Clone LD23605 Report

Search the DGRC for LD23605

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:5
Vector:pOT2
Associated Gene/TranscriptCG3534-RA
Protein status:LD23605.pep: gold
Preliminary Size:4600
Sequenced Size:1871

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3534 2001-01-01 Release 2 assignment
CG3534 2001-09-19 Blastp of sequenced clone
CG3534 2003-01-01 Sim4 clustering to Release 3
CG3534 2008-04-29 Release 5.5 accounting
CG3534 2008-08-15 Release 5.9 accounting
CG3534 2008-12-18 5.12 accounting

Clone Sequence Records

LD23605.complete Sequence

1871 bp (1871 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058530

> LD23605.complete
GAAGCAGTTTGAACATGGGTCCGCCAAAGCAGCTGAAACGAACCTTTCTT
GGCTTCGACTTGAGCACGCAAAAGCTCAAAGCCGTCCTGCTGGGCTCCAG
TTTGGAGGTGGTTGCCGCGGCTGAAGTGAAATTCGACACCGACTTGCCGG
AGTTCCGGACCACCGGTGGAGCCAACGCTGGATCCATCAAAAATGAATAC
TTTGTACAACCAGTGATGTGGGTGAAGGCCATGGACATTGTCCTGGACCG
ACTGGTTATGCAGCAAGCGGATCTTAGCACCGTAGCTGCCATCAGTGGCT
CCGGACAGCAGCACGGATCGCTCTACTGGTCCAAACATGGAATCAACACG
CTGCAAAACCTCGATTCCGAGAAGTTCCTTCACGCACAAATCGACGACTC
CGCCTTTGTGGTAAATCGTACTCCGATTTGGATGGACGCCACCACCACCA
AACAGTGCCTAGAGATGGAGATGGCTGTTGGTGGCAAACTTAACATGGTG
GAACTGACGGGCTCGAAGTGCTACGAACGTTTTACGGGTCCCCAAATTAG
AAAGATATATCAGCAACGCTGCCACGCCTACGAAGAGGCCAACCGAATCT
CATTGGTCAGCAGTTTTATATCATCGCTATTTCTGGGCTCCGTCGCTCCA
ATTGACTTCAGTGATGGTTCCGGCATGAATCTGCTGGACATCCGCAAGAA
GAACTGGTCCAAAGAATGCCTAAATGTTTGTGCACCCGATTTGGACAAGC
GCCTGGACATTCCGGTCAGTCCAAATTCGATTTTAGGCAACGTCTCTCCG
TACTTTGTGGAGCGCTTTAGTTTTTCGCCCGATTGCAAAGTGGCTGCTAG
CACGGGGGACAATCCTTCGGCGCTGTCTGGAATGTTGGTGGGCAGCAGCT
GGCTTACCATTTCCATGGGCACAAGTGACACCCTAATGATGAGCTTGAAG
GAGCCGCTAAACTGGGAGGAGGGTCATATACTCTGCCATCCAACTGAAAC
GGAAGAATTCATGGGCCTTCTATGTTTTAGAAATGCTTCATTGGTCCGTG
AGGAAATGAACAAGAAGACAACCGGCGGCGATTGGGATAAATTCAATGAG
TATCTCGACTCCACGCCCCGTGGAAACTTTGGGAACATGGCCGTGCACTT
TAACGACATGGAAATCATTCCCAAGGCGCAGGGTATTCTGCGATGGAACA
GGGAAATGGATCCCAGTTCCCCGGACGCGGCTAGGGGTGTAATCAAATTC
AGCTCGCCCCAAATCGAAATTCGAGCCCTAGTTGAAGGTCAGATGCTGCA
TCACCGGGCTGTGGCTGAAGACCTTGGCTACAAATTCGGACCCGAGACAC
AAATCCTTGTCACAGGAGGCGCATCTGTTAACAAATCAATCCTGCAAACA
ATTGCCGATGTGTTCAATGCTCCCGTCCATATCCAGGATGAAGGATTTGA
GGCTGCCCTACTGGGAGCCGCTTATCGATCCGCCTACGCTCTGTACCTTC
AAGAGGCAGGTGATGGGGTGACGCCTCTCTGTTACCGAGATTATATCCTA
AGTCTGACAAGTAACAAACTGAGCCTTGTATGCGAACCACACAAGGACAG
CGAGGAAATCTACGCTCCAATGCTACAACGATATCGCGAAATGGCGCGCG
TCCTGTCCAATCCTAACACATAAACTCTCCGAAAGCCCAACGTAACATTC
CAGTTTATACTCCGTACATTCACAAACTGATTCCTTCTTAAACGTCTCCT
GTAATTGACAGAACTTAAGTGCAATTAACAAATTCTGTGATTGACGATTT
ATTACAAATTTATGCGAAACCATATACAAATAAATTTTTATATATGGCCC
AAAAAAAAAAAAAAAAAAAAA

LD23605.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-RA 2072 CG3534-RA 199..2049 1..1851 9255 100 Plus
CG16941-RA 2707 CG16941-RA 2636..2707 1851..1780 360 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12821951..12822778 197..1024 4140 100 Plus
chr3R 27901430 chr3R 12823519..12823935 1434..1850 2085 100 Plus
chr3R 27901430 chr3R 12822836..12823058 1024..1246 1115 100 Plus
chr3R 27901430 chr3R 12823273..12823463 1247..1437 940 99.5 Plus
chr3R 27901430 chr3R 12821537..12821660 73..196 620 100 Plus
chr3R 27901430 chr3R 12821061..12821134 1..74 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16997465..16998292 197..1024 4140 100 Plus
3R 32079331 3R 16999033..16999450 1434..1851 2090 100 Plus
3R 32079331 3R 16998350..16998572 1024..1246 1115 100 Plus
3R 32079331 3R 16998787..16998977 1247..1437 955 100 Plus
3R 32079331 3R 16997051..16997174 73..196 620 100 Plus
3R 32079331 3R 16996575..16996648 1..74 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16738296..16739123 197..1024 4140 100 Plus
3R 31820162 3R 16739864..16740281 1434..1851 2090 100 Plus
3R 31820162 3R 16739181..16739403 1024..1246 1115 100 Plus
3R 31820162 3R 16739618..16739808 1247..1437 955 100 Plus
3R 31820162 3R 16737882..16738005 73..196 620 100 Plus
3R 31820162 3R 16737406..16737479 1..74 370 100 Plus
Blast to na_te.dros performed 2019-03-16 19:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 111..169 1844..1787 121 71.7 Minus

LD23605.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:29:58 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12821539..12821660 75..196 100 -> Plus
chr3R 12821061..12821134 1..74 100 -> Plus
chr3R 12821951..12822778 197..1024 100 -> Plus
chr3R 12822837..12823058 1025..1246 100 -> Plus
chr3R 12823273..12823462 1247..1436 99 -> Plus
chr3R 12823522..12823935 1437..1850 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:27 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 15..1673 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:03:39 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 15..1673 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:48 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 15..1673 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:34:15 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 15..1673 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:41 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 1..1659 15..1673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:52:22 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 124..1973 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:03:39 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 124..1973 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:48 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 130..1979 1..1850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:34:15 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 124..1973 1..1850 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:41 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
CG3534-RA 130..1979 1..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:58 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16996575..16996648 1..74 100 -> Plus
3R 16997053..16997174 75..196 100 -> Plus
3R 16997465..16998292 197..1024 100 -> Plus
3R 16998351..16998572 1025..1246 100 -> Plus
3R 16998787..16998976 1247..1436 100 -> Plus
3R 16999036..16999449 1437..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:58 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16996575..16996648 1..74 100 -> Plus
3R 16997053..16997174 75..196 100 -> Plus
3R 16997465..16998292 197..1024 100 -> Plus
3R 16998351..16998572 1025..1246 100 -> Plus
3R 16998787..16998976 1247..1436 100 -> Plus
3R 16999036..16999449 1437..1850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:29:58 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16996575..16996648 1..74 100 -> Plus
3R 16997053..16997174 75..196 100 -> Plus
3R 16997465..16998292 197..1024 100 -> Plus
3R 16998351..16998572 1025..1246 100 -> Plus
3R 16998787..16998976 1247..1436 100 -> Plus
3R 16999036..16999449 1437..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:48 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12822297..12822370 1..74 100 -> Plus
arm_3R 12822775..12822896 75..196 100 -> Plus
arm_3R 12823187..12824014 197..1024 100 -> Plus
arm_3R 12824073..12824294 1025..1246 100 -> Plus
arm_3R 12824509..12824698 1247..1436 100 -> Plus
arm_3R 12824758..12825171 1437..1850 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:11:07 Download gff for LD23605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16737406..16737479 1..74 100 -> Plus
3R 16737884..16738005 75..196 100 -> Plus
3R 16739182..16739403 1025..1246 100 -> Plus
3R 16739618..16739807 1247..1436 100 -> Plus
3R 16738296..16739123 197..1024 100 -> Plus
3R 16739867..16740280 1437..1850 100   Plus

LD23605.hyp Sequence

Translation from 2 to 1672

> LD23605.hyp
SSLNMGPPKQLKRTFLGFDLSTQKLKAVLLGSSLEVVAAAEVKFDTDLPE
FRTTGGANAGSIKNEYFVQPVMWVKAMDIVLDRLVMQQADLSTVAAISGS
GQQHGSLYWSKHGINTLQNLDSEKFLHAQIDDSAFVVNRTPIWMDATTTK
QCLEMEMAVGGKLNMVELTGSKCYERFTGPQIRKIYQQRCHAYEEANRIS
LVSSFISSLFLGSVAPIDFSDGSGMNLLDIRKKNWSKECLNVCAPDLDKR
LDIPVSPNSILGNVSPYFVERFSFSPDCKVAASTGDNPSALSGMLVGSSW
LTISMGTSDTLMMSLKEPLNWEEGHILCHPTETEEFMGLLCFRNASLVRE
EMNKKTTGGDWDKFNEYLDSTPRGNFGNMAVHFNDMEIIPKAQGILRWNR
EMDPSSPDAARGVIKFSSPQIEIRALVEGQMLHHRAVAEDLGYKFGPETQ
ILVTGGASVNKSILQTIADVFNAPVHIQDEGFEAALLGAAYRSAYALYLQ
EAGDGVTPLCYRDYILSLTSNKLSLVCEPHKDSEEIYAPMLQRYREMARV
LSNPNT*

LD23605.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 552 CG3534-PA 1..552 5..556 2876 100 Plus
CG3544-PB 572 CG3544-PB 13..564 14..556 1335 45.7 Plus
CG3544-PA 572 CG3544-PA 13..564 14..556 1335 45.7 Plus

LD23605.pep Sequence

Translation from 14 to 1672

> LD23605.pep
MGPPKQLKRTFLGFDLSTQKLKAVLLGSSLEVVAAAEVKFDTDLPEFRTT
GGANAGSIKNEYFVQPVMWVKAMDIVLDRLVMQQADLSTVAAISGSGQQH
GSLYWSKHGINTLQNLDSEKFLHAQIDDSAFVVNRTPIWMDATTTKQCLE
MEMAVGGKLNMVELTGSKCYERFTGPQIRKIYQQRCHAYEEANRISLVSS
FISSLFLGSVAPIDFSDGSGMNLLDIRKKNWSKECLNVCAPDLDKRLDIP
VSPNSILGNVSPYFVERFSFSPDCKVAASTGDNPSALSGMLVGSSWLTIS
MGTSDTLMMSLKEPLNWEEGHILCHPTETEEFMGLLCFRNASLVREEMNK
KTTGGDWDKFNEYLDSTPRGNFGNMAVHFNDMEIIPKAQGILRWNREMDP
SSPDAARGVIKFSSPQIEIRALVEGQMLHHRAVAEDLGYKFGPETQILVT
GGASVNKSILQTIADVFNAPVHIQDEGFEAALLGAAYRSAYALYLQEAGD
GVTPLCYRDYILSLTSNKLSLVCEPHKDSEEIYAPMLQRYREMARVLSNP
NT*

LD23605.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17074-PA 549 GF17074-PA 3..538 4..548 2311 77.4 Plus
Dana\GF15035-PA 569 GF15035-PA 27..559 24..549 1249 43.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:45:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21873-PA 552 GG21873-PA 1..552 1..552 2848 94.4 Plus
Dere\GG24744-PA 571 GG24744-PA 13..560 10..548 1382 46.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19552-PA 550 GH19552-PA 12..547 11..547 2166 75.2 Plus
Dgri\GH25221-PA 458 GH25221-PA 1..454 21..474 1932 76.4 Plus
Dgri\GH11241-PA 568 GH11241-PA 13..563 10..552 1101 39.5 Plus
Dgri\GH23245-PA 479 GH23245-PA 13..315 10..313 621 39.5 Plus
Dgri\GH23245-PA 479 GH23245-PA 337..476 422..552 242 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3534-PA 552 CG3534-PA 1..552 1..552 2876 100 Plus
CG3544-PB 572 CG3544-PB 13..564 10..552 1335 45.7 Plus
CG3544-PA 572 CG3544-PA 13..564 10..552 1335 45.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23848-PA 553 GI23848-PA 9..547 8..547 2160 75.2 Plus
Dmoj\GI21838-PA 580 GI21838-PA 5..560 2..548 1022 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24542-PA 550 GL24542-PA 1..547 1..549 2334 77 Plus
Dper\GL15293-PA 574 GL15293-PA 15..561 10..548 1215 44 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17507-PA 550 GA17507-PA 1..547 1..549 2329 76.9 Plus
Dpse\GA17513-PA 574 GA17513-PA 15..561 10..548 1241 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15194-PA 552 GM15194-PA 1..552 1..552 2911 97.5 Plus
Dsec\GM16766-PA 572 GM16766-PA 13..564 10..552 1368 44.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19126-PA 405 GD19126-PA 1..397 1..397 2101 97.7 Plus
Dsim\GD23045-PA 572 GD23045-PA 13..564 10..552 1378 45.3 Plus
Dsim\GD15162-PA 184 GD15162-PA 1..184 369..552 823 85.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10562-PA 553 GJ10562-PA 9..547 8..547 2169 75.4 Plus
Dvir\GJ17792-PA 580 GJ17792-PA 13..559 10..548 1197 42.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14507-PA 554 GK14507-PA 1..548 1..549 2306 76.5 Plus
Dwil\GK24427-PA 574 GK24427-PA 14..561 11..548 1181 42.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24596-PA 552 GE24596-PA 1..552 1..552 2874 95.5 Plus
Dyak\GE17067-PA 572 GE17067-PA 13..560 10..548 1382 46.2 Plus