BDGP Sequence Production Resources |
Search the DGRC for LD23642
Library: | LD |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Ling Hong |
Date Registered: | 1997-12-04 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 236 |
Well: | 42 |
Vector: | pOT2 |
Associated Gene/Transcript | Ate1-RA |
Protein status: | LD23642.pep: gold |
Preliminary Size: | 2231 |
Sequenced Size: | 1613 |
Gene | Date | Evidence |
---|---|---|
CG9204 | 2001-01-01 | Release 2 assignment |
CG9204 | 2001-07-04 | Blastp of sequenced clone |
Ate1 | 2008-04-29 | Release 5.5 accounting |
Ate1 | 2008-08-15 | Release 5.9 accounting |
Ate1 | 2008-12-18 | 5.12 accounting |
1613 bp (1613 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051688
> LD23642.complete CGGCTTGCAGCTTTAATATTTTAGTCGTAATTAAATGCAATATGTTTGTA CTATAAACGCCGTCGGAAGAGCTTAATAATGAGCTTGAGCATTGTGAGTT ACTATGGCAGCCAGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGC AGCCTGTCGCACGGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCA GGACCTCATCGATCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGC TGCGCAACCAGGAGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGC CTGGAGTTCAAGCTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAA TCGATTTTTGCGCGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACG GTGACGGGGAAGCCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACG GCCAGCGAACCGCAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAA TGTCGAGCAAGTTGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGC AGGCAACTGCTGCCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCC GCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATT GGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAAT CCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAG ACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGA GTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGAAGTATCAGA TATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTACAAGGAGCAT CTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGGTCCCGAAAT GGGCTACGGTTCGTTTCATCAGCAGTACTGGCTGGACGACAAGTTGATTG CCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTAAGCTCGGTGTACTTT TTCTACGATCCGGACTATAGCTTTTTATCGCTTGGCACATATGGTTCACT CAGGGAAATTGAATTGGTGCAGTCGCTCGCCGAGAAGGTGCCTTCTCTCA AGTATTACTATATGGGTTTCTACATACACTCCTGTCCCAAAATGCGCTAC AAGGGCAAGTTGTCCCCCTCTTACTTGCTGTGCCCGGAGACCTATGAATG GCTACCGCTCACCGATGTTATTCGTGCTAAGCTAGACGAACATAAATACC AGCGCTTAAACGAAGATCCTGCAGCTAGGGATGTGAATGAGTTTTTGATG GAGCATTTGGACGAAGTTAAGCTGCTCTTGGGTGGAAGAACCCGCACAGA CTACAAGCACTTTAGGCAGCTGCGTGGGACCGTCTCCGATGACGATATCA TTATTGAGTACAGCAAGCTCGTGGGAAAAGAGTGTGCTCGGCGCATGCTA TACGTGAAGTAAAGTTGCCATTATTTGAATTTTGAATTAAATGCCGTTCG CAATAGCAATATGTTGAAAATATAAAATATTTTAATAATTCCTAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ate1-RA | 1719 | Ate1-RA | 45..1636 | 1..1592 | 7960 | 100 | Plus |
Ate1-RB | 1696 | Ate1-RB | 664..1657 | 599..1592 | 4970 | 100 | Plus |
Ate1-RC | 2860 | Ate1-RC | 45..815 | 1..771 | 3855 | 100 | Plus |
Ate1-RC | 2860 | Ate1-RC | 967..1639 | 920..1592 | 3365 | 100 | Plus |
Ate1-RB | 1696 | Ate1-RB | 45..643 | 1..599 | 2995 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16143730..16144165 | 598..163 | 2090 | 98.6 | Minus |
chr2R | 21145070 | chr2R | 16142663..16142852 | 1108..919 | 920 | 98.9 | Minus |
chr2R | 21145070 | chr2R | 16142006..16142181 | 1592..1417 | 880 | 100 | Minus |
chr2R | 21145070 | chr2R | 16143471..16143648 | 776..599 | 845 | 98.3 | Minus |
chr2R | 21145070 | chr2R | 16142448..16142614 | 1267..1101 | 835 | 100 | Minus |
chr2R | 21145070 | chr2R | 16144235..16144400 | 166..1 | 815 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 16142926..16143077 | 921..770 | 760 | 100 | Minus |
chr2R | 21145070 | chr2R | 16142237..16142389 | 1419..1267 | 750 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20256690..20257125 | 598..163 | 2180 | 100 | Minus |
2R | 25286936 | 2R | 20255623..20255812 | 1108..919 | 935 | 99.5 | Minus |
2R | 25286936 | 2R | 20254966..20255141 | 1592..1417 | 880 | 100 | Minus |
2R | 25286936 | 2R | 20256431..20256608 | 776..599 | 875 | 99.4 | Minus |
2R | 25286936 | 2R | 20255408..20255574 | 1267..1101 | 835 | 100 | Minus |
2R | 25286936 | 2R | 20257196..20257360 | 165..1 | 825 | 100 | Minus |
2R | 25286936 | 2R | 20255197..20255349 | 1419..1267 | 765 | 100 | Minus |
2R | 25286936 | 2R | 20255886..20256037 | 921..770 | 760 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20257889..20258324 | 598..163 | 2180 | 100 | Minus |
2R | 25260384 | 2R | 20256822..20257011 | 1108..919 | 935 | 99.4 | Minus |
2R | 25260384 | 2R | 20256165..20256340 | 1592..1417 | 880 | 100 | Minus |
2R | 25260384 | 2R | 20257630..20257807 | 776..599 | 875 | 99.4 | Minus |
2R | 25260384 | 2R | 20256607..20256773 | 1267..1101 | 835 | 100 | Minus |
2R | 25260384 | 2R | 20258395..20258559 | 165..1 | 825 | 100 | Minus |
2R | 25260384 | 2R | 20256396..20256548 | 1419..1267 | 765 | 100 | Minus |
2R | 25260384 | 2R | 20257085..20257236 | 921..770 | 760 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 2564..2695 | 1590..1462 | 128 | 62.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16142237..16142388 | 1268..1419 | 99 | <- | Minus |
chr2R | 16142036..16142178 | 1420..1562 | 100 | <- | Minus |
chr2R | 16142448..16142611 | 1104..1267 | 100 | <- | Minus |
chr2R | 16142668..16142849 | 922..1103 | 99 | <- | Minus |
chr2R | 16142926..16143075 | 772..921 | 100 | <- | Minus |
chr2R | 16143476..16143648 | 599..771 | 98 | <- | Minus |
chr2R | 16143730..16144164 | 164..598 | 98 | <- | Minus |
chr2R | 16144238..16144400 | 1..163 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 1..1434 | 79..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 1..1434 | 79..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 1..1434 | 79..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 1..1434 | 79..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 1..1434 | 79..1512 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 22..1613 | 1..1592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 22..1613 | 1..1592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 31..1622 | 1..1592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 22..1613 | 1..1592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ate1-RA | 31..1622 | 1..1592 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20255886..20256035 | 772..921 | 100 | <- | Minus |
2R | 20256436..20256608 | 599..771 | 100 | <- | Minus |
2R | 20254965..20255138 | 1420..1593 | 99 | <- | Minus |
2R | 20255197..20255348 | 1268..1419 | 100 | <- | Minus |
2R | 20255408..20255571 | 1104..1267 | 100 | <- | Minus |
2R | 20255628..20255809 | 922..1103 | 100 | <- | Minus |
2R | 20256690..20257124 | 164..598 | 100 | <- | Minus |
2R | 20257198..20257360 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20255886..20256035 | 772..921 | 100 | <- | Minus |
2R | 20256436..20256608 | 599..771 | 100 | <- | Minus |
2R | 20254965..20255138 | 1420..1593 | 99 | <- | Minus |
2R | 20255197..20255348 | 1268..1419 | 100 | <- | Minus |
2R | 20255408..20255571 | 1104..1267 | 100 | <- | Minus |
2R | 20255628..20255809 | 922..1103 | 100 | <- | Minus |
2R | 20256690..20257124 | 164..598 | 100 | <- | Minus |
2R | 20257198..20257360 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20255886..20256035 | 772..921 | 100 | <- | Minus |
2R | 20256436..20256608 | 599..771 | 100 | <- | Minus |
2R | 20254965..20255138 | 1420..1593 | 99 | <- | Minus |
2R | 20255197..20255348 | 1268..1419 | 100 | <- | Minus |
2R | 20255408..20255571 | 1104..1267 | 100 | <- | Minus |
2R | 20255628..20255809 | 922..1103 | 100 | <- | Minus |
2R | 20256690..20257124 | 164..598 | 100 | <- | Minus |
2R | 20257198..20257360 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16142470..16142643 | 1420..1593 | 99 | <- | Minus |
arm_2R | 16142702..16142853 | 1268..1419 | 100 | <- | Minus |
arm_2R | 16142913..16143076 | 1104..1267 | 100 | <- | Minus |
arm_2R | 16143133..16143314 | 922..1103 | 100 | <- | Minus |
arm_2R | 16143391..16143540 | 772..921 | 100 | <- | Minus |
arm_2R | 16143941..16144113 | 599..771 | 100 | <- | Minus |
arm_2R | 16144195..16144629 | 164..598 | 100 | <- | Minus |
arm_2R | 16144703..16144865 | 1..163 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20256164..20256337 | 1420..1593 | 99 | <- | Minus |
2R | 20256396..20256547 | 1268..1419 | 100 | <- | Minus |
2R | 20256607..20256770 | 1104..1267 | 100 | <- | Minus |
2R | 20256827..20257008 | 922..1103 | 100 | <- | Minus |
2R | 20257085..20257234 | 772..921 | 100 | <- | Minus |
2R | 20257635..20257807 | 599..771 | 100 | <- | Minus |
2R | 20257889..20258323 | 164..598 | 100 | <- | Minus |
2R | 20258397..20258559 | 1..163 | 100 | Minus |
Translation from 78 to 1511
> LD23642.hyp MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG TVSDDDIIIEYSKLVGKECARRMLYVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ate1-PA | 477 | CG9204-PA | 1..477 | 1..477 | 2548 | 100 | Plus |
Ate1-PB | 484 | CG9204-PB | 1..484 | 1..477 | 2530 | 98.6 | Plus |
Ate1-PC | 478 | CG9204-PC | 1..478 | 1..477 | 2338 | 92.9 | Plus |
Ate1-PD | 485 | CG9204-PD | 1..485 | 1..477 | 2320 | 91.6 | Plus |
Translation from 78 to 1511
> LD23642.pep MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG TVSDDDIIIEYSKLVGKECARRMLYVK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13155-PA | 537 | GF13155-PA | 1..534 | 1..476 | 1810 | 66 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20876-PA | 530 | GG20876-PA | 1..527 | 1..476 | 2076 | 78.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22745-PA | 536 | GH22745-PA | 1..533 | 1..476 | 1566 | 59.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ate1-PA | 477 | CG9204-PA | 1..477 | 1..477 | 2548 | 100 | Plus |
Ate1-PB | 484 | CG9204-PB | 1..484 | 1..477 | 2530 | 98.6 | Plus |
Ate1-PC | 478 | CG9204-PC | 1..478 | 1..477 | 2338 | 92.9 | Plus |
Ate1-PD | 485 | CG9204-PD | 1..485 | 1..477 | 2320 | 91.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18527-PA | 537 | GI18527-PA | 1..534 | 1..476 | 1553 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17575-PA | 495 | GL17575-PA | 1..492 | 1..476 | 1705 | 69.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24830-PB | 480 | GA24830-PB | 1..477 | 1..476 | 1863 | 72.5 | Plus |
Dpse\GA24830-PA | 531 | GA24830-PA | 1..528 | 1..476 | 1806 | 65.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\Ate1-PA | 528 | GM19800-PA | 1..528 | 1..477 | 2261 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Ate1-PA | 528 | GD25293-PA | 1..528 | 1..477 | 2284 | 82.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21393-PA | 541 | GJ21393-PA | 1..538 | 1..476 | 1622 | 61 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15677-PA | 541 | GK15677-PA | 1..541 | 1..477 | 1593 | 59.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13816-PA | 528 | GE13816-PA | 1..525 | 1..476 | 2189 | 79.1 | Plus |