATTACACCCATACACACACATACT
TGGACTCAAGGACTCAAGGATTCGATTCAAGGACTGCAGCAACAACAAAA
ACAAAAACAGTCATGGCGGACAATGTCTTCAAGTCGCACGATATCGGGCT
GCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATCGCCA
AGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTACAGG
CTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGATCAA
GAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAACAATC
AGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAAGTTT
CAAAACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCACGTT
CGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCGCTGA
AGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCATCGAC
GAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTTTCCG
ACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGACATAA
ACGCAGCCATGGAAACGGGAGATATCTGAGGAGATTCGCAAAGCGAGCTG
AGCTGCAATTGCGTGCTATGAACGAAAGGCTATATATCGAAACCAAAAAG
CAGCCAGTAGCTAGTTGCGAATGGAAAACGCTTGCTTAAAGCTCACCCAC
CAACACCACCACCACCACCATCACCACCAAAATACAAAATCTAGGTATAA
ATATGGGCCAGCAGCGGCAGAGATGAAGCAGAGCTGGGAAAGAATGGAAA
AAAGACATGGGTTTAAGGAGAAGTTTAATTTAGTTCAACTAGTGATATAA
CATTGACAACAATATCAAAAGTGTAAAGACGTCCGTATTGATTATTTTGA
TGACAACGTTAACATTCGTGTACTCAAGGTCTATGTAGTAATAATTAGGA
AGAACCAAATGCATTTCGCCAAAGGAATTCACTAAACGGAAATTGTAAAC
TCGAGCAAAATGCTTTTATCGGTGTGTAAGTTGATCGTTGATCGTACGTG
TGAAAGTAACTATATGTACAATAGTTTTAAGTGTTAGATGGAAAATACTT
CGGCACATAAGCAATTACTTATTCGTGGTCTACTTTTTGATACTCCCAAA
CTCGCTGTGTGCACCCGCAAGTAACTATATCAACGTCTTAGTCAGACCTT
TGCGTACTTAACCGATCGCCGCCGATCGGAGCCACCCATCTCACCTGCAG
TCGTTAGTCGATGCTAAGTTGGTTATGCTAAGTCGTCACCAGAACCTGTT
TCTATTTCTATTCGTATTTGTATTCGTATTCGTATTCGTATTCCAAGCCT
CCAAGGGGTCGGTAACCTTAAGCATTATTTATGATACTCCCACAATGATA
TTCCAACTACCCGAAACATATCGAAACTATCTGAAAGGCAACATAGCTAA
GGGGACAATAAGTTGTTTGCATTTTTCTATGACTTTTGGTTCGATATTCC
AGCGATGGAGGCACAAGTTTAGTGGTTTAGATTTTAAATATTTATTTGTT
TACCAACAAAACTATGTTGACTATAAAAATAAAAGCAACAATTACCAAAA
AAAAAAAAAAAAAAAAAAAAA

LD23569.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-RA 1929 CG4091-RA 100..1900 1..1801 9005 100 Plus
CG4091-RC 1992 CG4091-RC 371..1963 209..1801 7965 100 Plus
CG4091-RB 1784 CG4091-RB 163..1755 209..1801 7965 100 Plus
CG4091-RC 1992 CG4091-RC 94..305 1..212 1060 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 19585114..19586412 1796..497 6405 99.7 Minus
chr2R 21145070 chr2R 19586463..19586757 503..209 1445 99.3 Minus
chr2R 21145070 chr2R 19588278..19588480 203..1 985 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23698943..23700247 1801..497 6495 99.8 Minus
2R 25286936 2R 23700298..23700592 503..209 1475 100 Minus
2R 25286936 2R 23702111..23702320 210..1 1050 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 23700142..23701446 1801..497 6495 99.8 Minus
2R 25260384 2R 23701497..23701791 503..209 1475 100 Minus
2R 25260384 2R 23703310..23703519 210..1 1050 100 Minus
Blast to na_te.dros performed 2019-03-16 20:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 560..630 1791..1722 128 68.5 Minus

LD23569.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:24:04 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 19585114..19586405 504..1796 94 <- Minus
chr2R 19586463..19586755 211..503 99 <- Minus
chr2R 19588277..19588480 1..210 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:21 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 209..779 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:17:45 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 209..779 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:51 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 209..779 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:57:53 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 209..779 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:33 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 209..779 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:17 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 82..1877 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:17:45 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 82..1877 1..1796 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:51 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 87..1881 1..1795 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:57:53 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 82..1877 1..1796 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:33 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 87..1881 1..1795 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:04 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23698948..23700240 504..1796 100 <- Minus
2R 23700298..23700590 211..503 100 <- Minus
2R 23702111..23702320 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:04 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23698948..23700240 504..1796 100 <- Minus
2R 23700298..23700590 211..503 100 <- Minus
2R 23702111..23702320 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:04 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23698948..23700240 504..1796 100 <- Minus
2R 23700298..23700590 211..503 100 <- Minus
2R 23702111..23702320 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:51 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19586471..19587763 504..1796 100 <- Minus
arm_2R 19587821..19588113 211..503 100 <- Minus
arm_2R 19589634..19589843 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:25 Download gff for LD23569.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23701515..23701807 211..503 100 <- Minus
2R 23700165..23701457 504..1796 100 <- Minus
2R 23703328..23703537 1..210 100   Minus

LD23569.pep Sequence

Translation from 212 to 778

> LD23569.pep
MADNVFKSHDIGLRAQKKILSRMATKNIAKTFIDGTTASLLDNLYRLCKM
HTGNKAKAEKLIKNIIKIVIKIGVLHRNNQFSDEELQKAELFKRKFQNTQ
LSIISFYEVDFTFDLPYLQKSIAESQVALKSIVQPHLTEKSLGRIDEVFD
FFGEEALLETAFRPDSPYREVMGKIVADINAAMETGDI*

LD23569.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11827-PA 210 GF11827-PA 23..210 1..188 873 95.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20007-PA 210 GG20007-PA 23..210 1..188 985 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21553-PA 211 GH21553-PA 24..211 1..188 795 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
sigmar-PB 188 CG4091-PB 1..188 1..188 942 100 Plus
sigmar-PA 188 CG4091-PA 1..188 1..188 942 100 Plus
sigmar-PC 210 CG4091-PC 23..210 1..188 942 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19525-PA 211 GI19525-PA 24..211 1..188 811 88.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17592-PA 210 GL17592-PA 23..210 1..188 866 94.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17951-PA 210 GA17951-PA 23..210 1..188 866 94.1 Plus
Dpse\GA17951-PB 188 GA17951-PB 1..188 1..188 864 94.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15519-PA 210 GM15519-PA 23..210 1..188 958 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25023-PA 143 GD25023-PA 27..143 72..188 613 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21094-PA 211 GJ21094-PA 24..211 1..188 841 91.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23170-PA 210 GK23170-PA 23..210 1..188 833 91 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11543-PA 210 GE11543-PA 23..210 1..188 985 99.5 Plus

LD23569.hyp Sequence

Translation from 212 to 778

> LD23569.hyp
MADNVFKSHDIGLRAQKKILSRMATKNIAKTFIDGTTASLLDNLYRLCKM
HTGNKAKAEKLIKNIIKIVIKIGVLHRNNQFSDEELQKAELFKRKFQNTQ
LSIISFYEVDFTFDLPYLQKSIAESQVALKSIVQPHLTEKSLGRIDEVFD
FFGEEALLETAFRPDSPYREVMGKIVADINAAMETGDI*

LD23569.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-PB 188 CG4091-PB 1..188 1..188 942 100 Plus
CG4091-PA 188 CG4091-PA 1..188 1..188 942 100 Plus
CG4091-PC 210 CG4091-PC 23..210 1..188 942 100 Plus