BDGP Sequence Production Resources |
Search the DGRC for LD23604
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 236 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | CG6540-RA |
Protein status: | LD23604.pep: gold |
Preliminary Size: | 1300 |
Sequenced Size: | 1211 |
Gene | Date | Evidence |
---|---|---|
CG6540 | 2001-01-01 | Release 2 assignment |
CG6540 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6540 | 2003-01-15 | Blastp of sequenced clone |
CG6540 | 2008-04-29 | Release 5.5 accounting |
CG6540 | 2008-08-15 | Release 5.9 accounting |
CG6540 | 2008-12-18 | 5.12 accounting |
1211 bp (1211 high quality bases) assembled on 2003-01-15
GenBank Submission: AY061318
> LD23604.complete TCCTTGTTAATGCAACGCTTTTTCGTTTTTCGCCGTTATAATTATTATAA TTAATATTCGCATTCGATATGGAGCCAATGAATCTGGGCAGCCCGGTCAA CAGTCCTGGCTCCAACCAGACCCAGTATCTGCCACCTTTTCTGCTCGGCG ATCCGCAAGGTATAACGCCGCACAAGAACACGCTGTCCCCGAAAACCGGG CGCTCTAATATAAGTTTCGCCACCTCGCCCGGCGGCAGCAGTCCGCACGA GCTCAACCGCTCCGCTCTGAGCACACGCACTCTGTTCGCCGCCCAAGGAG GCGCCCACACGGCTGTGGGCGCCAACAGCTCAACGACCGCGCACGGCCAG ACGCACAGCCACCACCAGACGGGACCGCCCACCCAGGGACTCTTCGACTC GCTGCGCGAACAGTCCGTCACCCCGAAGAAGAAGAACCATCTTGGCATGC TGCAGTTGCAGTCACCGAACCAGAGCTACCAGAGCAGCTATCACACGAAT GACTCGTTCGCACCCGGGGCGCCCAATGCCATCAATGCCTCGATGCGAGC ACTGTGCTCGCCACTTGGAGCCACTGCCTCGCCAGCTGGAGGCCTGGGCA CATCCGTGACGACGGGCGGCAACTCGCGCCTATCCGACTTTTGGGTTACC ATCTTCGGGTTCCCGCCGGGGGCCGGCTCCATGGTGCTGCAGCACTTCAC CGTCTGCGGCACCATTGTGGACGTGGTGCATGCCCCGCAGAACGGCAACT GGATGTATGTGCGCTACTCCTCGCGCATCGAGAGCGACAAGGCGCTGAAC TACAACGAAAAAATCATCGCCGGCAATGTGATGGTGGGCGTGTCGCGCTG CACGGATAGGTCGGTGATCGATAAGGAGAACATCGGCTCTGTGCCCAATG CAGAGATAGGAGATCCCCCCACCAGCCCCAGTGCGATTCGACCGTTTTCC CAGCAGTCGTACAAGCTGGCCCGCAAAGATAACATCATATCGCCGCAGAA GGATGTGCCGCAAAAGAGCTCCGGTCTGATGGACAAGGCCATGGACCTGA TATTCGGCTGGTAAGAAGGGCTGATGGCAAGTCGGATGGATGGATAGATG GAGTGATGGAGTTTCCGGCTACTTATTTAATAATTCACTGCCTACATCCA GCATACATACATATACATACTTATTAAATGGAGATATATTAGCAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 74..137 | 7..70 | 122 | 65.6 | Plus |
Dvir\Paris | 1730 | Dvir\Paris TV1 1730bp Derived from Z49253. | 1594..1657 | 70..7 | 122 | 65.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 18537683..18538656 | 220..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 1..996 | 69..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 1..996 | 69..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 1..996 | 69..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 1..996 | 69..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 1..996 | 69..1064 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 52..1244 | 1..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 52..1244 | 1..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 57..1249 | 1..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 52..1244 | 1..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6540-RA | 57..1249 | 1..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18648238..18648456 | 1..219 | 100 | -> | Plus |
X | 18648516..18649489 | 220..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18648238..18648456 | 1..219 | 100 | -> | Plus |
X | 18648516..18649489 | 220..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18648238..18648456 | 1..219 | 100 | -> | Plus |
X | 18648516..18649489 | 220..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 18542271..18542489 | 1..219 | 100 | -> | Plus |
arm_X | 18542549..18543522 | 220..1193 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 18656336..18656554 | 1..219 | 100 | -> | Plus |
X | 18656614..18657587 | 220..1193 | 100 | Plus |
Translation from 68 to 1063
> LD23604.hyp MEPMNLGSPVNSPGSNQTQYLPPFLLGDPQGITPHKNTLSPKTGRSNISF ATSPGGSSPHELNRSALSTRTLFAAQGGAHTAVGANSSTTAHGQTHSHHQ TGPPTQGLFDSLREQSVTPKKKNHLGMLQLQSPNQSYQSSYHTNDSFAPG APNAINASMRALCSPLGATASPAGGLGTSVTTGGNSRLSDFWVTIFGFPP GAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKII AGNVMVGVSRCTDRSVIDKENIGSVPNAEIGDPPTSPSAIRPFSQQSYKL ARKDNIISPQKDVPQKSSGLMDKAMDLIFGW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6540-PA | 331 | CG6540-PA | 1..331 | 1..331 | 1746 | 100 | Plus |
Translation from 68 to 1063
> LD23604.pep MEPMNLGSPVNSPGSNQTQYLPPFLLGDPQGITPHKNTLSPKTGRSNISF ATSPGGSSPHELNRSALSTRTLFAAQGGAHTAVGANSSTTAHGQTHSHHQ TGPPTQGLFDSLREQSVTPKKKNHLGMLQLQSPNQSYQSSYHTNDSFAPG APNAINASMRALCSPLGATASPAGGLGTSVTTGGNSRLSDFWVTIFGFPP GAGSMVLQHFTVCGTIVDVVHAPQNGNWMYVRYSSRIESDKALNYNEKII AGNVMVGVSRCTDRSVIDKENIGSVPNAEIGDPPTSPSAIRPFSQQSYKL ARKDNIISPQKDVPQKSSGLMDKAMDLIFGW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22540-PA | 341 | GF22540-PA | 1..341 | 1..331 | 1124 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19177-PA | 330 | GG19177-PA | 1..330 | 1..331 | 1407 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11910-PA | 340 | GH11910-PA | 1..340 | 1..331 | 908 | 54 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Nup35-PA | 331 | CG6540-PA | 1..331 | 1..331 | 1746 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15516-PA | 336 | GI15516-PA | 1..336 | 1..331 | 996 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26988-PA | 330 | GL26988-PA | 1..330 | 1..331 | 946 | 59.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19671-PA | 330 | GA19671-PA | 1..330 | 1..331 | 933 | 58.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22908-PA | 336 | GM22908-PA | 1..336 | 1..331 | 1584 | 88.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24856-PA | 336 | GD24856-PA | 1..336 | 1..331 | 1547 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ19275-PA | 331 | GJ19275-PA | 1..331 | 1..331 | 995 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24952-PA | 362 | GK24952-PA | 1..362 | 1..331 | 914 | 56.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17741-PA | 338 | GE17741-PA | 1..338 | 1..331 | 1452 | 80.5 | Plus |