Clone LD23573 Report

Search the DGRC for LD23573

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:235
Well:73
Vector:pOT2
Associated Gene/TranscriptCG33156-RB
Protein status:LD23573.pep: gold
Preliminary Size:1300
Sequenced Size:1870

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6152 2001-01-01 Release 2 assignment
CG33156 2003-01-01 Sim4 clustering to Release 3
CG33156 2003-02-24 Blastp of sequenced clone
CG33156 2008-04-29 Release 5.5 accounting
CG33156 2008-08-15 Release 5.9 accounting
CG33156 2008-12-18 5.12 accounting

Clone Sequence Records

LD23573.complete Sequence

1870 bp (1870 high quality bases) assembled on 2003-02-24

GenBank Submission: BT004874

> LD23573.complete
CTTCGCAGTCGCCATTTGCATAAGGTTGATTTACAGTTGAGAGAACTTAG
TCTGCATACTGCAAAGGTGGAGAAAACAAGCCAAATATTCTGAAAATCCT
GTTGAAATATTGAACAAATGTTTCCCCTGCGTCCTGATCAGCCGCAGGCG
GTTGCCTCGTTTCCGCTCCACAGCTCCTTGAGCATCGAAGAGTTCAACAA
TGTGAAGTGGGAGGATATAAATGATTGCAATAACAATTGCATTCGGGAGG
AGCCAATTCTAAGGCCCAAAACCAATCGCCATATTTTAAGGCGCACTCGC
AGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGGACCATGTGGTCGCAT
CATGAAAAACTCCGCCATGGTGATGCAGATCCAGGATCCGGCTAGTCAAC
GTCTCACCTGGTACAAGCCACCACTCACCGTGCTCGTGATCAAGAAGGTC
AGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCTGGTGGACTGGCTGCT
GCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGGCCGTGCTGGAGGATG
TCCAGCTCAACGAAAATGTGCGATTCAAGGCCATTCGGGATAAGCTAGTG
ACTTTCAAAGATGGCCGAGATGATCTGACCGATCGCATAGACTTTATAGT
TTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTTCGCTGCTCTTCCAGC
AATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGCTCCCTCGGCTTTCTC
ACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCTGACCAGCGTCCTGGA
GGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGCGCTGTGTTATGCATC
GCAGGAGCGATAGGAAACACGAGGCTAAGACTCTGGAGGCAGATCTAGAT
GGTGAGGCGCGACCTGCAGCCAACAGCATACTGGTGCTCAACGAAGTGGT
CATTGATCGTGGTCCATCGCCGTATCTGAGCAATATTGATCTGTTTCTGG
ACGGAAAGTATATCACGTCGGTGCAGGGCGACGGTCTGATCGTATCGACG
CCCACGGGAAGCACGGCATATGCGGCGGCGGCCGGTGCGTCCATGATCCA
TCCCTCCGTGCCGGCGATTATGGTGACTCCCATCTGCCCGCATTCGCTTA
GCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAGCTGAAGATATCAGTA
TCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTTCGATGGACGCAACAG
GCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGACCACCTCCATTTATC
CCGTGCCATGCATCTGCGCCCAGGATCAGATATCCGACTGGTTCGCCTCC
CTAGCCGACGGACTGCACTGGAATGTGCGCAAGCGACAGAAGTGCCTGGA
CGAGCTGTCGGATCTGACGGCATCCGGATCGGAGGATACGCTGGACGAGA
TCGAGAACATGAAATTGTACGATGTGTAGTGCGTAAGTCCCTGCAGCTAA
TAGAAACCGTAGGTTAGGGCTTTTAGTTGTAGTTCTAATGCTTTCGCCCT
TTGCTTAGTGTGTAATTTTTGTAGTATTTTCGGTAACAAATTGTTTAAAC
ACATTTGCCAAATGTATGGAAATCATTTTATAACTTTTACTGTTCGAAAC
GCCAGTGCTCTTGCAATATTGTACATTTCAGCTAGTTAAATATAAATGCA
GTTGCAAACTGTAGCAAAAAGTTGTAGAGAGCATTGAATGAATGAATCTC
AAATCTTTGAGAATTAACATTAAAAAGTCCCACTTCTAAAAAGATAAGCA
ATTGAATTATATATTACTTAATAAAATAATACCTGTAAATTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

LD23573.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:18:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RB 1854 CG33156-RB 13..1854 1..1842 9210 100 Plus
CG33156-RA 2024 CG33156-RA 380..1933 290..1843 7770 100 Plus
CG33156-RF 1795 CG33156-RF 242..1795 289..1842 7770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9435545..9436197 1842..1190 3265 100 Minus
chr2R 21145070 chr2R 9436255..9436837 1191..609 2915 100 Minus
chr2R 21145070 chr2R 9436900..9437219 608..289 1600 100 Minus
chr2R 21145070 chr2R 9437287..9437577 291..1 1455 100 Minus
chr2R 21145070 chr2R 9425499..9425769 1191..921 770 85.6 Minus
chr2R 21145070 chr2R 9426405..9426660 539..281 600 83 Minus
chr2R 21145070 chr2R 9425926..9426156 839..609 585 83.5 Minus
chr2R 21145070 chr2R 9425100..9425352 1442..1190 545 81 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548243..13548896 1843..1190 3270 100 Minus
2R 25286936 2R 13548954..13549536 1191..609 2915 100 Minus
2R 25286936 2R 13549599..13549918 608..289 1600 100 Minus
2R 25286936 2R 13549986..13550276 291..1 1455 100 Minus
2R 25286936 2R 13538198..13538468 1191..921 770 85.6 Minus
2R 25286936 2R 13539104..13539359 539..281 600 83 Minus
2R 25286936 2R 13538625..13538855 839..609 585 83.5 Minus
2R 25286936 2R 13537799..13538051 1442..1190 545 81 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13549442..13550095 1843..1190 3270 100 Minus
2R 25260384 2R 13550153..13550735 1191..609 2915 100 Minus
2R 25260384 2R 13550798..13551117 608..289 1600 100 Minus
2R 25260384 2R 13551185..13551475 291..1 1455 100 Minus
2R 25260384 2R 13539397..13539667 1191..921 770 85.6 Minus
2R 25260384 2R 13539824..13540054 839..609 585 83.5 Minus
2R 25260384 2R 13538998..13539250 1442..1190 545 81 Minus
2R 25260384 2R 13540392..13540558 447..281 505 86.8 Minus
2R 25260384 2R 13540303..13540380 539..462 210 84.6 Minus
Blast to na_te.dros performed on 2019-03-16 09:38:34 has no hits.

LD23573.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:39:35 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9436900..9437217 291..608 100 <- Minus
chr2R 9437288..9437577 1..290 100   Minus
chr2R 9435545..9436195 1192..1842 100 <- Minus
chr2R 9436255..9436837 609..1191 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:22 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 118..1479 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:48:27 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 118..1479 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:03:31 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 118..1479 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:39:50 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 118..1479 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:32 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1362 118..1479 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:00:46 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1841 2..1842 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:48:26 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1841 2..1842 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:03:31 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1824 19..1842 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:39:50 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1841 2..1842 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:32 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 1..1824 19..1842 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:35 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13549987..13550276 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:35 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13549987..13550276 1..290 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:39:35 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1192..1842 100 <- Minus
2R 13548954..13549536 609..1191 100 <- Minus
2R 13549599..13549916 291..608 100 <- Minus
2R 13549987..13550276 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:03:31 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9435749..9436399 1192..1842 100 <- Minus
arm_2R 9436459..9437041 609..1191 100 <- Minus
arm_2R 9437104..9437421 291..608 100 <- Minus
arm_2R 9437492..9437781 1..290 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:12 Download gff for LD23573.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13550798..13551115 291..608 100 <- Minus
2R 13551186..13551475 1..290 100   Minus
2R 13549443..13550093 1192..1842 100 <- Minus
2R 13550153..13550735 609..1191 100 <- Minus

LD23573.hyp Sequence

Translation from 117 to 1478

> LD23573.hyp
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDV*

LD23573.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 453 CG33156-PB 1..453 1..453 2358 100 Plus
CG33156-PF 450 CG33156-PF 11..450 10..453 2052 90.5 Plus
CG33156-PA 454 CG33156-PA 60..454 59..453 2041 100 Plus
CG33156-PE 490 CG33156-PE 96..490 59..453 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 79..453 1933 100 Plus

LD23573.pep Sequence

Translation from 117 to 1478

> LD23573.pep
MFPLRPDQPQAVASFPLHSSLSIEEFNNVKWEDINDCNNNCIREEPILRP
KTNRHILRRTRSLNAPSPVQQFGPCGRIMKNSAMVMQIQDPASQRLTWYK
PPLTVLVIKKVSDASVLAPFVYLVDWLLQEKNMVVWVESAVLEDVQLNEN
VRFKAIRDKLVTFKDGRDDLTDRIDFIVCLGGDGTLLYASLLFQQSVPPV
MAFHLGSLGFLTPFRFDNFEEQLTSVLEGHAALTLRSRLRCVMHRRSDRK
HEAKTLEADLDGEARPAANSILVLNEVVIDRGPSPYLSNIDLFLDGKYIT
SVQGDGLIVSTPTGSTAYAAAAGASMIHPSVPAIMVTPICPHSLSFRPIV
VPAGVELKISVSPESRNTSWVSFDGRNRQELFHGDSLRVTTSIYPVPCIC
AQDQISDWFASLADGLHWNVRKRQKCLDELSDLTASGSEDTLDEIENMKL
YDV*

LD23573.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11176-PA 543 GF11176-PA 96..543 6..453 2091 91.1 Plus
Dana\GF11178-PA 544 GF11178-PA 108..544 59..453 1584 74.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22480-PA 643 GG22480-PA 210..643 20..453 2286 97.9 Plus
Dere\GG22483-PA 549 GG22483-PA 110..549 59..453 1601 74.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22631-PA 442 GH22631-PA 49..442 59..453 1912 90.4 Plus
Dgri\GH22633-PA 564 GH22633-PA 123..563 59..452 1622 75 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PB 453 CG33156-PB 1..453 1..453 2358 100 Plus
CG33156-PF 450 CG33156-PF 11..450 10..453 2052 90.5 Plus
CG33156-PE 490 CG33156-PE 96..490 59..453 2041 100 Plus
CG33156-PA 454 CG33156-PA 60..454 59..453 2041 100 Plus
CG33156-PC 375 CG33156-PC 1..375 79..453 1933 100 Plus
CG6145-PF 484 CG6145-PF 33..483 47..452 1623 73.2 Plus
CG6145-PE 483 CG6145-PE 43..482 58..452 1622 74.4 Plus
CG6145-PC 548 CG6145-PC 109..547 59..452 1617 74.3 Plus
CG6145-PA 520 CG6145-PA 81..519 59..452 1617 74.3 Plus
CG6145-PB 420 CG6145-PB 1..419 79..452 1519 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21327-PA 412 GI21327-PA 8..412 59..453 1856 87.3 Plus
Dmoj\GI21329-PA 560 GI21329-PA 119..560 59..453 1629 75.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17065-PA 546 GL17065-PA 121..546 22..453 1918 88.2 Plus
Dper\GL17067-PA 557 GL17067-PA 109..550 59..453 1618 74.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17329-PA 605 GA17329-PA 155..605 1..453 2072 89.4 Plus
Dpse\GA24350-PA 557 GA24350-PA 109..550 59..453 1619 74.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20268-PA 523 GM20268-PA 90..523 20..453 2298 99.3 Plus
Dsec\GM20270-PA 548 GM20270-PA 109..548 59..453 1600 74.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25753-PA 519 GD25753-PA 80..518 59..452 1596 75 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19672-PA 448 GJ19672-PA 38..448 42..453 1919 87.9 Plus
Dvir\GJ19674-PA 557 GJ19674-PA 117..556 59..452 1611 74.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15608-PA 475 GK15608-PA 57..474 35..452 1911 87.4 Plus
Dwil\GK15610-PA 569 GK15610-PA 123..569 59..453 1609 74.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13352-PA 454 GE13352-PA 60..454 59..453 2077 99 Plus
Dyak\GE13354-PA 522 GE13354-PA 83..522 59..453 1599 74.8 Plus