Clone LD23642 Report

Search the DGRC for LD23642

Clone and Library Details

Library:LD
Tissue Source:Drosophila melanogaster embryo
Created by:Ling Hong
Date Registered:1997-12-04
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:236
Well:42
Vector:pOT2
Associated Gene/TranscriptAte1-RA
Protein status:LD23642.pep: gold
Preliminary Size:2231
Sequenced Size:1613

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9204 2001-01-01 Release 2 assignment
CG9204 2001-07-04 Blastp of sequenced clone
Ate1 2008-04-29 Release 5.5 accounting
Ate1 2008-08-15 Release 5.9 accounting
Ate1 2008-12-18 5.12 accounting

Clone Sequence Records

LD23642.complete Sequence

1613 bp (1613 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051688

> LD23642.complete
CGGCTTGCAGCTTTAATATTTTAGTCGTAATTAAATGCAATATGTTTGTA
CTATAAACGCCGTCGGAAGAGCTTAATAATGAGCTTGAGCATTGTGAGTT
ACTATGGCAGCCAGCAGAGCAAGTGCGGCTACTGCGCGGGAGCGAACTGC
AGCCTGTCGCACGGTATGCACGCGTATCAGCTGGACTGCCGGGACTATCA
GGACCTCATCGATCGCGGCTGGCGGCGGTGCGGCTACTACTGCTACAAGC
TGCGCAACCAGGAGACCTGCTGCCCCTGCTACACAATCAAATGTAATGGC
CTGGAGTTCAAGCTCTCCAAGTCGAACAAGCGCATACTTCGCCGCATAAA
TCGATTTTTGCGCGACGGCAAGCGAGAGTCCAAACCGGAAGCCGGCGACG
GTGACGGGGAAGCCGATGCCGATTACGCCATAGTGGCTCCCGAGGTCACG
GCCAGCGAACCGCAACCCCAGCTGCCAGATAAGAGTCCCCCTGTTATCAA
TGTCGAGCAAGTTGCATCACTGGCAACGGCTCAGAGGAAGCCGACGAAGC
AGGCAACTGCTGCCGCGGTGGAAGCTCCTACGTTGGGGTCCAACAAATCC
GCAGCACCGATCTCAAACAAGCCGTGCAAGAAGGCCAAGCAGATGCGATT
GGATCGACGGCTGGCCAAGCTGGGAGACTCGGCCTCCTACTCAACGAAAT
CCCTTACCCAGGAAAAGACACTTCGCGACTTCTTGAACACGGACAGCGAG
ACAAACAAACATCGGCTAAAGCTGCGCTTAATTCACGTCTACGACGACGA
GTTCCGGCGGACCCTGCCCCAGAGTTTTGCGCTCTATAAGAAGTATCAGA
TATCGATACATAATGATCCGCCAAAGGATCAGGACGCGTACAAGGAGCAT
CTGCAGGCGACTCCCCTACAGAATGAGAAACCCTGGGATGGTCCCGAAAT
GGGCTACGGTTCGTTTCATCAGCAGTACTGGCTGGACGACAAGTTGATTG
CCGTCGGCGTGATTGACATTCTGCCGGGTTGTGTAAGCTCGGTGTACTTT
TTCTACGATCCGGACTATAGCTTTTTATCGCTTGGCACATATGGTTCACT
CAGGGAAATTGAATTGGTGCAGTCGCTCGCCGAGAAGGTGCCTTCTCTCA
AGTATTACTATATGGGTTTCTACATACACTCCTGTCCCAAAATGCGCTAC
AAGGGCAAGTTGTCCCCCTCTTACTTGCTGTGCCCGGAGACCTATGAATG
GCTACCGCTCACCGATGTTATTCGTGCTAAGCTAGACGAACATAAATACC
AGCGCTTAAACGAAGATCCTGCAGCTAGGGATGTGAATGAGTTTTTGATG
GAGCATTTGGACGAAGTTAAGCTGCTCTTGGGTGGAAGAACCCGCACAGA
CTACAAGCACTTTAGGCAGCTGCGTGGGACCGTCTCCGATGACGATATCA
TTATTGAGTACAGCAAGCTCGTGGGAAAAGAGTGTGCTCGGCGCATGCTA
TACGTGAAGTAAAGTTGCCATTATTTGAATTTTGAATTAAATGCCGTTCG
CAATAGCAATATGTTGAAAATATAAAATATTTTAATAATTCCTAAAAAAA
AAAAAAAAAAAAA

LD23642.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-RA 1719 Ate1-RA 45..1636 1..1592 7960 100 Plus
Ate1-RB 1696 Ate1-RB 664..1657 599..1592 4970 100 Plus
Ate1-RC 2860 Ate1-RC 45..815 1..771 3855 100 Plus
Ate1-RC 2860 Ate1-RC 967..1639 920..1592 3365 100 Plus
Ate1-RB 1696 Ate1-RB 45..643 1..599 2995 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16143730..16144165 598..163 2090 98.6 Minus
chr2R 21145070 chr2R 16142663..16142852 1108..919 920 98.9 Minus
chr2R 21145070 chr2R 16142006..16142181 1592..1417 880 100 Minus
chr2R 21145070 chr2R 16143471..16143648 776..599 845 98.3 Minus
chr2R 21145070 chr2R 16142448..16142614 1267..1101 835 100 Minus
chr2R 21145070 chr2R 16144235..16144400 166..1 815 99.4 Minus
chr2R 21145070 chr2R 16142926..16143077 921..770 760 100 Minus
chr2R 21145070 chr2R 16142237..16142389 1419..1267 750 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 19:13:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20256690..20257125 598..163 2180 100 Minus
2R 25286936 2R 20255623..20255812 1108..919 935 99.5 Minus
2R 25286936 2R 20254966..20255141 1592..1417 880 100 Minus
2R 25286936 2R 20256431..20256608 776..599 875 99.4 Minus
2R 25286936 2R 20255408..20255574 1267..1101 835 100 Minus
2R 25286936 2R 20257196..20257360 165..1 825 100 Minus
2R 25286936 2R 20255197..20255349 1419..1267 765 100 Minus
2R 25286936 2R 20255886..20256037 921..770 760 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20257889..20258324 598..163 2180 100 Minus
2R 25260384 2R 20256822..20257011 1108..919 935 99.4 Minus
2R 25260384 2R 20256165..20256340 1592..1417 880 100 Minus
2R 25260384 2R 20257630..20257807 776..599 875 99.4 Minus
2R 25260384 2R 20256607..20256773 1267..1101 835 100 Minus
2R 25260384 2R 20258395..20258559 165..1 825 100 Minus
2R 25260384 2R 20256396..20256548 1419..1267 765 100 Minus
2R 25260384 2R 20257085..20257236 921..770 760 100 Minus
Blast to na_te.dros performed 2019-03-15 15:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Damb\P-element_T 3329 Damb\P-element_T P_T 3329bp Derived from AF012414. 2564..2695 1590..1462 128 62.2 Minus

LD23642.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:55:01 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16142237..16142388 1268..1419 99 <- Minus
chr2R 16142036..16142178 1420..1562 100 <- Minus
chr2R 16142448..16142611 1104..1267 100 <- Minus
chr2R 16142668..16142849 922..1103 99 <- Minus
chr2R 16142926..16143075 772..921 100 <- Minus
chr2R 16143476..16143648 599..771 98 <- Minus
chr2R 16143730..16144164 164..598 98 <- Minus
chr2R 16144238..16144400 1..163 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:00:35 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 1..1434 79..1512 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:22:05 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 1..1434 79..1512 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:45:58 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 1..1434 79..1512 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:54:43 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 1..1434 79..1512 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:49 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 1..1434 79..1512 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:19:15 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:22:05 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:58 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 31..1622 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:54:43 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 22..1613 1..1592 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:49 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
Ate1-RA 31..1622 1..1592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:55:01 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 772..921 100 <- Minus
2R 20256436..20256608 599..771 100 <- Minus
2R 20254965..20255138 1420..1593 99 <- Minus
2R 20255197..20255348 1268..1419 100 <- Minus
2R 20255408..20255571 1104..1267 100 <- Minus
2R 20255628..20255809 922..1103 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:55:01 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 772..921 100 <- Minus
2R 20256436..20256608 599..771 100 <- Minus
2R 20254965..20255138 1420..1593 99 <- Minus
2R 20255197..20255348 1268..1419 100 <- Minus
2R 20255408..20255571 1104..1267 100 <- Minus
2R 20255628..20255809 922..1103 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:55:01 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20255886..20256035 772..921 100 <- Minus
2R 20256436..20256608 599..771 100 <- Minus
2R 20254965..20255138 1420..1593 99 <- Minus
2R 20255197..20255348 1268..1419 100 <- Minus
2R 20255408..20255571 1104..1267 100 <- Minus
2R 20255628..20255809 922..1103 100 <- Minus
2R 20256690..20257124 164..598 100 <- Minus
2R 20257198..20257360 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:58 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16142470..16142643 1420..1593 99 <- Minus
arm_2R 16142702..16142853 1268..1419 100 <- Minus
arm_2R 16142913..16143076 1104..1267 100 <- Minus
arm_2R 16143133..16143314 922..1103 100 <- Minus
arm_2R 16143391..16143540 772..921 100 <- Minus
arm_2R 16143941..16144113 599..771 100 <- Minus
arm_2R 16144195..16144629 164..598 100 <- Minus
arm_2R 16144703..16144865 1..163 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:32:25 Download gff for LD23642.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20256164..20256337 1420..1593 99 <- Minus
2R 20256396..20256547 1268..1419 100 <- Minus
2R 20256607..20256770 1104..1267 100 <- Minus
2R 20256827..20257008 922..1103 100 <- Minus
2R 20257085..20257234 772..921 100 <- Minus
2R 20257635..20257807 599..771 100 <- Minus
2R 20257889..20258323 164..598 100 <- Minus
2R 20258397..20258559 1..163 100   Minus

LD23642.hyp Sequence

Translation from 78 to 1511

> LD23642.hyp
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD
SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF
ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY
WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL
AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA
KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG
TVSDDDIIIEYSKLVGKECARRMLYVK*

LD23642.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-PA 477 CG9204-PA 1..477 1..477 2548 100 Plus
Ate1-PB 484 CG9204-PB 1..484 1..477 2530 98.6 Plus
Ate1-PC 478 CG9204-PC 1..478 1..477 2338 92.9 Plus
Ate1-PD 485 CG9204-PD 1..485 1..477 2320 91.6 Plus

LD23642.pep Sequence

Translation from 78 to 1511

> LD23642.pep
MSLSIVSYYGSQQSKCGYCAGANCSLSHGMHAYQLDCRDYQDLIDRGWRR
CGYYCYKLRNQETCCPCYTIKCNGLEFKLSKSNKRILRRINRFLRDGKRE
SKPEAGDGDGEADADYAIVAPEVTASEPQPQLPDKSPPVINVEQVASLAT
AQRKPTKQATAAAVEAPTLGSNKSAAPISNKPCKKAKQMRLDRRLAKLGD
SASYSTKSLTQEKTLRDFLNTDSETNKHRLKLRLIHVYDDEFRRTLPQSF
ALYKKYQISIHNDPPKDQDAYKEHLQATPLQNEKPWDGPEMGYGSFHQQY
WLDDKLIAVGVIDILPGCVSSVYFFYDPDYSFLSLGTYGSLREIELVQSL
AEKVPSLKYYYMGFYIHSCPKMRYKGKLSPSYLLCPETYEWLPLTDVIRA
KLDEHKYQRLNEDPAARDVNEFLMEHLDEVKLLLGGRTRTDYKHFRQLRG
TVSDDDIIIEYSKLVGKECARRMLYVK*

LD23642.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13155-PA 537 GF13155-PA 1..534 1..476 1810 66 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20876-PA 530 GG20876-PA 1..527 1..476 2076 78.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22745-PA 536 GH22745-PA 1..533 1..476 1566 59.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Ate1-PA 477 CG9204-PA 1..477 1..477 2548 100 Plus
Ate1-PB 484 CG9204-PB 1..484 1..477 2530 98.6 Plus
Ate1-PC 478 CG9204-PC 1..478 1..477 2338 92.9 Plus
Ate1-PD 485 CG9204-PD 1..485 1..477 2320 91.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18527-PA 537 GI18527-PA 1..534 1..476 1553 58.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17575-PA 495 GL17575-PA 1..492 1..476 1705 69.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24830-PB 480 GA24830-PB 1..477 1..476 1863 72.5 Plus
Dpse\GA24830-PA 531 GA24830-PA 1..528 1..476 1806 65.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\Ate1-PA 528 GM19800-PA 1..528 1..477 2261 81.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Ate1-PA 528 GD25293-PA 1..528 1..477 2284 82.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21393-PA 541 GJ21393-PA 1..538 1..476 1622 61 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15677-PA 541 GK15677-PA 1..541 1..477 1593 59.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13816-PA 528 GE13816-PA 1..525 1..476 2189 79.1 Plus