Clone LD23630 Report

Search the DGRC for LD23630

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:30
Vector:pOT2
Associated Gene/TranscriptCG8478-RB
Protein status:LD23630.pep: gold
Preliminary Size:4600
Sequenced Size:2141

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8478 2001-01-01 Release 2 assignment
CG8478 2001-07-04 Blastp of sequenced clone
CG8478 2003-01-01 Sim4 clustering to Release 3
CG8478 2008-04-29 Release 5.5 accounting
CG8478 2008-08-15 Release 5.9 accounting
CG8478 2008-12-18 5.12 accounting

Clone Sequence Records

LD23630.complete Sequence

2141 bp (2141 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051687

> LD23630.complete
ACGCTTTGTTTTTTCGGTACAGCGTCGGTCTTCAGCTGCTCGAATTTTTG
CTTAATTGCTTGTATTTATTAATTTGGGAATTCCTCGTGGCCAATTGGGA
ATAGCATATACTTAACCATGGACGATTCGCGCAGAACTATGGCCGGCAAG
ATCGATTCCCGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCAT
GTATTTATCCTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGT
CGGCCCTGGTCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAG
GTGGAGGTAAACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGA
TCTGCATCAGTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCC
CATTTGACAAAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCC
TCCAAGGGCAATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAG
CATAGATCTGACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGT
GTGGCGGCGATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAAT
ACGGTTAAGGCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGT
ATCCTTGCAGGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCT
TGAGTGCGAACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGA
GTATCCATGCTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGT
CAACGAGGTAGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGA
TCTCCGCTGATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCG
GGCAAGAAGAGGCAGTCCATGAGCTCCACTTATTCGGGTGCCGCCCTACC
GCGCCCTCGGCGCTCCTATCTGCCCACCACCACCGCAGAGACGCGAACGT
ACTCCTTCAAGCAGCGCATGTCGGTGGTGGTCAAGACAACGCTCAACAGC
CCAGCTCGCAAGCGGAGTGTCGGTGGCGGTGTGTCACTAAGCCGTCGCAG
CTGCTTGCCCGTCTCCAAGCTAACAAAGAGCAGCATAAGAAAGTCGCTCG
CTGTGACCAGCGTGCGTTCGCCTGAGAAGATCGCCTCAAAGCCGGCTAAG
ACATCGACAAAAAGCATTCCGGAGAAAGTTTTTAGCTGCAAGAATTGCAG
CACAACCTTTCGGGTGAAGTCACTTCTTGACGTGCATATGCGAATGCACG
ATCCGGTTGACAACGGAGCCAATACCCTTAAGCGTCTGAACAGCAATCCG
GTTGCAGCGGGAGTCTCGAAGAATCGCTGCAAGTTTTGCGATAAGAATTT
CGCACTGGAACGTGCCTTGCACATCCATTTAATGCAGAACTGCGACAAGA
TACCGCCGTCCGAGAAGCGCAAGCTGGAGTTCACCGAGCTGAACCACGAG
AAGAAAGCCCAGCTGCCAAAGATCGGTGGCACCAGTGGCATTAACCATCC
CATGACGATGCCCCAGAAGCCACAGCAACGCATTAGTACTATTCCCAAAT
TAGCTCCCTCACAAGGAACCCAGTCCATGGCTCCACCGAGCGTGAAAAAA
ATTCCCAAGAATGTGGCGCATGCCGGCGTCTACCGCACTCCCACAAAGAC
TGTGCCCTGCCACATCTGCAAGCAGTCGTTTAGGAGCATACTCGAGTTCA
CAAACCACAGCCTGACGGTGCATGGAAACAACCAGCTTAAGAAGATGACC
GGCAGAGAGGATGCACAGAGTGCCCACGATTAAATTAAGCGATTCGTGTG
TAGCCTAGTCTATGTCTAAGTTAAGTGCTGTGGCGTAGCTGTGGTCCGGT
AACGGCGCGTTGTGAACAGATCGCCGGGCAGCTGTGAGTTAGCAATGCCT
GGCATTTCGAGCGCTTCTAACTCAATGTTTCGGTTACTCGAATGCTTATT
AATTGTACACTTCAGCTGCACGACTGGACTGCTTTGTGAATTTTTTAGGT
TTTCGTATGACATTCACACAAAAATAACTATCGTAGTCTAAATGACAGTA
ATTACATTATATTCTAGGTTACTAAAAAAAAAAAAAAAAAA

LD23630.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8478.a 2446 CG8478.a 317..2444 1..2128 10640 100 Plus
CG8478-RB 2450 CG8478-RB 317..2444 1..2128 10640 100 Plus
CG8478-RD 2281 CG8478-RD 300..2279 149..2128 9900 100 Plus
CG8478-RD 2281 CG8478-RD 137..286 1..150 750 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5590515..5591383 735..1603 4315 99.8 Plus
chr3R 27901430 chr3R 5589875..5590462 149..736 2940 100 Plus
chr3R 27901430 chr3R 5591443..5591964 1602..2123 2535 99 Plus
chr3R 27901430 chr3R 5589622..5589771 1..150 735 99.3 Plus
chrX 22417052 chrX 8585227..8585315 1972..2059 320 93.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9764679..9765547 735..1603 4345 100 Plus
3R 32079331 3R 9764039..9764626 149..736 2940 100 Plus
3R 32079331 3R 9765607..9766133 1602..2128 2635 100 Plus
3R 32079331 3R 9763786..9763935 1..150 750 100 Plus
X 23542271 X 8693470..8693558 1972..2059 320 93.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9505510..9506378 735..1603 4345 100 Plus
3R 31820162 3R 9504870..9505457 149..736 2940 100 Plus
3R 31820162 3R 9506438..9506964 1602..2128 2635 100 Plus
3R 31820162 3R 9504617..9504766 1..150 750 100 Plus
X 23527363 X 8701568..8701656 1972..2059 330 93.2 Plus
Blast to na_te.dros performed on 2019-03-16 20:23:12 has no hits.

LD23630.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:24:05 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5589622..5589771 1..150 99 -> Plus
chr3R 5589877..5590462 151..736 100 -> Plus
chr3R 5590517..5591383 737..1603 99 -> Plus
chr3R 5591445..5591964 1604..2123 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:31 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 1..1716 118..1833 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:15 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 1..1716 118..1833 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:21:55 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 1..1716 118..1833 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:54 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 1..1716 118..1833 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:35 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 1..1716 118..1833 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:28 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 137..2259 1..2123 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:15 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 137..2259 1..2123 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:21:55 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 137..2259 1..2123 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:54 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 137..2259 1..2123 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:35 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
CG8478-RB 137..2259 1..2123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:05 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9763786..9763935 1..150 100 -> Plus
3R 9764041..9764626 151..736 100 -> Plus
3R 9764681..9765547 737..1603 100 -> Plus
3R 9765609..9766128 1604..2123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:05 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9763786..9763935 1..150 100 -> Plus
3R 9764041..9764626 151..736 100 -> Plus
3R 9764681..9765547 737..1603 100 -> Plus
3R 9765609..9766128 1604..2123 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:24:05 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9763786..9763935 1..150 100 -> Plus
3R 9764041..9764626 151..736 100 -> Plus
3R 9764681..9765547 737..1603 100 -> Plus
3R 9765609..9766128 1604..2123 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:21:55 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5589508..5589657 1..150 100 -> Plus
arm_3R 5589763..5590348 151..736 100 -> Plus
arm_3R 5590403..5591269 737..1603 100 -> Plus
arm_3R 5591331..5591850 1604..2123 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:36 Download gff for LD23630.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9504617..9504766 1..150 100 -> Plus
3R 9504872..9505457 151..736 100 -> Plus
3R 9505512..9506378 737..1603 100 -> Plus
3R 9506440..9506959 1604..2123 100   Plus

LD23630.pep Sequence

Translation from 117 to 1832

> LD23630.pep
MDDSRRTMAGKIDSRSSSIMTNDESVSMYLSFDAEDTLSNAKWQSALVTQ
NSQFLEVHNSKVEVNTDDKDLRRTILKDLHQLTIGEPDQNSPLRPFDKSI
LNRHNALCSTPSKGNISTETQTPQIMESIDLTQIDDKENTQPEGCGGDNS
TLSSSVDVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVV
LENITEVSNEGVSMLVSPAGAEKEVAHVNEVVNEVSELIAKALKISADSV
KPATSKLKVEAGKKRQSMSSTYSGAALPRPRRSYLPTTTAETRTYSFKQR
MSVVVKTTLNSPARKRSVGGGVSLSRRSCLPVSKLTKSSIRKSLAVTSVR
SPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNG
ANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQNCDKIPPSEK
RKLEFTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQG
TQSMAPPSVKKIPKNVAHAGVYRTPTKTVPCHICKQSFRSILEFTNHSLT
VHGNNQLKKMTGREDAQSAHD*

LD23630.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23037-PA 564 GF23037-PA 1..564 1..571 1710 63.9 Plus
Dana\GF22408-PA 385 GF22408-PA 220..320 368..469 237 44.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17114-PA 568 GG17114-PA 1..568 1..571 2433 83.3 Plus
Dere\GG18110-PA 342 GG18110-PA 204..330 372..489 224 38.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17408-PA 578 GH17408-PA 1..563 1..556 1055 43.6 Plus
Dgri\GH23582-PA 332 GH23582-PA 157..264 363..467 206 40.7 Plus
Dgri\GH12334-PA 344 GH12334-PA 169..276 363..467 206 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8478-PE 571 CG8478-PE 1..571 1..571 2907 100 Plus
CG8478-PB 571 CG8478-PB 1..571 1..571 2907 100 Plus
CG8478-PC 572 CG8478-PC 1..572 1..571 2895 99.8 Plus
CG8478-PD 576 CG8478-PD 1..576 1..571 2891 99.1 Plus
CG6470-PB 337 CG6470-PB 10..293 204..467 228 25.9 Plus
CG6470-PA 337 CG6470-PA 10..293 204..467 228 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22738-PA 610 GI22738-PA 1..596 12..556 886 38.7 Plus
Dmoj\GI15584-PA 304 GI15584-PA 134..246 360..469 213 41.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24303-PA 564 GL24303-PA 1..564 1..571 1595 58.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21104-PA 564 GA21104-PA 1..564 1..571 1606 58.3 Plus
Dpse\GA19619-PA 281 GA19619-PA 183..276 372..466 203 42.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23835-PA 323 GM23835-PA 1..314 1..314 1496 93.1 Plus
Dsec\GM23836-PA 179 GM23836-PA 1..179 393..571 907 92.7 Plus
Dsec\GM22802-PA 331 GM22802-PA 193..289 372..469 229 44.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22740-PA 540 GJ22740-PA 1..526 1..556 1151 48.2 Plus
Dvir\GJ15188-PA 325 GJ15188-PA 152..315 360..529 225 34.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11963-PA 518 GK11963-PA 1..510 1..558 1129 48.5 Plus
Dwil\GK16023-PA 352 GK16023-PA 194..295 367..469 249 45.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25983-PA 355 GE25983-PA 1..341 1..339 1457 86.3 Plus
Dyak\GE25984-PA 153 GE25984-PA 1..153 421..571 674 86.3 Plus
Dyak\GE15516-PA 346 GE15516-PA 209..305 372..469 222 43.9 Plus

LD23630.hyp Sequence

Translation from 117 to 1832

> LD23630.hyp
MDDSRRTMAGKIDSRSSSIMTNDESVSMYLSFDAEDTLSNAKWQSALVTQ
NSQFLEVHNSKVEVNTDDKDLRRTILKDLHQLTIGEPDQNSPLRPFDKSI
LNRHNALCSTPSKGNISTETQTPQIMESIDLTQIDDKENTQPEGCGGDNS
TLSSSVDVTANTVKANTLKTGDATMDNVSLQEAAKTPAPSQVYPLSANVV
LENITEVSNEGVSMLVSPAGAEKEVAHVNEVVNEVSELIAKALKISADSV
KPATSKLKVEAGKKRQSMSSTYSGAALPRPRRSYLPTTTAETRTYSFKQR
MSVVVKTTLNSPARKRSVGGGVSLSRRSCLPVSKLTKSSIRKSLAVTSVR
SPEKIASKPAKTSTKSIPEKVFSCKNCSTTFRVKSLLDVHMRMHDPVDNG
ANTLKRLNSNPVAAGVSKNRCKFCDKNFALERALHIHLMQNCDKIPPSEK
RKLEFTELNHEKKAQLPKIGGTSGINHPMTMPQKPQQRISTIPKLAPSQG
TQSMAPPSVKKIPKNVAHAGVYRTPTKTVPCHICKQSFRSILEFTNHSLT
VHGNNQLKKMTGREDAQSAHD*

LD23630.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8478-PE 571 CG8478-PE 1..571 1..571 2907 100 Plus
CG8478-PB 571 CG8478-PB 1..571 1..571 2907 100 Plus
CG8478-PC 572 CG8478-PC 1..572 1..571 2895 99.8 Plus
CG8478-PD 576 CG8478-PD 1..576 1..571 2891 99.1 Plus
CG6470-PB 337 CG6470-PB 10..293 204..467 228 25.9 Plus