Clone LD23619 Report

Search the DGRC for LD23619

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:19
Vector:pOT2
Associated Gene/TranscriptUde-RB
Protein status:LD23619.pep: gold
Preliminary Size:1473
Sequenced Size:1493

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18410 2001-01-01 Release 2 assignment
CG18410 2001-07-04 Blastp of sequenced clone
CG18410 2003-01-01 Sim4 clustering to Release 3
CG18410 2008-04-29 Release 5.5 accounting
CG18410 2008-08-15 Release 5.9 accounting
CG18410 2008-12-18 5.12 accounting

Clone Sequence Records

LD23619.complete Sequence

1493 bp (1493 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051686

> LD23619.complete
CTCTGATCAGTGCCTCTCAGTGGTGCTCATTTTGCGTCTTCCTCCCATGA
TTAAGTGCCATATGCCGTCGAGTTGGAGACGGCTACGCAAAATCAGTCGT
ATTCTAGCGCTGACAGGAAGCAGACAGATACTCACCCAAGTATTAGCAAC
CAAAGGAGCAGCAATGGCAGAGGGAGATTCGAAATTTGGCTTCAAGGACA
TGGAGAAGGCGTTAGAGACGTTGAAGCTGCTGGAGAGTCACGACATGCAG
TATCGCAAGCTGACGGTGCGCGGTTTGCTTGGCCGGGCCAAAAGAGTCCT
GACAATGACCAAGGCGGAGGAGAAGCTGAAGAACATCAATGCGGCCATTG
GAGTCTTTGAAAAGTGGCTGGAGGAGAATGGCGGAGGGGCGTCCAGCAAG
AATGCCAAGACAGAGAGCGAGGACAAGGTGGAGACGGTGCCGGGATTGGG
ATTCAAGGACAAGGCTGCTGCGGAGGCAACGCTGAGCATTTTGGCGGAAC
GAGATCCGGACTACCAGAGGTTGGCCATCAAGGGATTGATTGGCAGCTCC
AAGCGTGTCCTGTCAGGCACCAAGAACGAGGACAAGATCACGGCCATAAA
GGAGGGAGTCCAGGTACTTGAGGATTTCCTCGAAAAGTTCGAGGCCGAGA
ATCGTATCAAGGACAATCGAGCATACTTGCCACTCGCCGTGGTCACCAAA
CTGCCCGATCCCAAAGATGAGTTGGCTAAGGAGTTTCTCGAAGCCTATGG
CGGCTCCAAGGCCAAGGGTAACTACAAGCACCTGCGCACAATGTTCCCCA
AAACGGATGAAAAGACCAGCTGGGATATTGTGCGCAATCGTCAGCTGTCC
AAGTTGCTGGAGCAGATTAAGAGTGAGGAGGCCAAGCTCTTCGATGCAGA
GACCGGAGCACCCACCGACCTGCACCTGCAGTTGATCCACTGGGCATACA
GTCCGCAGCCGGACAAGCTGAAGCAGTACATCGAAAAGCTGGCCAAGAAG
ACGCCCGAAAAGCGCAAGCAGGAGAGCAGCAGCAGTGCCAGCGATTCCAG
TGCCACCAGCCAGGATTCCGATGGCGAGGATAAGCCCAAAAGGAAGAAGA
AGAGGGAGGAGTGAGGTCTAAACAATCAAAAACACTCTGTTGCCATTTAT
TAACGAACAGAAACGGTTCAAACAGCTCTGTTTCCGGTTTCTCCAACCGA
TGCAATTTGGTGGACTTTAGATTTAACAATTTTTTTTTTAAATATTACCT
TATTGAACTGAAGTTTCATGGTTTCCTAATCTGCCAGATTGCACGGTCTT
CGAAATCGAAAACTGGCTAAATAGTTTATTTAAGTAACTCAACCTCAATG
CAGAACTACGATATTTGGTGGACACATGGCTGCTTTCCTCTGTAACCCCC
TCTATGTACACAGATAGATACATATATATGTATACATAAGCGCTCAAGTA
TATATTCTATATGTTAATATTGTAAAAAAAAAAAAAAAAAAAA

LD23619.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18410-RA 1706 CG18410-RA 76..1551 1..1476 7380 100 Plus
Ets96B-RA 2631 Ets96B-RA 2267..2631 1476..1112 1825 100 Minus
Ets96B.a 2805 Ets96B.a 2441..2805 1476..1112 1825 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20620799..20621787 1473..485 4930 99.9 Minus
chr3R 27901430 chr3R 20622580..20622882 305..3 1455 98.7 Minus
chr3R 27901430 chr3R 20622352..20622523 477..306 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24797592..24798583 1476..485 4960 100 Minus
3R 32079331 3R 24799364..24799668 305..1 1525 100 Minus
3R 32079331 3R 24799127..24799307 486..306 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24538423..24539414 1476..485 4960 100 Minus
3R 31820162 3R 24540195..24540499 305..1 1525 100 Minus
3R 31820162 3R 24539958..24540138 486..306 905 100 Minus
Blast to na_te.dros performed 2019-03-16 00:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 417..482 1408..1472 129 68.2 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 3652..3822 998..833 123 58.5 Minus

LD23619.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:44:27 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20622580..20622884 1..305 98   Minus
chr3R 20622342..20622523 306..486 97 <- Minus
chr3R 20620799..20621785 487..1473 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:30 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1068 47..1114 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:14 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1068 47..1114 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:58:11 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RB 1..951 164..1114 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:52 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1068 47..1114 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:12:51 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RB 1..951 164..1114 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:26 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1473 1..1473 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:14 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1473 1..1473 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:58:11 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 1..1473 1..1473 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:52 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
CG18410-RA 1..1473 1..1473 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:12:51 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
Ude-RC 1..1473 1..1473 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:27 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24797595..24798581 487..1473 100 <- Minus
3R 24799127..24799307 306..486 100 <- Minus
3R 24799364..24799668 1..305 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:27 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24797595..24798581 487..1473 100 <- Minus
3R 24799127..24799307 306..486 100 <- Minus
3R 24799364..24799668 1..305 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:44:27 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24797595..24798581 487..1473 100 <- Minus
3R 24799127..24799307 306..486 100 <- Minus
3R 24799364..24799668 1..305 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:58:11 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20623317..20624303 487..1473 100 <- Minus
arm_3R 20624849..20625029 306..486 100 <- Minus
arm_3R 20625086..20625390 1..305 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:35 Download gff for LD23619.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24539958..24540138 306..486 100 <- Minus
3R 24538426..24539412 487..1473 100 <- Minus
3R 24540195..24540499 1..305 100   Minus

LD23619.hyp Sequence

Translation from 0 to 1113

> LD23619.hyp
SDQCLSVVLILRLPPMIKCHMPSSWRRLRKISRILALTGSRQILTQVLAT
KGAAMAEGDSKFGFKDMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVL
TMTKAEEKLKNINAAIGVFEKWLEENGGGASSKNAKTESEDKVETVPGLG
FKDKAAAEATLSILAERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIK
EGVQVLEDFLEKFEAENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYG
GSKAKGNYKHLRTMFPKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAE
TGAPTDLHLQLIHWAYSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSS
ATSQDSDGEDKPKRKKKREE*

LD23619.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:41:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-PD 316 CG18410-PD 1..316 55..370 1597 100 Plus
Ude-PC 316 CG18410-PC 1..316 55..370 1597 100 Plus
Ude-PB 316 CG18410-PB 1..316 55..370 1597 100 Plus

LD23619.pep Sequence

Translation from 46 to 1113

> LD23619.pep
MIKCHMPSSWRRLRKISRILALTGSRQILTQVLATKGAAMAEGDSKFGFK
DMEKALETLKLLESHDMQYRKLTVRGLLGRAKRVLTMTKAEEKLKNINAA
IGVFEKWLEENGGGASSKNAKTESEDKVETVPGLGFKDKAAAEATLSILA
ERDPDYQRLAIKGLIGSSKRVLSGTKNEDKITAIKEGVQVLEDFLEKFEA
ENRIKDNRAYLPLAVVTKLPDPKDELAKEFLEAYGGSKAKGNYKHLRTMF
PKTDEKTSWDIVRNRQLSKLLEQIKSEEAKLFDAETGAPTDLHLQLIHWA
YSPQPDKLKQYIEKLAKKTPEKRKQESSSSASDSSATSQDSDGEDKPKRK
KKREE*

LD23619.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23181-PA 316 GF23181-PA 1..316 40..355 1425 88.6 Plus
Dana\GF13963-PA 91 GF13963-PA 6..83 7..69 186 56.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12323-PA 316 GG12323-PA 1..316 40..355 1606 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:42:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18464-PA 316 GH18464-PA 1..287 40..326 1310 85.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ude-PD 316 CG18410-PD 1..316 40..355 1597 100 Plus
Ude-PC 316 CG18410-PC 1..316 40..355 1597 100 Plus
Ude-PB 316 CG18410-PB 1..316 40..355 1597 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24043-PA 315 GI24043-PA 1..315 40..355 1274 78.8 Plus
Dmoj\GI24043-PA 315 GI24043-PA 81..157 39..109 150 42.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13863-PA 345 GL13863-PA 9..314 20..326 1376 84.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14925-PA 316 GA14925-PA 1..287 40..326 1348 87.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23464-PA 316 GM23464-PA 1..316 40..355 1601 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18271-PA 315 GD18271-PA 1..303 40..343 1332 89.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23671-PA 436 GJ23671-PA 98..404 18..324 1313 80.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13169-PA 319 GK13169-PA 1..286 40..325 1322 86.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10776-PA 316 GE10776-PA 1..316 40..355 1606 97.2 Plus